FC878111

Overview
NameFC878111
Unique NameFC878111
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length765
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8323 contig Ccv1_Contig8323:48..811. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC878111 vs. ExPASy Swiss-Prot
Match: KADC_SOLTU (Adenylate kinase, chloroplastic OS=Solanum tuberosum GN=ADK PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.365e-19
Identity = 50/99 (50.51%), Postives = 63/99 (63.64%), Query Frame = 2 
Query:  200 RRRGVQWAFIGSPRAKKHVYAEMPSKLLEVPRISMSSLVRQDLSLRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 496
            + + VQW F+G P   K  YA   S LL VP I+   LVR +L     L KQ+A  VN+G++VS++II  LLSKRLE G  +GE GFILDG PR+  QA
Sbjct:   52 KAKTVQWVFLGCPGVGKGTYASRLSTLLGVPHIATGDLVRDELKSSGPLSKQLAEIVNQGKLVSDEIILNLLSKRLESGEAKGEAGFILDGFPRTVRQA 150
[Close]
BLAST of FC878111 vs. ExPASy Swiss-Prot
Match: KADC1_ARATH (Probable adenylate kinase 1, chloroplastic OS=Arabidopsis thaliana GN=At2g37250 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.790e-19
Identity = 49/97 (50.52%), Postives = 64/97 (65.98%), Query Frame = 2 
Query:  206 RGVQWAFIGSPRAKKHVYAEMPSKLLEVPRISMSSLVRQDLSLRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 496
            R VQW F+G P   K  YA   S LL VP I+   LVR++L+    L ++++  VN+G++VS++II  LLSKRLE G  RGE GFILDG PR+  QA
Sbjct:   50 RNVQWVFLGCPGVGKGTYASRLSTLLGVPHIATGDLVREELASSGPLSQKLSEIVNQGKLVSDEIIVDLLSKRLEAGEARGESGFILDGFPRTMRQA 146
The following BLAST results are available for this feature:
BLAST of FC878111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
KADC_SOLTU3.365e-1950.51Adenylate kinase, chloroplastic OS=Solanum tuberos... [more]
KADC1_ARATH9.790e-1950.52Probable adenylate kinase 1, chloroplastic OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA64AE03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA64AE03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878111 ID=FC878111; Name=FC878111; organism=Citrus clementina; type=EST; length=765bp
AGCCATCGCAGTGACGGCTGCGCCTCTATCATATCGGCTTTTCCAGCTCA
CTACGAGCCGATTCTACGGCTCCGTCGCAGCAGCTGAGCCGCTTTTCGAT
CCTGATAATTACTACAGTTATTACCAAGCCGAGTCGGACTCGGACCAGCA
CCGCGACTCGCTCCGCTCCGTTACATTACCTGACACGGAGGGCCGGGAAA
GAAGAAGAGGAGTGCAGTGGGCTTTCATTGGAAGCCCACGCGCCAAGAAG
CACGTGTACGCTGAAATGCCGTCGAAGCTTCTAGAAGTTCCTCGCATTTC
TATGTCCAGTCTCGTCCGCCAGGACCTCAGTCTTCGCTCTTCTCTACACA
AACAGATTGCAAATGCAGTGAATAGAGGGGAAGTTGTTTCGGAGGATATA
ATATTTGGGCTGTTGTCAAAGAGGTTGGAAGATGGTTATTACAGAGGTGA
GATTGGTTTTATTCTGGATGGATTACCTCGTTCCCGGATCCAAGCTGTGA
GTCCTTTACTAAATTTTGGCTGGCTTTTAAAAATAAATGCACACACATCA
GTGATTGAAAATGTTGTTGTAGTTGTCAAATTTAAAGATCACAGATAGTC
AAATGCATACTTTTTCTTGTAATCTTGATGATTATGCTTCAAGGACTGCT
TGGTGCTTATGTTAAGTCTCGTCTTTCTTTTCATATCTTGTATCTACTAT
AGGAGATTCTTGACCAACTTGCTGAGATTGATTTGGTTGTAAACTTCAAA
TGTGCAGACAATTTC
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