FC878089

Overview
NameFC878089
Unique NameFC878089
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10718 contig Ccv1_Contig10718:90..795. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878089 vs. ExPASy Swiss-Prot
Match: GAT26_ARATH (GATA transcription factor 26 OS=Arabidopsis thaliana GN=TIFY1 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 3.040e-24
Identity = 60/105 (57.14%), Postives = 72/105 (68.57%), Query Frame = 2
Query:  398 SSQLTLSFRGQVYVFDSVTPDKVQAVXXXXXXXXXXXX-PQGMEVIPHSQR-GIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQF 706
            ++QLT+SFRGQVYVFD+V  DKV AV             PQ ME+        + +Y ++C+ PQRA SLDRFR+KR  RCF+KKVRY VRQEVALRM RNKGQF
Sbjct:   81 ANQLTISFRGQVYVFDAVGADKVDAVLSLLGGSTELAPGPQVMELAQQQNHMPVVEYQSRCSLPQRAQSLDRFRKKRNARCFEKKVRYGVRQEVALRMARNKGQF 185          
BLAST of FC878089 vs. ExPASy Swiss-Prot
Match: GAT25_ARATH (GATA transcription factor 25 OS=Arabidopsis thaliana GN=TIFY2A PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.668e-22
Identity = 72/168 (42.86%), Postives = 91/168 (54.17%), Query Frame = 2
Query:  293 HLSYDPHSA--LENGIVVVEDVAHDSGYAAGANE------------------------LSNSSQLTLSFRGQVYVFDSVTPDKVQAVXXXXXXXXXXXX-PQGMEVIPHSQRGIADYPA---KCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQF 706
            H+ ++ H+   + NG  +V+D A D G A G +E                             QLTLSF+GQVYVFDSV P+KVQAV             P G+   PH    ++  P    + + PQR ASL RFR+KRK R FDKK+RY+VR+EVALRMQRNKGQF
Sbjct:   21 HVQFEHHALHHIHNGSGMVDDQA-DDGNAGGMSEGVETDIPSHPGNVTDNRGEVVDRGSEQGDQLTLSFQGQVYVFDSVLPEKVQAVLLLLGGRELPQAAPPGLGS-PHQNNRVSSLPGTPQRFSIPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQRNKGQF 186          
BLAST of FC878089 vs. ExPASy Swiss-Prot
Match: GAT27_ARATH (GATA transcription factor 27 OS=Arabidopsis thaliana GN=TIFY2B PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.409e-21
Identity = 57/109 (52.29%), Postives = 69/109 (63.30%), Query Frame = 2
Query:  389 LSNSSQLTLSFRGQVYVFDSVTPDKVQAVXXXXXXXXXXXXPQGMEVIPHSQR---GIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQF 706
            + N  QLTLSF+GQVYVFD V+P+KVQAV                   PH      G++  P + + PQR ASL RFR+KRK R FDK +RY+VR+EVALRMQR KGQF
Sbjct:   74 IENGDQLTLSFQGQVYVFDRVSPEKVQAVLLLLGGREVPHTLPTTLGSPHQNNRVLGLSGTPQRLSVPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKKGQF 182          
The following BLAST results are available for this feature:
BLAST of FC878089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
GAT26_ARATH3.040e-2457.14GATA transcription factor 26 OS=Arabidopsis thalia... [more]
GAT25_ARATH1.668e-2242.86GATA transcription factor 25 OS=Arabidopsis thalia... [more]
GAT27_ARATH2.409e-2152.29GATA transcription factor 27 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA30BA02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA30BA02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878089 ID=FC878089; Name=FC878089; organism=Citrus clementina; type=EST; length=707bp
AAAAGACGCTGTCCTTTCTGCCACACATAGACAGAGCTTTATTCTTCTTC
CTTCTTACAATTATTCAATTTTTTTTTTTTTTAACTCTTTAACTTCTCTT
AACACTTGGGGTTAGGGTTTCACTCAAAATCTCCAAAAAGTTTTCCCTTT
CGGTAATGCTTCCAAATCCCCTTCATTCCCCCCAATATCACCTATGTACG
GTCAGTCGCAGTCAATGAACATCTCCTCCCAAATGTCCGGTGGTGGTGCC
GCCGCTGATGAAGACGACGTCTCTGTTGCCGCCGATGATCACCATCTCAG
CTACGACCCTCACTCGGCCCTCGAAAACGGCATTGTCGTCGTCGAAGACG
TTGCTCATGATTCCGGCTATGCTGCCGGGGCCAACGAATTGTCTAATTCC
AGCCAGCTCACTCTCTCCTTTCGCGGCCAGGTCTATGTCTTTGATTCCGT
CACGCCTGATAAGGTTCAAGCAGTGCTGTTATTGTTGGGGGGATGCGAGT
TATCTTCCAGTCCACAGGGCATGGAAGTAATTCCTCACAGCCAGAGGGGT
ATTGCGGACTATCCTGCTAAATGTACCCAACCACAAAGAGCAGCTTCATT
AGATAGGTTTCGGCAGAAGAGGAAAGAGCGTTGCTTTGATAAGAAAGTTA
GATACAGTGTCCGGCAAGAGGTTGCTCTCAGGATGCAGCGGAACAAAGGC
CAATTTA
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