FC878081

Overview
NameFC878081
Unique NameFC878081
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length817
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4085 contig Ccv1_Contig4085:1..817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878081 vs. ExPASy Swiss-Prot
Match: RFS1_ARATH (Probable galactinol--sucrose galactosyltransferase 1 OS=Arabidopsis thaliana GN=RFS1 PE=2 SV=1)

HSP 1 Score: 388.267 bits (996), Expect = 2.805e-107
Identity = 188/249 (75.50%), Postives = 211/249 (84.74%), Query Frame = 1
Query:   70 MTVGAGISVSDGNLMVKGSCVLANVKENIVVTPAAGGALVDGAFIGVTSDQLGSRRVFPVGKLEGLRFMCVFRFKMWWMTQRMGNCGQDVPFETQFLIVEAREGSHFDEGSQYGEEQSALYTVFLPILEGDFRAVLQGNEQNELEICLESGDPDVDEFEGSHLVFVAAGSDPFDVITNAVKTVERHLLTFSHRERKKMPDMLNWFGWCTWDAFYTDVTGEGVKQGLESFQKGGIPSKFIIIDDGWQSLG 816
            MTVGAGISV+D +L+V G  VL  V EN++VTPA+G AL+DGAFIGVTSDQ GS RVF +GKLE LRFMCVFRFK+WWMTQRMG  G+++P ETQFLIVEA +GS        G +QS+ Y VFLPILEGDFRAVLQGNE NELEICLESGDP VD+FEGSHLVFVAAGSDPFDVIT AVK VE+HL TFSHRERKKMPDMLNWFGWCTWDAFYT+VT + VKQGLES + GG+  KF+IIDDGWQS+G
Sbjct:    1 MTVGAGISVTDSDLVVLGHRVLHGVPENVLVTPASGNALIDGAFIGVTSDQTGSHRVFSLGKLEDLRFMCVFRFKLWWMTQRMGTNGKEIPCETQFLIVEANQGSDLG-----GRDQSSSYVVFLPILEGDFRAVLQGNEANELEICLESGDPTVDQFEGSHLVFVAAGSDPFDVITKAVKAVEQHLQTFSHRERKKMPDMLNWFGWCTWDAFYTNVTAKDVKQGLESLKAGGVTPKFVIIDDGWQSVG 244          
BLAST of FC878081 vs. ExPASy Swiss-Prot
Match: RFS2_ARATH (Probable galactinol--sucrose galactosyltransferase 2 OS=Arabidopsis thaliana GN=RFS2 PE=2 SV=2)

HSP 1 Score: 327.02 bits (837), Expect = 7.673e-89
Identity = 146/248 (58.87%), Postives = 191/248 (77.02%), Query Frame = 1
Query:   70 MTVGAGISVSDGNLMVKGSCVLANVKENIVVTPAAGGALVDGAFIGVTSDQLGSRRVFPVGKLEGLRFMCVFRFKMWWMTQRMGNCGQDVPFETQFLIVEAREGSHFDEGSQYGEEQSALYTVFLPILEGDFRAVLQGNEQNELEICLESGDPDVDEFEGSHLVFVAAGSDPFDVITNAVKTVERHLLTFSHRERKKMPDMLNWFGWCTWDAFYTDVTGEGVKQGLESFQKGGIPSKFIIIDDGWQSL 813
            MT+ + ISV + NL+V+G  +L  + +NI++TP  G   V G+FIG T +Q  S  VFP+G LEGLRFMC FRFK+WWMTQRMG+CG+D+P ETQF+++E++     DE    G++   +YTVFLP+LEG FRAVLQGNE+NE+EIC ESGD  V+  +G+HLV+V AG++PF+VI  +VK VERH+ TF HRE+KK+P  L+WFGWCTWDAFYTDVT EGV +GL+S  +GG P KF+IIDDGWQ +
