FC878084

Overview
NameFC878084
Unique NameFC878084
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878084_ssr25 microsatellite FC878084_ssr25:25..36. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12052 contig Ccv1_Contig12052:118..855. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878084 vs. ExPASy Swiss-Prot
Match: DFRA_PYRCO (Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase OS=Pyrus communis GN=DFR PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.248e-15
Identity = 57/158 (36.08%), Postives = 82/158 (51.90%), Query Frame = 1
Query:  205 TKTVCVMDASGHFASALVRRLLLRGYTVHAALHNHGKLQCIEGELINYNEEKKLKVFQADPFDYHSLVNALKGCSGLFYSFEPPSDHSTYDELTAEVETM-AAHNVLEACAQTNTVDKVVFTSSLTAVVWSNHRDNPTSHDFDERNWSDVNLCKKFKL 675
            +++VCV  ASG   S LV RLL  GYTV A + +    + ++  L     E  L +++AD  D  S   A++GCSG+F+   P    S   E      T+    ++L+AC +  TV K+VFTSS   V    H+  P    +DE NWSDV  C+  K+
Sbjct:    5 SESVCVTGASGFIGSWLVMRLLEHGYTVRATVRDPTNQKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIQGCSGVFHVATPMDFESRDPENEVIKPTINGLLDILKACQKAKTVRKLVFTSSAGTVNVEEHQ-KPV---YDESNWSDVEFCRSVKM 158          
BLAST of FC878084 vs. ExPASy Swiss-Prot
Match: DFRA_MALDO (Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase OS=Malus domestica GN=DFR PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.248e-15
Identity = 57/158 (36.08%), Postives = 82/158 (51.90%), Query Frame = 1
Query:  205 TKTVCVMDASGHFASALVRRLLLRGYTVHAALHNHGKLQCIEGELINYNEEKKLKVFQADPFDYHSLVNALKGCSGLFYSFEPPSDHSTYDELTAEVETM-AAHNVLEACAQTNTVDKVVFTSSLTAVVWSNHRDNPTSHDFDERNWSDVNLCKKFKL 675
            +++VCV  ASG   S LV RLL  GYTV A + +    + ++  L     E  L +++AD  D  S   A++GCSG+F+   P    S   E      T+    ++L+AC +  TV K+VFTSS   V    H+  P    +DE NWSDV  C+  K+
Sbjct:    5 SESVCVTGASGFIGSWLVMRLLEHGYTVRATVRDPTNQKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIQGCSGVFHVATPMDFESKDPENEVIKPTINGLLDILKACQKAKTVRKLVFTSSAGTVNVEEHQ-KPV---YDESNWSDVEFCRSVKM 158          
BLAST of FC878084 vs. ExPASy Swiss-Prot
Match: DFRA_GERHY (Dihydroflavonol-4-reductase OS=Gerbera hybrida GN=DFR PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.379e-14
Identity = 54/159 (33.96%), Postives = 80/159 (50.31%), Query Frame = 1
Query:  211 TVCVMDASGHFASALVRRLLLRGYTVHAALHNHGKLQCIEGELINYNEEKKLKVFQADPFDYHSLVNALKGCSGLFYSFEPPSDHSTYDELTAEVETM-AAHNVLEACAQTNTVDKVVFTSSLTAVVWSNHRDNPTSHDFDERNWSDVNL--CKKFKLW 678
            TVCV  A+G   S LV RLL RGY VHA + + G L+ ++  L     +  LK+++AD     S   A++GC G+F+   P    S   E      T+    +++ +C +  TV K+VFTSS   V    +      H +DE +WSD++    KK   W
