FC878112
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC878112 vs. ExPASy Swiss-Prot
Match: WDR70_XENLA (WD repeat-containing protein 70 OS=Xenopus laevis GN=wdr70 PE=2 SV=2) HSP 1 Score: 129.798 bits (325), Expect = 1.598e-29 Identity = 84/229 (36.68%), Postives = 116/229 (50.66%), Query Frame = 2 Query: 74 FGKQAKSQTPLEKIHNATRRSDPLTTTTAATDNEKNNLPSISSSSKEWLGTLRNPKSSDAAPIGXXXXXXRQQELEADDDDVVIGPPRPPQQQEDDADSVMIGPPRPPAXXXXXXXXXXXXXXXXXNRHQIPMSNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVK 760 FGK+A++ LE + TRR+ + EK S S + + K + A+ E DD +IGPP PP D D +IGPP PP IP S+EI L+ TK VSAL +D SG+R+++G YDY VR +DF GM++ LQ+FR L+P E HQ+++L +S T D L V G++QAK+ DRDG + E VK Sbjct: 18 FGKKART-FDLEAMFEQTRRTAVERSKQTLEAREKEEQLSNKSPVIKGAPSSSGQKKTKAS--------GSSSGSEDSSDDELIGPPLPPNVTGDHGDE-LIGPPLPPGYKDSDDEDDEEHEDDDNPVKDIPDSHEITLQHGTKTVSALGLDPSGARLVTGGYDYDVRFWDFAGMDASLQAFRSLQPCECHQIKSLQYSNTGDVILVVAGNSQAKVLDRDGFPVMECVK 236
BLAST of FC878112 vs. ExPASy Swiss-Prot
Match: WDR70_XENTR (WD repeat-containing protein 70 OS=Xenopus tropicalis GN=wdr70 PE=2 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.496e-27 Identity = 81/229 (35.37%), Postives = 116/229 (50.66%), Query Frame = 2 Query: 74 FGKQAKSQTPLEKIHNATRRSDPLTTTTAATDNEKNNLPSISSSSKEWLGTLRNPKSSDAAPIGXXXXXXRQQELEADDDDVVIGPPRPPQQQEDDADSVMIGPPRPPAXXXXXXXXXXXXXXXXXNRHQIPMSNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVK 760 FGK+A++ LE + TRR+ + EK S S + + + K++D + E DD +IGPP P D D +IGPP P IP S+EI L+ TK VSAL +D SG+R+++G +DY VR +DF GM++ LQ+FR L+P E HQ+++L +S T D L V G++QAK+ DRDG + E VK Sbjct: 18 FGKKART-FDLEAMFEQTRRTAVERSKKTLEAREKEEQISNKSPVMKDVPSSSRQKNTDTSSSSSGS--------EDSSDDELIGPPVPSNLTGDHGDE-LIGPPLPSGYKDSDDEDEEQHEDDDNPVKGIPDSHEITLQHGTKTVSALGLDPSGARLVTGGFDYDVRFWDFAGMDASLQAFRSLQPCECHQIKSLQYSNTGDVILVVAGNSQAKVLDRDGFPVMECVK 236
BLAST of FC878112 vs. ExPASy Swiss-Prot
Match: WDR70_RAT (WD repeat-containing protein 70 OS=Rattus norvegicus GN=Wdr70 PE=2 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.954e-27 Identity = 81/241 (33.61%), Postives = 121/241 (50.21%), Query Frame = 2 Query: 74 FGKQAKSQTPLEKIHNATRRSDPLTTTTAATDNEKNNLPSISSSSKEWLGTLRNPKSSDAAPIGXXXXXXRQQELEADD------DDVVIGPPRPPQQQEDDADSV---MIGPPRPPAXXXXXXXXXXXXXXXXXNR---HQIPMSNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVK 760 FGK+A++ LE + TRR+ + EK + ++ L + SS +A R D DD +IGPP PP+ ++V ++GP PP H+IP S+EI LK TK VSAL +D SG+R+++G YDY V+ +DF GM++ ++FR L+P E HQ+++L +S T D L V+GS+QAK+ DRDG + E +K Sbjct: 30 FGKKART-FDLEAMFEQTRRTAVERSRKTLEAREKEEEMNREKELRKQLEDIEPTPSSSSAVRERSKSSSRDTSSSDSDHSSGSSDDELIGPPLPPEMVGGPVNTVDEDILGPLPPPLCEEGEDDDDDDLEDEGEEDNPIHRIPDSHEITLKHGTKTVSALGLDPSGARLVTGGYDYDVKFWDFAGMDASFKAFRSLQPCECHQIKSLQYSNTGDMILVVSGSSQAKVIDRDGFEVMECIK 269
BLAST of FC878112 vs. ExPASy Swiss-Prot
