FC878112

Overview
NameFC878112
Unique NameFC878112
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length760
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878112_ssr410 microsatellite FC878112_ssr410:410..427. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4698 contig Ccv1_Contig4698:93..855. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878112 vs. ExPASy Swiss-Prot
Match: WDR70_XENLA (WD repeat-containing protein 70 OS=Xenopus laevis GN=wdr70 PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.598e-29
Identity = 84/229 (36.68%), Postives = 116/229 (50.66%), Query Frame = 2
Query:   74 FGKQAKSQTPLEKIHNATRRSDPLTTTTAATDNEKNNLPSISSSSKEWLGTLRNPKSSDAAPIGXXXXXXRQQELEADDDDVVIGPPRPPQQQEDDADSVMIGPPRPPAXXXXXXXXXXXXXXXXXNRHQIPMSNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVK 760
            FGK+A++   LE +   TRR+    +       EK    S  S   +   +    K + A+              E   DD +IGPP PP    D  D  +IGPP PP                      IP S+EI L+  TK VSAL +D SG+R+++G YDY VR +DF GM++ LQ+FR L+P E HQ+++L +S T D  L V G++QAK+ DRDG  + E VK
Sbjct:   18 FGKKART-FDLEAMFEQTRRTAVERSKQTLEAREKEEQLSNKSPVIKGAPSSSGQKKTKAS--------GSSSGSEDSSDDELIGPPLPPNVTGDHGDE-LIGPPLPPGYKDSDDEDDEEHEDDDNPVKDIPDSHEITLQHGTKTVSALGLDPSGARLVTGGYDYDVRFWDFAGMDASLQAFRSLQPCECHQIKSLQYSNTGDVILVVAGNSQAKVLDRDGFPVMECVK 236          
BLAST of FC878112 vs. ExPASy Swiss-Prot
Match: WDR70_XENTR (WD repeat-containing protein 70 OS=Xenopus tropicalis GN=wdr70 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.496e-27
Identity = 81/229 (35.37%), Postives = 116/229 (50.66%), Query Frame = 2
Query:   74 FGKQAKSQTPLEKIHNATRRSDPLTTTTAATDNEKNNLPSISSSSKEWLGTLRNPKSSDAAPIGXXXXXXRQQELEADDDDVVIGPPRPPQQQEDDADSVMIGPPRPPAXXXXXXXXXXXXXXXXXNRHQIPMSNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVK 760
            FGK+A++   LE +   TRR+    +       EK    S  S   + + +    K++D +              E   DD +IGPP P     D  D  +IGPP P                       IP S+EI L+  TK VSAL +D SG+R+++G +DY VR +DF GM++ LQ+FR L+P E HQ+++L +S T D  L V G++QAK+ DRDG  + E VK
Sbjct:   18 FGKKART-FDLEAMFEQTRRTAVERSKKTLEAREKEEQISNKSPVMKDVPSSSRQKNTDTSSSSSGS--------EDSSDDELIGPPVPSNLTGDHGDE-LIGPPLPSGYKDSDDEDEEQHEDDDNPVKGIPDSHEITLQHGTKTVSALGLDPSGARLVTGGFDYDVRFWDFAGMDASLQAFRSLQPCECHQIKSLQYSNTGDVILVVAGNSQAKVLDRDGFPVMECVK 236          
BLAST of FC878112 vs. ExPASy Swiss-Prot
Match: WDR70_RAT (WD repeat-containing protein 70 OS=Rattus norvegicus GN=Wdr70 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.954e-27
Identity = 81/241 (33.61%), Postives = 121/241 (50.21%), Query Frame = 2
Query:   74 FGKQAKSQTPLEKIHNATRRSDPLTTTTAATDNEKNNLPSISSSSKEWLGTLRNPKSSDAAPIGXXXXXXRQQELEADD------DDVVIGPPRPPQQQEDDADSV---MIGPPRPPAXXXXXXXXXXXXXXXXXNR---HQIPMSNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVK 760