Sbjct:    8 TVCVTGAAGFIGSWLVMRLLERGYVVHATVRDPGDLKKVKHLLELPKAQTNLKLWKADLTQEGSFDEAIQGCHGVFHLATPMDFESKDPENEIIKPTIEGVLSIIRSCVKAKTVKKLVFTSSAGTV----NGQEKQLHVYDESHWSDLDFIYSKKMTAW 162          
BLAST of FC878084 vs. ExPASy Swiss-Prot
Match: DFRA_ARATH (Dihydroflavonol-4-reductase OS=Arabidopsis thaliana GN=DFRA PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.073e-14
Identity = 55/160 (34.38%), Postives = 81/160 (50.62%), Query Frame = 1
Query:  208 KTVCVMDASGHFASALVRRLLLRGYTVHAALHNHGKLQCIEGELINYNEEKKLKVFQADPFDYHSLVNALKGCSGLFYSFEPPSDHSTYDELTAEVETM-AAHNVLEACAQTNTVDKVVFTSSLTAVVWSNHRDNPTSHDFDERNWSDVN--LCKKFKLW 678
            +TVCV  ASG   S LV RLL RGY V A + + G L+ ++  L   N +  L +++AD  +  S  +A+ GC G+F+   P    S   E      T+     +++AC +  TV + VFTSS   V    H+ N     +DE +WSD+   + KK   W
Sbjct:    6 ETVCVTGASGFIGSWLVMRLLERGYFVRATVRDPGNLKKVQHLLDLPNAKTLLTLWKADLSEEGSYDDAINGCDGVFHVATPMDFESKDPENEVIKPTVNGMLGIMKACVKAKTVRRFVFTSSAGTVNVEEHQKNV----YDENDWSDLEFIMSKKMTGW 161          
BLAST of FC878084 vs. ExPASy Swiss-Prot
Match: DFRA_VITVI (Dihydroflavonol-4-reductase OS=Vitis vinifera GN=DFR PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.569e-13
Identity = 55/163 (33.74%), Postives = 81/163 (49.69%), Query Frame = 1
Query:  205 TKTVCVMDASGHFASALVRRLLLRGYTVHAALHNHGKLQCIEGELINYNEEKKLKVFQADPFDYHSLVNALKGCSGLFYSFEPPSDHSTYDE---LTAEVETMAAHNVLEACAQTNTVDKVVFTSSLTAVVWSNHRDNPTSHDFDERNWSDVNLC--KKFKLW 678
            ++TVCV  ASG   S LV RLL R  TV A + +   ++ ++  L     E  L +++AD  D  S   A+KGC+G+F+   P    S   E   +   +E M    ++++CA   TV ++VFTSS   V    H+       +DE  WSD+  C  KK   W
Sbjct:    5 SETVCVTGASGFIGSWLVMRLLERRLTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGML--GIMKSCAAAKTVRRLVFTSSAGTVNIQEHQ----LPVYDESCWSDMEFCRAKKMTAW 161          
BLAST of FC878084 vs. ExPASy Swiss-Prot
Match: DFRA_HORVU (Dihydroflavonol-4-reductase OS=Hordeum vulgare GN=ANT18 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.885e-13
Identity = 49/157 (31.21%), Postives = 83/157 (52.87%), Query Frame = 1
Query:  214 VCVMDASGHFASALVRRLLLRGYTVHAALHNHGKLQCIEGELINYNEEKKLKVFQADPFDYHSLVNALKGCSGLFYSFEP---PSDHSTYDELTAEVETMAAHNVLEACAQTNTVDKVVFTSSLTAVVWSNHRDNPTSHDFDERNWSDVNLCKKFKL 675
            V V  ASG   S LV +LL  GYTV A + +   ++  +  L     +++L +++AD  +  S   A+ GC+G+F+   P    S     + +   VE M   +++ AC +  TV ++VFTSS  +V   N  + P    +D+ NWSD++ C++ K+
Sbjct:    8 VVVTGASGFVGSWLVMKLLQAGYTVRATVRDPANVEKTKPLLELPGAKERLSIWKADLSEDGSFNEAIAGCTGVFHVATPMDFDSQDPENEVIKPTVEGML--SIMRACKEAGTVKRIVFTSSAGSV---NIEERPRP-AYDQDNWSDIDYCRRVKM 158          
BLAST of FC878084 vs. ExPASy Swiss-Prot