Sbjct:    1 MTITSNISVQNDNLVVQGKTILTKIPDNIILTPVTGNGFVSGSFIGATFEQSKSLHVFPIGVLEGLRFMCCFRFKLWWMTQRMGSCGKDIPLETQFMLLESK-----DEVEGNGDDAPTVYTVFLPLLEGQFRAVLQGNEKNEIEICFESGDKAVETSQGTHLVYVHAGTNPFEVIRQSVKAVERHMQTFHHREKKKLPSFLDWFGWCTWDAFYTDVTAEGVDEGLKSLSEGGTPPKFLIIDDGWQQI 243          
BLAST of FC878081 vs. ExPASy Swiss-Prot
Match: RFS6_ARATH (Probable galactinol--sucrose galactosyltransferase 6 OS=Arabidopsis thaliana GN=RFS6 PE=2 SV=2)

HSP 1 Score: 276.944 bits (707), Expect = 9.106e-74
Identity = 122/249 (49.00%), Postives = 174/249 (69.88%), Query Frame = 1
Query:   70 MTVGAGISVSDGNLMVKGSCVLANVKENIVVTPAAGGALVDGAFIGVTSDQLGSRRVFPVGKLEGLRFMCVFRFKMWWMTQRMGNCGQDVPFETQFLIVEAREGSHFDEGSQYGEE-QSALYTVFLPILEGDFRAVLQGNEQNELEICLESGDPDVDEFEGSHLVFVAAGSDPFDVITNAVKTVERHLLTFSHRERKKMPDMLNWFGWCTWDAFYTDVTGEGVKQGLESFQKGGIPSKFIIIDDGWQSL 813
            MT+   + +SDGNL++K   +L  V +N++ T A+    V+G F+G   ++  S+ + P+G L   RFM  FRFK+WWM QRMG  G+D+P+ETQFL+VE+ +GSH +     G E    +YTVFLP++EG FR+ LQGN  +E+E+CLESGD D      +H +++ AG+DPF  IT+A++TV+ HL +F  R  KK+P ++++FGWCTWDAFY +VT EGV+ GL+S   GG P KF+IIDDGWQS+
Sbjct:    1 MTIKPAVRISDGNLIIKNRTILTGVPDNVITTSASEAGPVEGVFVGAVFNKEESKHIVPIGTLRNSRFMSCFRFKLWWMAQRMGEMGRDIPYETQFLLVESNDGSHLESDGANGVECNQKVYTVFLPLIEGSFRSCLQGNVNDEVELCLESGDVDTKRSSFTHSLYIHAGTDPFQTITDAIRTVKLHLNSFRQRHEKKLPGIVDYFGWCTWDAFYQEVTQEGVEAGLKSLAAGGTPPKFVIIDDGWQSV 249          
BLAST of FC878081 vs. ExPASy Swiss-Prot
Match: RFS5_ARATH (Probable galactinol--sucrose galactosyltransferase 5 OS=Arabidopsis thaliana GN=RFS5 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.261e-47
Identity = 98/250 (39.20%), Postives = 147/250 (58.80%), Query Frame = 1
Query:   94 VSDGNLMVKGSCVLANVKENIVVTPAA-----GGALVD---GAFIGVTSD-QLGSRRVFPVGKLEGLRFMCVFRFKMWWMTQRMGNCGQDVPFETQFLIVEAREGSHFDEGSQYGEEQSALYTVFLPILEGDFRAVLQGNEQNELEICLESGDPDVDEFEGSHLVFVAAGSDPFDVITNAVKTVERHLLTFSHRERKKMPDMLNWFGWCTWDAFYTDVTGEGVKQGLESFQKGGIPSKFIIIDDGWQSLG 816
            + D  L+  G  VL +V  N+ +T +       G  +D   G+FIG   D +  S  V  +GKL+ +RFM +FRFK+WW T  +G+ G+D+  ETQ +I++ + GS    GS  G      Y + LP+LEG FR+  Q  E +++ +C+ESG  +V   E   +V+V AG DPF ++ +A+K +  H+ TF   E K  P +++ FGWCTWDAFY  V  +GV +G++    GG P   ++IDDGWQS+G
Sbjct:   24 LEDSTLLANGQVVLTDVPVNVTLTSSPYLVDKDGVPLDVSAGSFIGFNLDGEPKSHHVASIGKLKNIRFMSIFRFKVWWTTHWVGSNGRDIENETQIIILD-QSGSDSGPGSGSGRP----YVLLLPLLEGSFRSSFQSGEDDDVAVCVESGSTEVTGSEFRQIVYVHAGDDPFKLVKDAMKVIRVHMNTFKLLEEKSPPGIVDKFGWCTWDAFYLTVNPDGVHKGVKCLVDGGCPPGLVLIDDGWQSIG 268          
