FC878107
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC878107 vs. ExPASy Swiss-Prot
Match: GAT26_ARATH (GATA transcription factor 26 OS=Arabidopsis thaliana GN=TIFY1 PE=2 SV=2) HSP 1 Score: 192.2 bits (487), Expect = 3.349e-48 Identity = 100/165 (60.61%), Postives = 118/165 (71.52%), Query Frame = 1 Query: 397 SSQLTLSFRGQVYVFDSVTPDKVQAVXXXXXXXXXXXX-PQGMEVIPHSQR-GIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKSEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPKSLCNACGLF 885 ++QLT+SFRGQVYVFD+V DKV AV PQ ME+ + +Y ++C+ PQRA SLDRFR+KR RCF+KKVRY VRQEVALRM RNKGQFTS+K ++ GA QD QDD+ E SCTHCGISSK TPMMRRGPSGP++LCNACGLF Sbjct: 81 ANQLTISFRGQVYVFDAVGADKVDAVLSLLGGSTELAPGPQVMELAQQQNHMPVVEYQSRCSLPQRAQSLDRFRKKRNARCFEKKVRYGVRQEVALRMARNKGQFTSSKMTD-GAYNSGTDQDSAQDDAHPEISCTHCGISSKCTPMMRRGPSGPRTLCNACGLF 244
BLAST of FC878107 vs. ExPASy Swiss-Prot
Match: GAT25_ARATH (GATA transcription factor 25 OS=Arabidopsis thaliana GN=TIFY2A PE=2 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 8.833e-41 Identity = 106/234 (45.30%), Postives = 132/234 (56.41%), Query Frame = 1 Query: 292 HLSYDPHSA--LENGIVVVEDVAHDSGYAAGANE------------------------LSNSSQLTLSFRGQVYVFDSVTPDKVQAVXXXXXXXXXXXX-PQGMEVIPHSQRGIADYPA---KCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKSEGGAL----GWSNAQDPGQDDSPS---ETSCTHCGISSKSTPMMRRGPSGPKSLCNACGL 882 H+ ++ H+ + NG +V+D A D G A G +E QLTLSF+GQVYVFDSV P+KVQAV P G+ PH ++ P + + PQR ASL RFR+KRK R FDKK+RY+VR+EVALRMQRNKGQFTSAK + A W + Q + S + E SC HCGI KSTPMMRRGP+GP++LCNACGL Sbjct: 21 HVQFEHHALHHIHNGSGMVDDQA-DDGNAGGMSEGVETDIPSHPGNVTDNRGEVVDRGSEQGDQLTLSFQGQVYVFDSVLPEKVQAVLLLLGGRELPQAAPPGLGS-PHQNNRVSSLPGTPQRFSIPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQRNKGQFTSAKSNNDEAASAGSSWGSNQTWAIESSEAQHQEISCRHCGIGEKSTPMMRRGPAGPRTLCNACGL 252
BLAST of FC878107 vs. ExPASy Swiss-Prot
Match: GAT27_ARATH (GATA transcription factor 27 OS=Arabidopsis thaliana GN=TIFY2B PE=2 SV=2) HSP 1 Score: 165.236 bits (417), Expect = 4.384e-40 Identity = 92/175 (52.57%), Postives = 110/175 (62.86%), Query Frame = 1 Query: 388 LSNSSQLTLSFRGQVYVFDSVTPDKVQAVXXXXXXXXXXXXPQGMEVIPHSQR---GIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKS--EGGALG--WSNAQD---PGQDDSPSETSCTHCGISSKSTPMMRRGPSGPKSLCNACGL 882 + N QLTLSF+GQVYVFD V+P+KVQAV PH G++ P + + PQR ASL RFR+KRK R FDK +RY+VR+EVALRMQR KGQFTSAK S + G+ G W + Q G + E C HCG S KSTPMMRRGP GP++LCNACGL Sbjct: 74 IENGDQLTLSFQGQVYVFDRVSPEKVQAVLLLLGGREVPHTLPTTLGSPHQNNRVLGLSGTPQRLSVPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKKGQFTSAKSSNDDSGSTGSDWGSNQSWAVEGTETQKPEVLCRHCGTSEKSTPMMRRGPDGPRTLCNACGL 248 The following BLAST results are available for this feature:
BLAST of FC878107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 3
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878107 ID=FC878107; Name=FC878107; organism=Citrus clementina; type=EST; length=887bpback to top |