            FGK+A++   LE +   TRR+    +       EK    +     ++ L  +    SS +A         R       D      DD +IGPP PP+      ++V   ++GP  PP                       H+IP S+EI LK  TK VSAL +D SG+R+++G YDY V+ +DF GM++  ++FR L+P E HQ+++L +S T D  L V+GS+QAK+ DRDG  + E +K
Sbjct:   30 FGKKART-FDLEAMFEQTRRTAVERSRKTLEAREKEEEMNREKELRKQLEDIEPTPSSSSAVRERSKSSSRDTSSSDSDHSSGSSDDELIGPPLPPEMVGGPVNTVDEDILGPLPPPLCEEGEDDDDDDLEDEGEEDNPIHRIPDSHEITLKHGTKTVSALGLDPSGARLVTGGYDYDVKFWDFAGMDASFKAFRSLQPCECHQIKSLQYSNTGDMILVVSGSSQAKVIDRDGFEVMECIK 269          
BLAST of FC878112 vs. ExPASy Swiss-Prot
Match: WDR70_MOUSE (WD repeat-containing protein 70 OS=Mus musculus GN=Wdr70 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.654e-26
Identity = 80/243 (32.92%), Postives = 124/243 (51.03%), Query Frame = 2
Query:   74 FGKQAKSQTPLEKIHNATRRSDPLTTTTAATDNEKNNLPSISSSSKEWLGTLRNPKSSDAAPIGXXXXXXRQ---QELEADD-----DDVVIGPPRPPQQQEDDADSV---MIGPPRPPAXXXXXXXXXXXXXXXXXNRH---QIPMSNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVK 760
            FGK+A++   LE +   TRR+    +       EK    +     ++ +  +    SS +A         R     + E+DD     DD +IGPP PP+   +   +V    +GP  PP                    +   +IP S+EI L+  TK VSAL +D SG+R+++G YDY V+ +DF GM++  ++FR L+P E HQ+++L +S T D  L V+GS+QAK+ DRDG  + E +K
Sbjct:   30 FGKKART-FDLEAMFEQTRRTAVERSRKTLEAREKEEEMNREKELRKQIEDMEPAPSSSSAARERSQSSCRDTSSSDSESDDSSDSSDDELIGPPLPPKMVGESVTTVDEGTLGPLPPPLCEEGEDDDDDELDDEGEEDNPVQRIPDSHEITLRHGTKTVSALGLDPSGARLVTGGYDYDVKFWDFAGMDASFKAFRSLQPCECHQIKSLQYSNTGDMILVVSGSSQAKVIDRDGFEVMECIK 271          
BLAST of FC878112 vs. ExPASy Swiss-Prot
Match: WDR70_HUMAN (WD repeat-containing protein 70 OS=Homo sapiens GN=WDR70 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.160e-26
Identity = 80/240 (33.33%), Postives = 123/240 (51.25%), Query Frame = 2
Query:   74 FGKQAKSQTPLEKIHNATRRS----DPLTTTTAATDNEKNNLPSISSSSKEWLGTL-RNPKSSDAAPIGXXXXXXRQQELEADD-DDVVIGPPRPPQQQEDDADSV---MIGPPRPPAXXXXXXXXXXXXXXXXXNR--HQIPMSNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVK 760
            FGK+A++   LE +   TRR+       T      + E N    +   +++   T  R+    D +          + E  +D  DD +IGPP PP+      + +   ++GP  PP                      H+IP S+EI LK  TK VSAL +D SG+R+++G YDY V+ +DF GM++  ++FR L+P E HQ+++L +S T D  L V+GS+QAK+ DRDG  + E +K
Sbjct:   30 FGKKART-FDLEAMFEQTRRTAVERSRKTLEAREKEEEMNREKELRRQNEDIEPTSSRSNVVRDCSKSSSRDTSSSESEQSSDSSDDELIGPPLPPKMVGKPVNFMEEDILGPLPPPLNEEEEEAEEEEEEEEEEENPVHKIPDSHEITLKHGTKTVSALGLDPSGARLVTGGYDYDVKFWDFAGMDASFKAFRSLQPCECHQIKSLQYSNTGDMILVVSGSSQAKVIDRDGFEVMECIK 268          
BLAST of FC878112 vs. ExPASy Swiss-Prot
Match: WDR70_BOVIN (WD repeat-containing protein 70 OS=Bos taurus GN=WDR70 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.400e-25
Identity = 77/240 (32.08%), Postives = 121/240 (50.42%), Query Frame = 2
Query:   74 FGKQAKSQTPLEKIHNATRRS----DPLTTTTAATDNEKNNLPSISSSSKEWLGTLRNPKSSDAAPIGXXXXXXRQQELEADD--DDVVIGPPRPPQQQEDDADSV---MIGPPRPPAXXXXXXXXXXXXXXXXXNR--HQIPMSNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVK 760
