FC878086

Overview
NameFC878086
Unique NameFC878086
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length826
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11745 contig Ccv1_Contig11745:43..868. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGL1_ARATH (Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic OS=Arabidopsis thaliana GN=ADG2 PE=1 SV=3)

HSP 1 Score: 369.007 bits (946), Expect = 1.783e-101
Identity = 193/265 (72.83%), Postives = 221/265 (83.40%), Query Frame = 3
Query:   42 MALSADGRFSLSATGQXXXXXXXXXXSRNWRLVKSCNGELMGTKLN----PNAKHRNEAGSKLVQKQVCMTLTADIAGESKLRDLEMEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKI 824
            M +SAD R SLSA             +R+ +L   CNGELMG KLN    PN + R+   +   QK++ M+L + +AGESK+++LE EKRD RTVA++ILGGGAGTRL+PLTK+RAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYN  +G+ FGDG VEVLAATQTPGE+GKRWFQGTADAVRQFHWLFED R+K IEDVLILSGDHLYRMDYMDF+Q+HRQSGADI+ISC+P+DDRRASDFGLMKI
Sbjct:    1 MVVSADCRISLSAPS--CIRSSSTGLTRHIKLGSFCNGELMGKKLNLSQLPNIRLRSS--TNFSQKRILMSLNS-VAGESKVQELETEKRDPRTVASIILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYN-SNGLGFGDGYVEVLAATQTPGESGKRWFQGTADAVRQFHWLFEDARSKDIEDVLILSGDHLYRMDYMDFIQDHRQSGADISISCIPIDDRRASDFGLMKI 259          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGL3_SOLTU (Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic/amyloplastic OS=Solanum tuberosum GN=AGPS3 PE=2 SV=1)

HSP 1 Score: 345.51 bits (885), Expect = 2.111e-94
Identity = 169/206 (82.04%), Postives = 189/206 (91.75%), Query Frame = 3
Query:  210 SKLVQKQVCMTLTADIAGESKLRDLEMEKR-DARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKI 824
            S +V+  +CM+LT DIAGE+KL+DLE +K+ DARTV A+ILGGGAGTRL+PLTK+RAKPAVP+GGAYRLIDVPMSNCINSGINKVYILTQ+NSASLNRH+ARAYN+G+GVTF  G VEVLAATQTPGE GKRWFQGTA AVRQFHWLFED R+K IEDVLILSGDHLYRMDY+ FVQ+HRQSGADITIS LP+DD RASDFGLMKI
Sbjct:   14 SNVVKPNICMSLTTDIAGEAKLKDLERQKKGDARTVVAIILGGGAGTRLFPLTKRRAKPAVPMGGAYRLIDVPMSNCINSGINKVYILTQFNSASLNRHIARAYNFGNGVTFESGYVEVLAATQTPGELGKRWFQGTAHAVRQFHWLFEDARSKDIEDVLILSGDHLYRMDYLHFVQSHRQSGADITISSLPIDDSRASDFGLMKI 219          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGL2_ARATH (Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic OS=Arabidopsis thaliana GN=APL2 PE=2 SV=2)

HSP 1 Score: 291.967 bits (746), Expect = 2.770e-78
Identity = 142/212 (66.98%), Postives = 169/212 (79.72%), Query Frame = 3
Query:  189 KHRNEAGSKLVQKQVCMTLTADIAGESKLRDLEMEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKI 824
            K R+    K+    +   LT  +  ES    L  +  D + VA++ILGGGAGTRL+PLT +RAKPAVPIGG YRLID+PMSNCINSGI K++ILTQ+NS SLNRHL+R YN+G+GV FGDG VEVLAATQT G+AGK+WFQGTADAVRQF W+FED + K +E VLILSGDHLYRMDYM+FVQ H +S ADIT+SCLPMD+ RASDFGL+KI
Sbjct:   44 KLRSAPQKKIQTNLIRSVLTPFVDQESHEPLLRTQNADPKNVASIILGGGAGTRLFPLTSKRAKPAVPIGGCYRLIDIPMSNCINSGIRKIFILTQFNSFSLNRHLSRTYNFGNGVNFGDGFVEVLAATQTSGDAGKKWFQGTADAVRQFIWVFEDAKTKNVEHVLILSGDHLYRMDYMNFVQKHIESNADITVSCLPMDESRASDFGLLKI 255          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGL1_BETVU (Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic OS=Beta vulgaris GN=AGPS1 PE=2 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 4.000e-77
Identity = 134/180 (74.44%), Postives = 154/180 (85.56%), Query Frame = 3
Query:  285 EMEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKI 824
            E  K D + VAA++LGGGAGTRL+PLT +RAKPAVPIGG YRLIDVPMSNCINSGI K++ILTQ+NS SLNRHLAR YN+G GV FGDG VEV AATQTPGE+GK+WFQGTADAVRQF W FED ++K +E ++ILSGDHLYRMDYM F Q H  + ADIT+SC+PMDD RASD+GLMKI
Sbjct:   80 ESPKADPKNVAAIVLGGGAGTRLFPLTSRRAKPAVPIGGCYRLIDVPMSNCINSGIRKIFILTQFNSFSLNRHLARTYNFGDGVNFGDGFVEVFAATQTPGESGKKWFQGTADAVRQFFWAFEDSKSKDVEHIVILSGDHLYRMDYMSFWQKHIDTNADITVSCIPMDDSRASDYGLMKI 259          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGL1_SOLTU (Glucose-1-phosphate adenylyltransferase large subunit 1 (Fragment) OS=Solanum tuberosum GN=AGPS1 PE=2 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 5.978e-73
Identity = 128/181 (70.72%), Postives = 155/181 (85.64%), Query Frame = 3
Query:  282 LEMEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKI 824
            LE  + + + VAAVILGGG GT+L+PLT + A PAVP+GG YRLID+PMSNCINS INK+++LTQYNSA LNRH+AR Y +G+GV+FGDG VEVLAATQTPGEAGK+WFQGTADAVR+F W+FED +NK IE++++LSGDHLYRMDYM+ VQNH    ADIT+SC P +D RASDFGL+KI
Sbjct:   28 LERRRANPKDVAAVILGGGEGTKLFPLTSRTATPAVPVGGCYRLIDIPMSNCINSAINKIFVLTQYNSAPLNRHIARTY-FGNGVSFGDGFVEVLAATQTPGEAGKKWFQGTADAVRKFIWVFEDAKNKNIENIVVLSGDHLYRMDYMELVQNHIDRNADITLSCAPAEDSRASDFGLVKI 207          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGL3_ARATH (Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic OS=Arabidopsis thaliana GN=APL3 PE=2 SV=2)

