FC878085
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC878085 vs. ExPASy Swiss-Prot
Match: RDR3_ORYSJ (Probable RNA-dependent RNA polymerase 3 OS=Oryza sativa subsp. japonica GN=RDR3 PE=2 SV=2) HSP 1 Score: 133.65 bits (335), Expect = 1.461e-30 Identity = 76/213 (35.68%), Postives = 125/213 (58.69%), Query Frame = 2 Query: 284 SSPQQNRSPVTVTTVRLL--NLPQDYVVKQSPV-ADQQPRGSPMSSISHAMRHRASIPQYVALGELEFRKAFLILSYIGENSLEEVITADEIRGMRDLQMARFESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCT---FKGPYLNQTRTHLQRELGDDYILLVKFDEELGGHRSSNNWNDSYSKYNEIARESILCGLALLQF 904 S+P++ +P +V + L N+ V SP+ A Q + + +A+R AS PQ +AL EL FRK F++ +Y+ +E V++ D IR ++ L MA+FES++W G K I+ DR +L D G T +YHC+++ +G+ FKGPY+ TRTHLQ+ +GDD +L+VKF +L + +++ Y+++A + I+ GL +F Sbjct: 234 STPRRVSTPSSVQDISRLIENMAGPSVSPPSPITAMPQNPTTTCHTTDNALREAAS-PQMLALEELGFRKIFMVFAYLASEKIENVLSVDYIRSLKFLSMAQFESQIWRTFGHKYIAASDRAKNLDSDPGMTKVYHCNVAIRGDTVVKIFKGPYIENTRTHLQKVVGDDNVLVVKFMGKLSD--TKTDFSTYCEHYHKVAEDGIVLGLRRYRF 443
BLAST of FC878085 vs. ExPASy Swiss-Prot
Match: RDR4_ORYSJ (Probable RNA-dependent RNA polymerase 4 OS=Oryza sativa subsp. japonica GN=RDR4 PE=2 SV=2) HSP 1 Score: 121.324 bits (303), Expect = 7.503e-27 Identity = 64/170 (37.65%), Postives = 95/170 (55.88%), Query Frame = 2 Query: 446 PQYVALGELEFRKAFLILSYIGENS--------------LEEVITADEIRGMRDLQMARFESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCT---FKGPYLNQTRTHLQRELGDDYILLVKFDEELGGHRSSNNWNDSYSKYNEIARESILCGLALLQF 904 PQ +ALGELEFRK F+I +Y+ N +E+V++ D IR ++ + MA+FES +W G NIS DR +L G + +YHC++ +G FKGPY+ RTHLQ+ LGDD +L+VKF E + + + Y+++A E I+ GL +F Sbjct: 277 PQMLALGELEFRKIFMIFAYLSWNKKGVKPPLSTPKSSKIEDVLSVDSIRSLKSMSMAQFESRIWSTFGHDNISSSDRAKNLDSGPGMSKVYHCNVEIRGGTVVKIFKGPYIENRRTHLQKVLGDDNVLVVKFMEI--SSDTETDLSTYLEHYHKVAEEGIVLGLRCYRF 444 The following BLAST results are available for this feature:
BLAST of FC878085 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 2
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878085 ID=FC878085; Name=FC878085; organism=Citrus clementina; type=EST; length=906bpback to top |