Match: WDR70_MOUSE (WD repeat-containing protein 70 OS=Mus musculus GN=Wdr70 PE=1 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.654e-26 Identity = 80/243 (32.92%), Postives = 124/243 (51.03%), Query Frame = 2 Query: 74 FGKQAKSQTPLEKIHNATRRSDPLTTTTAATDNEKNNLPSISSSSKEWLGTLRNPKSSDAAPIGXXXXXXRQ---QELEADD-----DDVVIGPPRPPQQQEDDADSV---MIGPPRPPAXXXXXXXXXXXXXXXXXNRH---QIPMSNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVK 760 FGK+A++ LE + TRR+ + EK + ++ + + SS +A R + E+DD DD +IGPP PP+ + +V +GP PP + +IP S+EI L+ TK VSAL +D SG+R+++G YDY V+ +DF GM++ ++FR L+P E HQ+++L +S T D L V+GS+QAK+ DRDG + E +K Sbjct: 30 FGKKART-FDLEAMFEQTRRTAVERSRKTLEAREKEEEMNREKELRKQIEDMEPAPSSSSAARERSQSSCRDTSSSDSESDDSSDSSDDELIGPPLPPKMVGESVTTVDEGTLGPLPPPLCEEGEDDDDDELDDEGEEDNPVQRIPDSHEITLRHGTKTVSALGLDPSGARLVTGGYDYDVKFWDFAGMDASFKAFRSLQPCECHQIKSLQYSNTGDMILVVSGSSQAKVIDRDGFEVMECIK 271
BLAST of FC878112 vs. ExPASy Swiss-Prot
Match: WDR70_HUMAN (WD repeat-containing protein 70 OS=Homo sapiens GN=WDR70 PE=1 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 2.160e-26 Identity = 80/240 (33.33%), Postives = 123/240 (51.25%), Query Frame = 2 Query: 74 FGKQAKSQTPLEKIHNATRRS----DPLTTTTAATDNEKNNLPSISSSSKEWLGTL-RNPKSSDAAPIGXXXXXXRQQELEADD-DDVVIGPPRPPQQQEDDADSV---MIGPPRPPAXXXXXXXXXXXXXXXXXNR--HQIPMSNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVK 760 FGK+A++ LE + TRR+ T + E N + +++ T R+ D + + E +D DD +IGPP PP+ + + ++GP PP H+IP S+EI LK TK VSAL +D SG+R+++G YDY V+ +DF GM++ ++FR L+P E HQ+++L +S T D L V+GS+QAK+ DRDG + E +K Sbjct: 30 FGKKART-FDLEAMFEQTRRTAVERSRKTLEAREKEEEMNREKELRRQNEDIEPTSSRSNVVRDCSKSSSRDTSSSESEQSSDSSDDELIGPPLPPKMVGKPVNFMEEDILGPLPPPLNEEEEEAEEEEEEEEEEENPVHKIPDSHEITLKHGTKTVSALGLDPSGARLVTGGYDYDVKFWDFAGMDASFKAFRSLQPCECHQIKSLQYSNTGDMILVVSGSSQAKVIDRDGFEVMECIK 268
BLAST of FC878112 vs. ExPASy Swiss-Prot
Match: WDR70_BOVIN (WD repeat-containing protein 70 OS=Bos taurus GN=WDR70 PE=2 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.400e-25 Identity = 77/240 (32.08%), Postives = 121/240 (50.42%), Query Frame = 2 Query: 74 FGKQAKSQTPLEKIHNATRRS----DPLTTTTAATDNEKNNLPSISSSSKEWLGTLRNPKSSDAAPIGXXXXXXRQQELEADD--DDVVIGPPRPPQQQEDDADSV---MIGPPRPPAXXXXXXXXXXXXXXXXXNR--HQIPMSNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVK 760 FGK+A++ LE + TRR+ T + E N + +++ T + A + E+ D DD +IGPP P + E+ + + ++GP PP +IP S+EI +K TK VSAL +D SG+R+++G YDY V+ +DF GM++ ++FR L+P E HQ+++L +S T D L V+GS+QAK+ DRDG + E +K Sbjct: 28 FGKKART-FDLEAMFEQTRRTAVERSRKTLEAREREEEMNREKELRRQNEDLEPTSSGSNVARACSKSSSRDTSSSESDESSDSSDDELIGPPLPLKMVEEPVNPMEEGVLGPLPPPLAEDVEEEDDDDGDSEEEENPVRKIPDSHEITIKHGTKTVSALGLDPSGARLVTGGYDYDVKFWDFAGMDASFKAFRSLQPCECHQIKSLQYSNTGDMILVVSGSSQAKVIDRDGFEVMECIK 266
BLAST of FC878112 vs. ExPASy Swiss-Prot
Match: GAD1_DROME (Gastrulation defective protein 1 homolog OS=Drosophila melanogaster GN=CG5543 PE=2 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 4.363e-19 Identity = 44/92 (47.83%), Postives = 68/92 (73.91%), Query Frame = 2 Query: 461 QIPMSNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDG 736 +IP ++E+ ++ ++ V ALA D SG+R++SGS DY + +DF GM+S ++SFRQL+P E H +R+L +S T D L ++G+AQAK+ DRDG Sbjct: 169 RIPYTHEVQMQHGSRAVLALAGDPSGARLVSGSIDYDMCFWDFAGMDSSMRSFRQLQPCENHPIRSLQYSVTGDMILVISGNAQAKVLDRDG 260 The following BLAST results are available for this feature:
BLAST of FC878112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878112 ID=FC878112; Name=FC878112; organism=Citrus clementina; type=EST; length=760bpback to top |