BLAST of FC878081 vs. ExPASy Swiss-Prot
Match: RFS_ORYSJ (Galactinol--sucrose galactosyltransferase OS=Oryza sativa subsp. japonica GN=RFS PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.852e-42
Identity = 96/244 (39.34%), Postives = 135/244 (55.33%), Query Frame = 1
Query:  106 NLMVKGSCVLANVKENIVVTPAAG-------GALVDGAFIGVTSDQLGSRRVFPVGKLEGLRFMCVFRFKMWWMTQRMGNCGQDVPFETQFLIVEAREGSHFDEGSQYGEEQSALYTVFLPILEGDFRAVLQ-GNEQNELEICLESGDPDVDEFEGSHLVFVAAGSDPFDVITNAVKTVERHLLTFSHRERKKMPDMLNWFGWCTWDAFYTDVTGEGVKQGLESFQKGGIPSKFIIIDDGWQSL 813
            +L V G   L +V  NI +TPA+         A   G+F+G  +     R V P+GKL   RFM +FRFK+WW T  +G  G+DV  ETQ +I++         G++        Y + LPI+EG FRA L+ G  ++ + + LESG   V        V++ AG DPFD++ +A++ V  HL TF   E K  P +++ FGWCTWDAFY  V  EGV +G+     GG P   ++IDDGWQS+
Sbjct:   34 DLAVDGHPFLLDVPANIRLTPASTLVPNSDVPAAAAGSFLGFDAPAAKDRHVVPIGKLRDTRFMSIFRFKVWWTTHWVGTNGRDVENETQMMILD-------QSGTKSSPTGPRPYVLLLPIVEGPFRACLESGKAEDYVHMVLESGSSTVRGSVFRSAVYLHAGDDPFDLVKDAMRVVRAHLGTFRLMEEKTPPPIVDKFGWCTWDAFYLKVHPEGVWEGVRRLADGGCPPGLVLIDDGWQSI 270          
BLAST of FC878081 vs. ExPASy Swiss-Prot
Match: RFS_PEA (Galactinol--sucrose galactosyltransferase OS=Pisum sativum GN=RFS PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.996e-37
Identity = 78/207 (37.68%), Postives = 116/207 (56.04%), Query Frame = 1
Query:  193 GAFIGVTSDQLGSRRVFPVGKLEGLRFMCVFRFKMWWMTQRMGNCGQDVPFETQFLIVEAREGSHFDEGSQYGEEQSALYTVFLPILEGDFRAVLQGNEQNELEICLESGDPDVDEFEGSHLVFVAAGSDPFDVITNAVKTVERHLLTFSHRERKKMPDMLNWFGWCTWDAFYTDVTGEGVKQGLESFQKGGIPSKFIIIDDGWQSL 813
            G F+G  + +  S  V P+GKL+G++F  +FRFK+WW T  +G  G ++  ETQ LI+        D+    G      Y + LPILE  FR  LQ    + +++ +ESG   V        +++   +DP+ ++  AVK ++  L TF   E K  P ++  FGWCTWDAFY  V  +GV +G+++   GG P  F+IIDDGWQS+
Sbjct:   84 GCFVGFNTTEAKSHHVVPLGKLKGIKFTSIFRFKVWWTTHWVGTNGHELQHETQILIL--------DKNISLGRP----YVLLLPILENSFRTSLQPGLNDYVDMSVESGSTHVTGSTFKACLYLHLSNDPYRLVKEAVKVIQTKLGTFKTLEEKTPPSIIEKFGWCTWDAFYLKVHPKGVWEGVKALTDGGCPPGFVIIDDGWQSI 278          
BLAST of FC878081 vs. ExPASy Swiss-Prot
Match: STSYN_PEA (Stachyose synthase OS=Pisum sativum GN=STS1 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.983e-36