            FGK+A++   LE +   TRR+       T      + E N    +   +++   T      + A            +  E+ D  DD +IGPP P +  E+  + +   ++GP  PP                       +IP S+EI +K  TK VSAL +D SG+R+++G YDY V+ +DF GM++  ++FR L+P E HQ+++L +S T D  L V+GS+QAK+ DRDG  + E +K
Sbjct:   28 FGKKART-FDLEAMFEQTRRTAVERSRKTLEAREREEEMNREKELRRQNEDLEPTSSGSNVARACSKSSSRDTSSSESDESSDSSDDELIGPPLPLKMVEEPVNPMEEGVLGPLPPPLAEDVEEEDDDDGDSEEEENPVRKIPDSHEITIKHGTKTVSALGLDPSGARLVTGGYDYDVKFWDFAGMDASFKAFRSLQPCECHQIKSLQYSNTGDMILVVSGSSQAKVIDRDGFEVMECIK 266          
BLAST of FC878112 vs. ExPASy Swiss-Prot
Match: GAD1_DROME (Gastrulation defective protein 1 homolog OS=Drosophila melanogaster GN=CG5543 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.363e-19
Identity = 44/92 (47.83%), Postives = 68/92 (73.91%), Query Frame = 2
Query:  461 QIPMSNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDG 736
            +IP ++E+ ++  ++ V ALA D SG+R++SGS DY +  +DF GM+S ++SFRQL+P E H +R+L +S T D  L ++G+AQAK+ DRDG
Sbjct:  169 RIPYTHEVQMQHGSRAVLALAGDPSGARLVSGSIDYDMCFWDFAGMDSSMRSFRQLQPCENHPIRSLQYSVTGDMILVISGNAQAKVLDRDG 260          
The following BLAST results are available for this feature:
BLAST of FC878112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
WDR70_XENLA1.598e-2936.68WD repeat-containing protein 70 OS=Xenopus laevis ... [more]
WDR70_XENTR1.496e-2735.37WD repeat-containing protein 70 OS=Xenopus tropica... [more]
WDR70_RAT1.954e-2733.61WD repeat-containing protein 70 OS=Rattus norvegic... [more]
WDR70_MOUSE1.654e-2632.92WD repeat-containing protein 70 OS=Mus musculus GN... [more]
WDR70_HUMAN2.160e-2633.33WD repeat-containing protein 70 OS=Homo sapiens GN... [more]
WDR70_BOVIN1.400e-2532.08WD repeat-containing protein 70 OS=Bos taurus GN=W... [more]
GAD1_DROME4.363e-1947.83Gastrulation defective protein 1 homolog OS=Drosop... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA88DH06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA88DH06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878112 ID=FC878112; Name=FC878112; organism=Citrus clementina; type=EST; length=760bp
TTTGTGCGAACGAAACAAAATGGAAGACGAGGCAGAGATATATGATGGAA
TTAGGGCCCAATTTCCTCTCACATTCGGGAAACAGGCAAAATCCCAAACG
CCCCTTGAGAAAATCCACAACGCCACTCGCCGATCCGACCCCTTAACTAC
AACAACCGCCGCTACCGATAATGAGAAAAACAACCTGCCGTCTATCTCTT
CCTCCTCCAAGGAATGGCTGGGCACGCTTCGAAACCCTAAGTCTTCGGAC
GCTGCACCAATTGGACCGCCACCTCCGCCTCCCCGGCAGCAGGAACTGGA
AGCCGATGACGATGACGTGGTAATTGGGCCTCCTCGGCCTCCGCAGCAGC
AAGAGGACGATGCTGACAGCGTAATGATTGGGCCTCCTCGGCCGCCGGCA
GAGTCAGGAGATGATGATGATGATGATGTTGATGAAGAGGAGGGAGAGGA
GAATCGGCATCAAATTCCGATGAGCAATGAGATTGTACTCAAAGGGCATA
CTAAGATTGTTTCAGCTCTTGCAGTTGATCACTCTGGTTCTAGAGTTCTT
TCTGGAAGTTATGACTATACGGTACGCATGTATGACTTTCAAGGAATGAA
TTCCCGTCTACAATCTTTTAGGCAGCTTGAGCCATCTGAGGGTCATCAAG
TTCGTAACTTGAGCTGGAGTCCAACATCTGACCGTTTTCTCTGTGTGACT
GGTTCTGCTCAAGCTAAGATATATGACCGAGATGGACTTACTCTAGGAGA
GTTTGTGAAG
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