FC878107

Overview
NameFC878107
Unique NameFC878107
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length887
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10718 contig Ccv1_Contig10718:90..976. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878107 vs. ExPASy Swiss-Prot
Match: GAT26_ARATH (GATA transcription factor 26 OS=Arabidopsis thaliana GN=TIFY1 PE=2 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 3.349e-48
Identity = 100/165 (60.61%), Postives = 118/165 (71.52%), Query Frame = 1
Query:  397 SSQLTLSFRGQVYVFDSVTPDKVQAVXXXXXXXXXXXX-PQGMEVIPHSQR-GIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKSEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPKSLCNACGLF 885
            ++QLT+SFRGQVYVFD+V  DKV AV             PQ ME+        + +Y ++C+ PQRA SLDRFR+KR  RCF+KKVRY VRQEVALRM RNKGQFTS+K ++ GA      QD  QDD+  E SCTHCGISSK TPMMRRGPSGP++LCNACGLF
Sbjct:   81 ANQLTISFRGQVYVFDAVGADKVDAVLSLLGGSTELAPGPQVMELAQQQNHMPVVEYQSRCSLPQRAQSLDRFRKKRNARCFEKKVRYGVRQEVALRMARNKGQFTSSKMTD-GAYNSGTDQDSAQDDAHPEISCTHCGISSKCTPMMRRGPSGPRTLCNACGLF 244          
BLAST of FC878107 vs. ExPASy Swiss-Prot
Match: GAT25_ARATH (GATA transcription factor 25 OS=Arabidopsis thaliana GN=TIFY2A PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 8.833e-41
Identity = 106/234 (45.30%), Postives = 132/234 (56.41%), Query Frame = 1
Query:  292 HLSYDPHSA--LENGIVVVEDVAHDSGYAAGANE------------------------LSNSSQLTLSFRGQVYVFDSVTPDKVQAVXXXXXXXXXXXX-PQGMEVIPHSQRGIADYPA---KCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKSEGGAL----GWSNAQDPGQDDSPS---ETSCTHCGISSKSTPMMRRGPSGPKSLCNACGL 882
            H+ ++ H+   + NG  +V+D A D G A G +E                             QLTLSF+GQVYVFDSV P+KVQAV             P G+   PH    ++  P    + + PQR ASL RFR+KRK R FDKK+RY+VR+EVALRMQRNKGQFTSAK +   A      W + Q    + S +   E SC HCGI  KSTPMMRRGP+GP++LCNACGL
Sbjct:   21 HVQFEHHALHHIHNGSGMVDDQA-DDGNAGGMSEGVETDIPSHPGNVTDNRGEVVDRGSEQGDQLTLSFQGQVYVFDSVLPEKVQAVLLLLGGRELPQAAPPGLGS-PHQNNRVSSLPGTPQRFSIPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQRNKGQFTSAKSNNDEAASAGSSWGSNQTWAIESSEAQHQEISCRHCGIGEKSTPMMRRGPAGPRTLCNACGL 252          
BLAST of FC878107 vs. ExPASy Swiss-Prot
Match: GAT27_ARATH (GATA transcription factor 27 OS=Arabidopsis thaliana GN=TIFY2B PE=2 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 4.384e-40
Identity = 92/175 (52.57%), Postives = 110/175 (62.86%), Query Frame = 1
Query:  388 LSNSSQLTLSFRGQVYVFDSVTPDKVQAVXXXXXXXXXXXXPQGMEVIPHSQR---GIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKS--EGGALG--WSNAQD---PGQDDSPSETSCTHCGISSKSTPMMRRGPSGPKSLCNACGL 882
            + N  QLTLSF+GQVYVFD V+P+KVQAV                   PH      G++  P + + PQR ASL RFR+KRK R FDK +RY+VR+EVALRMQR KGQFTSAK S  + G+ G  W + Q     G +    E  C HCG S KSTPMMRRGP GP++LCNACGL
Sbjct:   74 IENGDQLTLSFQGQVYVFDRVSPEKVQAVLLLLGGREVPHTLPTTLGSPHQNNRVLGLSGTPQRLSVPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKKGQFTSAKSSNDDSGSTGSDWGSNQSWAVEGTETQKPEVLCRHCGTSEKSTPMMRRGPDGPRTLCNACGL 248          
The following BLAST results are available for this feature:
BLAST of FC878107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
GAT26_ARATH3.349e-4860.61GATA transcription factor 26 OS=Arabidopsis thalia... [more]
GAT25_ARATH8.833e-4145.30GATA transcription factor 25 OS=Arabidopsis thalia... [more]
GAT27_ARATH4.384e-4052.57GATA transcription factor 27 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA42CH06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA42CH06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878107 ID=FC878107; Name=FC878107; organism=Citrus clementina; type=EST; length=887bp
AAAAGACGCTGTCGTTTCTGCGACACATAGACAGAGCTTTATTCTTCTTC
CTTCTTACAATTATTCAATTTTTTTTTTTTTAACTCTTTAACTTCTCTTA
ACACTTGGGGTTAGGGTTTCACTCAAAATCTCCAAAAAGTTTTCCCTTTC
GGTAATGCTTCGAAATCCCCTTCATTCGCCCCAATATCACCTATGTACGG
TCAGTCGCAGTCAATGAACATCTCCTCCCAAATGTCCGGTGGTGGTGCCG
CCGCTGATGAAGACGACGTCTCTGTTGCCGCCGATGATCACCATCTCAGC
TACGACCCTCACTCGGCCCTCGAAAACGGCATTGTCGTCGTCGAAGACGT
TGCTCATGATTCCGGCTATGCTGCCGGGGCCAACGAATTGTCTAATTCCA
GCCAGCTCACTCTCTCCTTTCGCGGCCAGGTCTATGTCTTTGATTCCGTC
ACGCCTGATAAGGTTCAAGCAGTGCTGTTATTGTTGGGGGGATGCGAGTT
ATCTTCCAGTCCACAGGGCATGGAAGTAATTCCTCACAGCCAGAGGGGTA
TTGCGGACTATCCTGCTAAATGTACCCAACCACAAAGAGCAGCTTCATTA
GATAGGTTTCGGCAGAAGAGGAAAGAGCGTTGCTTTGATAAGAAAGTTAG
ATACAGTGTCCGGCAAGAGGTTGCTCTCAGGATGCAGCGGAACAAAGGCC
AATTTACTTCAGCCAAGAAGTCTGAAGGGGGAGCTCTTGGTTGGAGTAAT
GCCCAGGATCCAGGACAAGACGACAGCCCATCAGAAACCTCGTGTACACA
TTGTGGCATTAGTTCGAAGTCAACCCCAATGATGCGACGTGGTCCTTCTG
GGCCAAAATCCCTCTGTAATGCCTGTGGTCTTTTTTG
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