Identity = 74/207 (35.75%), Postives = 113/207 (54.59%), Query Frame = 1
Query:  193 GAFIGVTSDQLGSRRVFPVGKLEGLRFMCVFRFKMWWMTQRMGNCGQDVPFETQFLIVEAREGSHFDEGSQYGEEQSALYTVFLPILEGDFRAVLQGNEQNELEICLESGDPDVDEFEGSHLVFVAAGSDPFDVITNAVKTVERHLLTFSHRERKKMPDMLNWFGWCTWDAFYTDVTGEGVKQGLESFQKGGIPSKFIIIDDGWQSL 813
            G F G + +    R +  +G   G  F+ +FRFK WW TQ +G  G D+  ETQ++++E  E              +  Y V +PI+E  FR+ L     + ++I  ESG   V E   + + +V    +P+D++  A   +  HL +F   E K +P++++ FGWCTWDAFY  V   G+  GL+ F KGG+  +F+IIDDGWQS+
Sbjct:   72 GGFFGFSHETPSDRLMNSIGSFNGKDFLSIFRFKTWWSTQWIGKSGSDLQMETQWILIEVPE--------------TKSYVVIIPIIEKCFRSALFPGFNDHVKIIAESGSTKVKESTFNSIAYVHFSENPYDLMKEAYSAIRVHLNSFRLLEEKTIPNLVDKFGWCTWDAFYLTVNPIGIFHGLDDFSKGGVEPRFVIIDDGWQSI 264          
BLAST of FC878081 vs. ExPASy Swiss-Prot
Match: RFS4_ARATH (Probable galactinol--sucrose galactosyltransferase 4 OS=Arabidopsis thaliana GN=RFS4 PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 5.770e-36
Identity = 82/258 (31.78%), Postives = 131/258 (50.78%), Query Frame = 1
Query:   91 SVSDGNLMVKGSC-VLANVKENIVVTPAAGGALVD----------------GAFIGVTSDQLGSRRVFPVGKLEGLRFMCVFRFKMWWMTQRMGNCGQDVPFETQFLIVEAREGSHFDEGSQYGEEQSALYTVFLPILEGDFRAVLQGNEQNELEICLESGDPDVDEFEGSHLVFVAAGSDPFDVITNAVKTVERHLLTFSHRERKKMPDMLNWFGWCTWDAFYTDVTGEGVKQGLESFQKGGIPSKFIIIDDGWQSL 813
            ++S+G+L  K S  +L +V +N+  TP +  ++                  G F+G T +    R    +G+ E   F+ +FRFKMWW T  +G  G D+  ETQ+++++  E                 Y   +P +EG FRA L   E+  + IC ESG   V E     + ++    +P++++  A   +  H+ TF   E KK+P +++ FGWCTWDA Y  V    +  G++ F+ GG+  KF+IIDDGWQS+
Sbjct:   35 NLSEGSLCAKDSTPILFDVPQNVTFTPFSSHSISTDAPLPILLRVQANAHKGGFLGFTKESPSDRLTNSLGRFEDREFLSLFRFKMWWSTAWIGKSGSDLQAETQWVMLKIPEIDS--------------YVAIIPTIEGAFRASLTPGEKGNVLICAESGSTKVKESSFKSIAYIHICDNPYNLMKEAFSALRVHMNTFKLLEEKKLPKIVDKFGWCTWDACYLTVDPATIWTGVKEFEDGGVCPKFVIIDDGWQSI 278          
BLAST of FC878081 vs. ExPASy Swiss-Prot
Match: AGAL_SULSO (Alpha-galactosidase OS=Sulfolobus solfataricus GN=galS PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.424e-11
Identity = 31/95 (32.63%), Postives = 54/95 (56.84%), Query Frame = 1
Query:  529 DVDEFEGSHLVFVAAGSDPFDVITNAVKTVERHLLTFSHRERKKMPD-MLNWFGWCTWDAFYT-DVTGEGVKQGLESFQKGGIPSKFIIIDDGWQ 807
