FC878100

Overview
NameFC878100
Unique NameFC878100
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length943
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4897 contig Ccv1_Contig4897:1..943. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878100 vs. ExPASy Swiss-Prot
Match: MAF1_SOLLC (MFP1 attachment factor 1 OS=Solanum lycopersicum GN=MAF1 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.156e-24
Identity = 58/94 (61.70%), Postives = 67/94 (71.28%), Query Frame = 3
Query:  348 TFRIWPPAQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTARFIENXXXXXXXXXXXXXXXGIEVLQVYSKEISKRMLEAVKSRSTAAAS 629
            +F IWPP QRTRDAVI RLIE+L+TPS+LSKRYG +P DEA  TAR IE                GIE+LQVYSKEISKRM++ VKSRS  AA+
Sbjct:   25 SFSIWPPTQRTRDAVINRLIESLSTPSILSKRYGTLPQDEASETARLIEEEAFAAAGSTASDADDGIEILQVYSKEISKRMIDTVKSRSAPAAA 118          
BLAST of FC878100 vs. ExPASy Swiss-Prot
Match: WPP2_ARATH (WPP domain-containing protein 2 OS=Arabidopsis thaliana GN=WPP2 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 9.057e-23
Identity = 61/149 (40.94%), Postives = 88/149 (59.06%), Query Frame = 3
Query:  225 PQQESKK-LDARNDIPHQESKKLDARNDIPQQESKKLNFSNLTFRIWPPAQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTARFIENXXXXXXXXXXXXXXXGIEVLQVYSKEISKRMLEAVKSRSTAAASGISSGVDDTTSPA 668
            P+ ES   + A  D   QE+   D   D+ ++   +     ++ RIWPP Q+TRDAV+ RLIETL+T S+LSKRYG + +D+A   A+ IE                GI++L++YSKEISKRMLE+VK+RS A+    +  V+D  + A
Sbjct:   17 PESESSTTISAMTDPTSQEAASKDT--DLTKEAESEKKPGGISLRIWPPTQKTRDAVLNRLIETLSTESILSKRYGTLKSDDATTVAKLIEEEAYGVASNAVSSDDDGIKILELYSKEISKRMLESVKARSNASVG--NGSVEDANTDA 161          
BLAST of FC878100 vs. ExPASy Swiss-Prot
Match: WPP1_ARATH (WPP domain-containing protein 1 OS=Arabidopsis thaliana GN=WPP1 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.231e-21
Identity = 58/122 (47.54%), Postives = 79/122 (64.75%), Query Frame = 3
Query:  306 IPQQESKKL-NFSNLTFRIWPPAQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTARFIENXXXXXXXXXXXXXXXGIEVLQVYSKEISKRMLEAVKSRSTAAA------SGISSGVD 650
            +P  E++K  N   ++ RIWPP Q+TRDAVI RLIETL+T S+LSKR+G++ ++EA   A+ IE+               GIE+L+ YSKEISKRMLE+VK++S  A+       GI S VD
Sbjct:   26 LPTTETEKNPNPVTISLRIWPPTQKTRDAVINRLIETLSTESILSKRFGSLESEEASSVAKSIEDEAYAIASATVFGDDDGIEILKAYSKEISKRMLESVKAKSNVASPPPKDGDGIESAVD 147          
BLAST of FC878100 vs. ExPASy Swiss-Prot
Match: WPP3_ARATH (WPP domain-containing protein 3 OS=Arabidopsis thaliana GN=WPP3 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.570e-11
Identity = 42/129 (32.56%), Postives = 70/129 (54.26%), Query Frame = 3
Query:  243 KLDARNDIPHQESKKLDARNDIPQQESKKLNFSNLTFRIWPPAQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTARFIENXXXXXXXXXXXXXXXGIEVLQVYSKEISKRMLEAVKSRSTAAAS 629
            +L++R+D   + S     R+D   + +K+     + F +WPP Q++RD V+  +I+TL+T S+LS +YG +  +EA   A+ IE                GI+ L+VY  E S+RM+E+ + R  A  S
Sbjct:   18 QLESRSD---ETSCLQKHRSDATSEVTKEEKSGGILFSVWPPCQKSRDYVVNSMIKTLSTDSILSYKYGTIKPEEASAVAKSIEE--KAYDIASRFVSSDGIKNLEVYGIETSERMIESAEVRFKANGS 141          
The following BLAST results are available for this feature:
BLAST of FC878100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
MAF1_SOLLC2.156e-2461.70MFP1 attachment factor 1 OS=Solanum lycopersicum G... [more]
WPP2_ARATH9.057e-2340.94WPP domain-containing protein 2 OS=Arabidopsis tha... [more]
WPP1_ARATH2.231e-2147.54WPP domain-containing protein 1 OS=Arabidopsis tha... [more]
WPP3_ARATH3.570e-1132.56WPP domain-containing protein 3 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA42CH05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA42CH05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878100 ID=FC878100; Name=FC878100; organism=Citrus clementina; type=EST; length=943bp
TCGACCTCGATATCCCCTTTTTATTCGATGAAAAAAAAAATTAATAATAT
TAAAAAATTGAAAAATTGAAACTTCAAAATACAAATAGATAGAAATAGCA
AATGTCCTCCGACTCTGAGATCGCCGCTGCCTCAGCCACAGCCACAGCCA
CACACCCAAACCGAATAGAGCAACAACAGTCAATGGAAACCGAAACGCAG
CTTGAAGCTTCTCAAAACGACATTCCCCAGCAGGAATCAAAGAAACTCGA
CGCCAGAAACGACATTCCCCATCAGGAATCAAAGAAACTCGACGCCAGAA
ACGACATTCCCCAGCAGGAGTCAAAGAAACTCAACTTCAGCAACCTGACC
TTCCGCATATGGCCACCCGCACAGCGCACGCGCGACGCGGTGATCGCTCG
CCTTATCGAGACTCTCACCACTCCTTCCGTTCTCTCCAAACGCTACGGCG
CCATGCCGACGGACGAGGCCGATTTCACTGCCCGCTTCATTGAGAACGAG
GCCTTTTCCGCCGCCGATGCCGCCGCCTCTGCAGAGGACGATGGTATCGA
GGTCCTTCAGGTCTATTCCAAGGAGATCAGCAAGCGCATGCTCGAAGCCG
TGAAGTCACGCTCTACTGCTGCTGCTTCTGGCATCTCTAGTGGTGTAGAC
GATACAACCAGTCCTGCTCAACCTGCCGGAGGTCCCAACGAGGAATCTGT
TTCGTCTTCTGTTGAGACCGAGGGTTGATTTTCGCACTCTAGCCTTCTCT
ATTTTTTAGCGTTATTTTCTTTTAAAAAATATATATGTTATGTTAGGGTT
TCTGTTACCTTTTGTGGTTCGGAGGTTGAGATCTGTGTTTTTTTGTACTA
AAAACGATGGATTTATGACCTTATATTATAATTTATACCCTAATATGAAT
ATCTAGGGTCTGAATTTTTCCTCAAAAAAAAAAAAAAAAAAAA
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