HSP 1 Score: 270.396 bits (690), Expect = 8.632e-72
Identity = 133/229 (58.08%), Postives = 174/229 (75.98%), Query Frame = 3
Query:  156 ELMGTKLNP------NAKHRNEAGSKLVQKQVCMTLTADIAGESKLRDLEMEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKI 824
            ++ G+ L P      + K RN      V   +  +  A  A +++    E  + D + VAA+ILGGG G +L+PLTK+ A PAVP+GG YR+ID+PMSNCINS INK+++LTQ+NSASLNRHLAR Y +G+G+ FGDG VEVLAATQTPGEAGK+WFQGTADAVR+F W+FED +N+ IE+++ILSGDHLYRM+YMDFVQ+H  S ADIT+SC P+D+ RAS++GL+ I
Sbjct:   31 KIKGSVLKPFSSDLSSKKFRNRKLRPGVAYAIATSKNAKEALKNQPSMFERRRADPKNVAAIILGGGDGAKLFPLTKRAATPAVPVGGCYRMIDIPMSNCINSCINKIFVLTQFNSASLNRHLARTY-FGNGINFGDGFVEVLAATQTPGEAGKKWFQGTADAVRKFLWVFEDAKNRNIENIIILSGDHLYRMNYMDFVQHHVDSKADITLSCAPVDESRASEYGLVNI 258          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGL4_ARATH (Probable glucose-1-phosphate adenylyltransferase large subunit, chloroplastic OS=Arabidopsis thaliana GN=At2g21590 PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 7.307e-71
Identity = 126/180 (70.00%), Postives = 154/180 (85.56%), Query Frame = 3
Query:  285 EMEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKI 824
            E  K D + VAA+ILGGG G +L+PLT + A PAVP+GG YRLID+PMSNCINS INK+++LTQ+NSASLNRHLAR Y +G+G+ FG G VEVLAATQTPGEAGK+WFQGTADAVR+F W+FED +N+ IE++LILSGDHLYRM+YMDFVQ+H  S ADIT+SC P+ + RAS+FGL+KI
Sbjct:   82 ERRKVDPQNVAAIILGGGNGAKLFPLTMRAATPAVPVGGCYRLIDIPMSNCINSCINKIFVLTQFNSASLNRHLARTY-FGNGINFGGGFVEVLAATQTPGEAGKKWFQGTADAVRKFLWVFEDAKNRNIENILILSGDHLYRMNYMDFVQSHVDSNADITLSCAPVSESRASNFGLVKI 260          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGL2_SOLTU (Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=AGPS2 PE=2 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 2.777e-70
Identity = 129/180 (71.67%), Postives = 150/180 (83.33%), Query Frame = 3
Query:  285 EMEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKI 824
            E    D + VA+VILGGG GTRL+PLT +RAKPAVPIGG YRLIDVPMSNCINSGI K++ILTQ+NS SLNRHLA  YN+G+GV FGDG VEVLA TQTPG+  K WFQ  ADAVR+F W+FE+ +NK +E ++ILSGDHLYRM+YMDFVQ H  + ADIT+SC+PMDD RASDFGLMKI
Sbjct:   79 EQPTADPKAVASVILGGGVGTRLFPLTSRRAKPAVPIGGCYRLIDVPMSNCINSGIRKIFILTQFNSFSLNRHLA-TYNFGNGVGFGDGFVEVLAGTQTPGDGRKMWFQ-AADAVREFIWVFENQKNKNVEHIIILSGDHLYRMNYMDFVQKHIDTNADITVSCVPMDDGRASDFGLMKI 256          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGL2_MAIZE (Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic/amyloplastic OS=Zea mays GN=AGP2 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 4.747e-62
Identity = 122/197 (61.93%), Postives = 148/197 (75.13%), Query Frame = 3
Query:  243 LTADIAGESKLRDLEMEKR---DARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFED-PRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMK 821
            LT+D   ++ +R     +R   D   VAAVILGGG GT+L+PLT  RA PAVPIGG YRLID+PMSNC NSGINK++++TQ+NSASLNRH+ R Y  G G+ F DG VEVLAATQ PGEA   WFQGTADAVR+F W+ ED  ++K IE +LILSGD LYRMDYM+ VQ H    ADIT+SC P+ + RASD+GL+K
Sbjct:   61 LTSDAGPDTLVRPNHPFRRNYADPNEVAAVILGGGTGTQLFPLTSTRATPAVPIGGCYRLIDIPMSNCFNSGINKIFVMTQFNSASLNRHIHRTY-LGGGINFTDGSVEVLAATQMPGEAA-GWFQGTADAVRKFIWVLEDYYKHKAIEHILILSGDQLYRMDYMELVQKHVDDNADITLSCAPVGESRASDYGLVK 255          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGL2_WHEAT (Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic OS=Triticum aestivum GN=AGP-L PE=2 SV=2)

