FC878085

Overview
NameFC878085
Unique NameFC878085
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length906
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3503 contig Ccv1_Contig3503:153..1058. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878085 vs. ExPASy Swiss-Prot
Match: RDR3_ORYSJ (Probable RNA-dependent RNA polymerase 3 OS=Oryza sativa subsp. japonica GN=RDR3 PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.461e-30
Identity = 76/213 (35.68%), Postives = 125/213 (58.69%), Query Frame = 2
Query:  284 SSPQQNRSPVTVTTVRLL--NLPQDYVVKQSPV-ADQQPRGSPMSSISHAMRHRASIPQYVALGELEFRKAFLILSYIGENSLEEVITADEIRGMRDLQMARFESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCT---FKGPYLNQTRTHLQRELGDDYILLVKFDEELGGHRSSNNWNDSYSKYNEIARESILCGLALLQF 904
            S+P++  +P +V  +  L  N+    V   SP+ A  Q   +   +  +A+R  AS PQ +AL EL FRK F++ +Y+    +E V++ D IR ++ L MA+FES++W   G K I+  DR  +L  D G T +YHC+++ +G+     FKGPY+  TRTHLQ+ +GDD +L+VKF  +L    +  +++     Y+++A + I+ GL   +F
Sbjct:  234 STPRRVSTPSSVQDISRLIENMAGPSVSPPSPITAMPQNPTTTCHTTDNALREAAS-PQMLALEELGFRKIFMVFAYLASEKIENVLSVDYIRSLKFLSMAQFESQIWRTFGHKYIAASDRAKNLDSDPGMTKVYHCNVAIRGDTVVKIFKGPYIENTRTHLQKVVGDDNVLVVKFMGKLSD--TKTDFSTYCEHYHKVAEDGIVLGLRRYRF 443          
BLAST of FC878085 vs. ExPASy Swiss-Prot
Match: RDR4_ORYSJ (Probable RNA-dependent RNA polymerase 4 OS=Oryza sativa subsp. japonica GN=RDR4 PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 7.503e-27
Identity = 64/170 (37.65%), Postives = 95/170 (55.88%), Query Frame = 2
Query:  446 PQYVALGELEFRKAFLILSYIGENS--------------LEEVITADEIRGMRDLQMARFESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCT---FKGPYLNQTRTHLQRELGDDYILLVKFDEELGGHRSSNNWNDSYSKYNEIARESILCGLALLQF 904
            PQ +ALGELEFRK F+I +Y+  N               +E+V++ D IR ++ + MA+FES +W   G  NIS  DR  +L    G + +YHC++  +G      FKGPY+   RTHLQ+ LGDD +L+VKF E      +  + +     Y+++A E I+ GL   +F
Sbjct:  277 PQMLALGELEFRKIFMIFAYLSWNKKGVKPPLSTPKSSKIEDVLSVDSIRSLKSMSMAQFESRIWSTFGHDNISSSDRAKNLDSGPGMSKVYHCNVEIRGGTVVKIFKGPYIENRRTHLQKVLGDDNVLVVKFMEI--SSDTETDLSTYLEHYHKVAEEGIVLGLRCYRF 444          
The following BLAST results are available for this feature:
BLAST of FC878085 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RDR3_ORYSJ1.461e-3035.68Probable RNA-dependent RNA polymerase 3 OS=Oryza s... [more]
RDR4_ORYSJ7.503e-2737.65Probable RNA-dependent RNA polymerase 4 OS=Oryza s... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA42CH03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA42CH03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878085 ID=FC878085; Name=FC878085; organism=Citrus clementina; type=EST; length=906bp
CAGCATCATGAGCGACCCGGCGGTGGTCAGTCAACAAGGAGTAGTTTCAC
TGCCGCTTTCCGTAGAACAACTTATAAGCAAAATTTACACGGAGCAGAAC
AAGCTTCCGCCTGACGACGGAGCCAGACGCAGTCTCGCTTCCCTCGGCGA
AGATGCAGCTCTCGACGTCCTTCGCACTATCGCCTCCGACAAAATCAAGT
ACAGTTTCAGCGGCTACATTAACTACTTGGTCAAGAAACGCAACAACAAC
GGCTCGCCGCTTAAGCGAGTGTGTTTTTCTCCTTCTTCTCCTCAGCAAAA
TCGTAGCCCAGTTACCGTCACCACCGTTCGTCTCTTAAATCTTCCTCAAG
ATTATGTTGTGAAGCAGTCTCCGGTAGCCGACCAGCAGCCGAGAGGCTCG
CCAATGAGTTCGATTTCACATGCAATGAGGCATCGAGCATCAATTCCTCA
GTATGTGGCACTGGGAGAACTTGAATTCAGGAAGGCGTTTCTTATTTTGA
GCTACATTGGGGAAAATAGTTTGGAAGAAGTGATTACTGCTGACGAAATT
CGGGGAATGAGAGATTTACAAATGGCTAGATTTGAATCAGAAGTTTGGGA
AAAGCTTGGCCGAAAAAATATCTCGCAAGAAGACCGACGAATGTCTCTCA
AATGGGATTCTGGGAAAACACATATGTACCACTGTCATATTTCCACCAAG
GGGAATTGTACATTCAAGGGCCCCTATCTTAATCAAACAAGAACTCACTT
ACAAAGGGAATTGGGGGATGACTACATTTTGTTGGTCAAGTTTGATGAAG
AGCTGGGGGGCCACAGAAGTTCAAACAATTGGAATGATTCTTATTCTAAG
TACAATGAAATTGCAAGAGAAAGTATCCTTTGTGGGCTTGCGTTGTTACA
ATTTTT
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