Match: DFRA_MAIZE (Dihydroflavonol-4-reductase OS=Zea mays GN=A1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.686e-12
Identity = 49/158 (31.01%), Postives = 82/158 (51.90%), Query Frame = 1
Query:  211 TVCVMDASGHFASALVRRLLLRGYTVHAALHNHGKLQCIEGELINYNEEKKLKVFQADPFDYHSLVNALKGCSGLFYSFEPP---SDHSTYDELTAEVETMAAHNVLEACAQTNTVDKVVFTSSLTAVVWSNHRDNPTSHDFDERNWSDVNLCKKFKL 675
            TV V  ASG   S LV +LL  GYTV A + +   +   +  +      ++L +++AD  +  S  +A++GC+G+F+   P    S     + +   VE M   +++ AC +  TV ++VFTSS    V    R  P    +DE +W+DV+ C++ K+
Sbjct:   12 TVLVTGASGFVGSWLVMKLLQAGYTVRATVRDPANVGKTKPLMDLPGATERLSIWKADLAEEGSFHDAIRGCTGVFHVATPMDFLSKDPENEVIKPTVEGMI--SIMRACKEAGTVRRIVFTSS-AGTVNLEERQRPV---YDEESWTDVDFCRRVKM 163          
BLAST of FC878084 vs. ExPASy Swiss-Prot
Match: DFRA_CALCH (Dihydroflavonol-4-reductase OS=Callistephus chinensis GN=F PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.876e-12
Identity = 52/159 (32.70%), Postives = 78/159 (49.06%), Query Frame = 1
Query:  211 TVCVMDASGHFASALVRRLLLRGYTVHAALHNHGKLQCIEGELINYNEEKKLKVFQADPFDYHSLVNALKGCSGLFYSFEPPSDHSTYDELTAEVETM-AAHNVLEACAQTNTVDKVVFTSSLTAVVWSNHRDNPTSHDFDERNWSDVNL--CKKFKLW 678
            TVCV  A+G   S LV RLL RGY V A + N G ++ ++  L     E  L +++AD     S   A++GC G+F+   P    S   E      T+    +++ +CA+  TV K+V+TSS   V    +        +DE +WSD++    KK   W
Sbjct:    8 TVCVTGAAGFIGSWLVMRLLERGYIVRATVRNPGDMKKVKHLLELPKAETNLTLWKADLTQEGSFDEAIEGCHGVFHVATPMDFESKDPENEIIKPTIEGILSIIRSCAKAKTVKKLVYTSSAGTV----NVQETQLPVYDESHWSDLDFIYSKKMTAW 162          
BLAST of FC878084 vs. ExPASy Swiss-Prot
Match: DFRA_PETHY (Dihydroflavonol-4-reductase OS=Petunia hybrida GN=DFRA PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.368e-12
Identity = 51/162 (31.48%), Postives = 80/162 (49.38%), Query Frame = 1
Query:  202 ATKTVCVMDASGHFASALVRRLLLRGYTVHAALHNHGKLQCIEGELINYNEEKKLKVFQADPFDYHSLVNALKGCSGLFYSFEPPSDHSTYDELTAEVETMAAH-NVLEACAQTNTVDKVVFTSSLTAVVWSNHRDNPTSHDFDERNWSDVNL--CKKFKLW 678
            A  TVCV  A+G   S LV RLL RGY VHA + +    + ++  L     +  L +++AD     S   A++GC G+F+   P    S   E      T+    +++E+CA+ NTV ++VFTSS   +     +       +D+ +WSD++    KK   W
Sbjct:   14 AVPTVCVTGAAGFIGSWLVMRLLERGYNVHATVRDPENKKKVKHLLELPKADTNLTLWKADLTVEGSFDEAIQGCQGVFHVATPMDFESKDPENEVIKPTVRGMLSIIESCAKANTVKRLVFTSSAGTLDVQEQQ----KLFYDQTSWSDLDFIYAKKMTGW 171          
BLAST of FC878084 vs. ExPASy Swiss-Prot
Match: DFRA_ANTMA (Dihydroflavonol-4-reductase OS=Antirrhinum majus GN=DFRA PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.153e-11
Identity = 49/161 (30.43%), Postives = 83/161 (51.55%), Query Frame = 1