HSP 1 Score: 234.572 bits (597), Expect = 5.249e-61
Identity = 116/175 (66.29%), Postives = 138/175 (78.86%), Query Frame = 3
Query:  300 DARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFED-PRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMK 821
            D   VAAVILGGG GT+L+PLT  RA PAVPIGG YRLID+PMSNC NSGINK++++TQ+NSASLNRH+ R Y  G G+ F DG VEVLAATQ PGEA   WF+GTADAVR+F W+ ED  +NK IE +LILSGD LYRMDYM+ VQ H    ADIT+SC P+ + RAS++GL+K
Sbjct:   86 DPNEVAAVILGGGTGTQLFPLTSTRATPAVPIGGCYRLIDIPMSNCFNSGINKIFVMTQFNSASLNRHIHRTY-LGGGINFTDGSVEVLAATQMPGEAA-GWFRGTADAVRKFIWVLEDYYKNKSIEHILILSGDQLYRMDYMELVQKHVDDNADITLSCAPVGESRASEYGLVK 258          
The following BLAST results are available for this feature:
BLAST of FC878086 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
GLGL1_ARATH1.783e-10172.83Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL3_SOLTU2.111e-9482.04Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL2_ARATH2.770e-7866.98Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL1_BETVU4.000e-7774.44Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL1_SOLTU5.978e-7370.72Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL3_ARATH8.632e-7258.08Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL4_ARATH7.307e-7170.00Probable glucose-1-phosphate adenylyltransferase l... [more]
GLGL2_SOLTU2.777e-7071.67Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL2_MAIZE4.747e-6261.93Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL2_WHEAT5.249e-6166.29Glucose-1-phosphate adenylyltransferase large subu... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA80CB12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA80CB12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878086 ID=FC878086; Name=FC878086; organism=Citrus clementina; type=EST; length=826bp
ATAATTTTGAATTACAATTTTCTCCTTGAGAGTTCAAGAAAATGGCACTC
TCGGCCGATGGCCGGTTTTCCCTCTCAGCAACCGGCCAGCTACGTGGCGC
GAGGGGATTGGCAGCAGGGAGCAGGAACTGGAGGCTTGTCAAGTCTTGCA
ATGGAGAGTTGATGGGCACAAAGCTTAATCCGAATGCAAAACATCGAAAT
GAGGCTGGCAGCAAACTTGTTCAGAAACAAGTTTGCATGACTCTTACGGC
TGACATAGCAGGCGAGTCCAAGTTAAGAGATTTGGAGATGGAGAAGCGTG
ATGCACGCACAGTTGCAGCGGTCATTCTGGGAGGAGGAGCTGGGACCCGT
CTCTACCCTCTCACTAAACAACGTGCCAAGCCTGCTGTTCCAATTGGAGG
TGCATACAGGCTGATTGATGTGCCAATGAGCAATTGCATCAACAGTGGAA
TTAACAAAGTCTACATTCTCACTCAATACAACTCAGCATCACTCAACAGG
CATCTTGCTCGTGCTTACAACTACGGCAGCGGGGTAACCTTTGGAGATGG
ATGTGTTGAGGTTCTAGCTGCCACTCAAACTCCTGGAGAAGCAGGTAAAA
GATGGTTCCAGGGTACTGCGGATGCTGTGAGACAATTTCATTGGCTTTTT
GAGGATCCGAGAAATAAAGTAATTGAAGATGTCCTGATTCTATCTGGGGA
TCACTTGTATAGAATGGACTATATGGACTTTGTCCAGAATCATCGGCAGA
GTGGTGCAGACATCACTATCTCTTGTCTGCCTATGGATGACCGTCGTGCC
TCAGATTTTGGTCTGATGAAAATTAA
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