            + DE + S+ + +    +P+  I NA+    +   TF  R+ K  PD ++N  GWC+W+AF T D+  E + + ++   + G+   ++IIDDGWQ
Sbjct:  172 NTDEIKRSYFLSIGTSDNPYKAIENAINIASKETFTFKLRKEKGFPDKVMNGLGWCSWNAFLTKDLNEENLIKVVKGIIERGLRLNWVIIDDGWQ 266          
The following BLAST results are available for this feature:
BLAST of FC878081 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
RFS1_ARATH2.805e-10775.50Probable galactinol--sucrose galactosyltransferase... [more]
RFS2_ARATH7.673e-8958.87Probable galactinol--sucrose galactosyltransferase... [more]
RFS6_ARATH9.106e-7449.00Probable galactinol--sucrose galactosyltransferase... [more]
RFS5_ARATH3.261e-4739.20Probable galactinol--sucrose galactosyltransferase... [more]
RFS_ORYSJ1.852e-4239.34Galactinol--sucrose galactosyltransferase OS=Oryza... [more]
RFS_PEA3.996e-3737.68Galactinol--sucrose galactosyltransferase OS=Pisum... [more]
STSYN_PEA1.983e-3635.75Stachyose synthase OS=Pisum sativum GN=STS1 PE=1 S... [more]
RFS4_ARATH5.770e-3631.78Probable galactinol--sucrose galactosyltransferase... [more]
AGAL_SULSO6.424e-1132.63Alpha-galactosidase OS=Sulfolobus solfataricus GN=... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA30BA01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA30BA01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878081 ID=FC878081; Name=FC878081; organism=Citrus clementina; type=EST; length=817bp
CATAATTGTTGTCACTGTTGTGTTATTACTTGTGTGTTTGTTTCTTTTTG
TTTTAGTTATTTTTTCAAGATGACGGTTGGTGCTGGGATTAGTGTGAGTG
ATGGGAACTTGATGGTGAAGGGGAGCTGCGTGTTGGCGAATGTTAAAGAG
AACATAGTGGTGACGCCGGCGGCCGGCGGCGCATTGGTCGATGGAGCTTT
TATTGGTGTTACTTCCGATCAGCTGGGCAGTCGCCGAGTCTTTCCTGTTG
GCAAACTTGAGGGATTGAGATTCATGTGTGTGTTTCGTTTCAAAATGTGG
TGGATGACACAGAGAATGGGAAATTGTGGCCAAGATGTTCCCTTTGAGAC
TCAATTCTTGATTGTTGAAGCACGGGAAGGATCTCATTTTGATGAGGGTA
GTCAATATGGAGAGGAACAATCTGCATTGTATACCGTGTTCTTGCCAATT
CTTGAAGGAGATTTCAGGGCTGTTCTTCAGGGGAATGAACAAAATGAGCT
GGAGATATGTTTGGAGAGCGGTGATCCTGATGTTGATGAATTTGAAGGGA
GTCATTTGGTTTTTGTGGCAGCTGGATCTGATCCTTTTGATGTAATCACT
AATGCAGTAAAAACTGTTGAGAGACATCTGCTGACTTTTTCCCATCGCGA
GAGAAAGAAGATGCCCGACATGTTGAACTGGTTTGGCTGGTGTACATGGG
ATGCTTTCTACACTGATGTCACAGGAGAGGGTGTGAAGCAAGGATTAGAG
AGCTTCCAGAAAGGCGGAATTCCCTCCAAGTTTATTATAATTGATGATGG
CTGGCAATCATTAGGTA
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