Query:  202 ATKTVCVMDASGHFASALVRRLLLRGYTVHAALHNHGKLQCIEGELINYNEEKKLKVFQADPFDYHSLVNALKGCSGLFY---SFEPPSDHSTYDELTAEVETMAAHNVLEACAQTNTVDKVVFTSSLTAVVWSNHRDNPTSHDFDERNWSDVNLCKKFKL 675
            ++ TVCV  A+G   S LV RLL RGYTV A + + G ++ ++  +     +  L +++AD     S   A++GC G+F+   S E  S     + +   ++ M   N++++C Q  TV K +FT+S   V    H+  P    +DE + SD++     K+
Sbjct:   16 SSTTVCVTGAAGFIGSWLVMRLLERGYTVRATVRDPGNMKKVKHLIELPKADTNLTLWKADMTVEGSFDEAIQGCEGVFHLATSMEFDSVDPENEVIKPTIDGML--NIIKSCVQAKTVKKFIFTTSGGTVNVEEHQ-KPV---YDETDSSDMDFINSKKM 170          
The following BLAST results are available for this feature:
BLAST of FC878084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
DFRA_PYRCO1.248e-1536.08Bifunctional dihydroflavonol 4-reductase/flavanone... [more]
DFRA_MALDO1.248e-1536.08Bifunctional dihydroflavonol 4-reductase/flavanone... [more]
DFRA_GERHY1.379e-1433.96Dihydroflavonol-4-reductase OS=Gerbera hybrida GN=... [more]
DFRA_ARATH3.073e-1434.38Dihydroflavonol-4-reductase OS=Arabidopsis thalian... [more]
DFRA_VITVI7.569e-1333.74Dihydroflavonol-4-reductase OS=Vitis vinifera GN=D... [more]
DFRA_HORVU9.885e-1331.21Dihydroflavonol-4-reductase OS=Hordeum vulgare GN=... [more]
DFRA_MAIZE1.686e-1231.01Dihydroflavonol-4-reductase OS=Zea mays GN=A1 PE=3... [more]
DFRA_CALCH2.876e-1232.70Dihydroflavonol-4-reductase OS=Callistephus chinen... [more]
DFRA_PETHY8.368e-1231.48Dihydroflavonol-4-reductase OS=Petunia hybrida GN=... [more]
DFRA_ANTMA4.153e-1130.43Dihydroflavonol-4-reductase OS=Antirrhinum majus G... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA88DH02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA88DH02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878084 ID=FC878084; Name=FC878084; organism=Citrus clementina; type=EST; length=738bp
ACAATAAATACCTGTACAACCCCCCCCTCCCTCCCTCCATCCTGTCTTCC
TCTTCAAACAAAATCTCAACTCTTCCTTCTCCTTCTTGAATTAATTGGAA
ATTACTTAAATCTCCCTCTCCTCCCAAAAATGGCGCCACCAGCATCATCC
GGTATTGAAGAAGAAATTGCAGTTGATCGAGACGGTTATGATTCTTCAAA
CGCAACAAAGACAGTATGCGTAATGGACGCCTCTGGCCACTTTGCCTCCG
CCCTCGTCCGCCGTCTCTTGCTTAGAGGCTACACCGTCCACGCTGCCCTC
CACAACCACGGAAAATTGCAGTGTATCGAAGGAGAGTTAATTAATTACAA
CGAGGAGAAGAAATTGAAAGTTTTCCAGGCAGACCCCTTTGATTACCACA
GCCTCGTGAATGCTTTAAAGGGTTGCTCCGGTCTGTTCTACTCCTTTGAG
CCTCCCTCCGACCACTCCACCTACGATGAATTGACGGCGGAAGTAGAGAC
AATGGCAGCTCACAACGTGCTGGAAGCGTGCGCACAGACAAATACAGTTG
ACAAAGTCGTCTTCACGTCTTCTCTAACCGCCGTCGTCTGGAGTAACCAC
CGCGACAATCCGACGTCGCACGACTTCGATGAGCGAAATTGGAGTGACGT
CAATTTGTGCAAGAAATTCAAGCTATGGCATGGTTTGTCAAAGACGCTGG
CGGAGAAGACAGCGTGNGCCCTAGCGATGGACCGAGGG
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