FC878121

Overview
NameFC878121
Unique NameFC878121
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length869
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878121_ssr208 microsatellite FC878121_ssr208:208..219. BLAST: Citrus ESTs to Prunus persica proteins V1
FC878121_ssr572 microsatellite FC878121_ssr572:572..592. BLAST: Citrus ESTs to Prunus persica proteins V1
FC878121_ssr656 microsatellite FC878121_ssr656:656..667. BLAST: Citrus ESTs to Prunus persica proteins V1
FC878121_ssr668 microsatellite FC878121_ssr668:668..682. BLAST: Citrus ESTs to Prunus persica proteins V1
FC878121_ssr1 microsatellite FC878121_ssr1:1..12. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5069 contig Ccv1_Contig5069:51..919. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878121 vs. ExPASy Swiss-Prot
Match: DOF54_ARATH (Dof zinc finger protein DOF5.4 OS=Arabidopsis thaliana GN=DOF5.4 PE=2 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 3.252e-32
Identity = 63/78 (80.77%), Postives = 66/78 (84.62%), Query Frame = 2
Query:  248 HQN-----HQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTKRSSKPKPNSESSA 466
            HQN     HQ+LKCPRC+SLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRK KRS   +  S SSA
Sbjct:   40 HQNNILNHHQSLKCPRCNSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKAKRSKTKQVPSSSSA 117          
BLAST of FC878121 vs. ExPASy Swiss-Prot
Match: DOF57_ARATH (Dof zinc finger protein DOF5.7 OS=Arabidopsis thaliana GN=DOF5.7 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.496e-29
Identity = 56/77 (72.73%), Postives = 64/77 (83.12%), Query Frame = 2
Query:  251 QNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTKRSSKPK------PNSESS 463
            Q+ Q LKCPRC+S NTKFCYYNNY+LSQPRHFCK+CRRYWT+GG LRNVP+GGGCRKTK+S KP       P+S SS
Sbjct:   36 QDQQNLKCPRCNSPNTKFCYYNNYSLSQPRHFCKSCRRYWTRGGALRNVPIGGGCRKTKKSIKPNSSMNTLPSSSSS 112          
BLAST of FC878121 vs. ExPASy Swiss-Prot
Match: DOF17_ARATH (Dof zinc finger protein DOF1.7 OS=Arabidopsis thaliana GN=DOF1.7 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.150e-27
Identity = 51/65 (78.46%), Postives = 56/65 (86.15%), Query Frame = 2
Query:  260 QALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTKRSSKPKPNS 454
            + LKCPRCDS NTKFCYYNNYNLSQPRHFCKNCRRYWTKGG LRN+PVGGG RK+ + S   P+S
Sbjct:   31 EQLKCPRCDSPNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGTRKSNKRSGSSPSS 95          
BLAST of FC878121 vs. ExPASy Swiss-Prot
Match: DOF22_ARATH (Dof zinc finger protein DOF2.2 OS=Arabidopsis thaliana GN=DOF2.2 PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 7.016e-27
Identity = 50/68 (73.53%), Postives = 56/68 (82.35%), Query Frame = 2
Query:  263 ALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTKRSSKPKPNSESSA 466
            ALKCPRCDS NTKFCY+NNYNL+QPRHFCK CRRYWT+GG LRNVPVGGGCR+ K+       S SS+
Sbjct:   93 ALKCPRCDSANTKFCYFNNYNLTQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKGKSGNSKSSSSS 160          
BLAST of FC878121 vs. ExPASy Swiss-Prot
Match: DOF53_ARATH (Dof zinc finger protein DOF5.3 OS=Arabidopsis thaliana GN=DOF5.3 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.164e-27
Identity = 50/70 (71.43%), Postives = 57/70 (81.43%), Query Frame = 2
Query:  245 PHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTKRSSKPKPNS 454
            P     AL+CPRCDS NTKFCYYNNY+L+QPR+FCK+CRRYWTKGG LRN+PVGGGCRK KRS+     S
Sbjct:   48 PQPPELALRCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNIPVGGGCRKNKRSTSSAARS 117          
BLAST of FC878121 vs. ExPASy Swiss-Prot
Match: DOF56_ARATH (Dof zinc finger protein DOF5.6 OS=Arabidopsis thaliana GN=DOF5.6 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 1.163e-26
Identity = 50/74 (67.57%), Postives = 60/74 (81.08%), Query Frame = 2
Query:  245 PHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTKRSSKPKPNSESSA 466
            PH + Q  KCPRC+S +TKFCYYNNY+LSQPR+FCK CRRYWTKGG LRN+PVGGGCRK K+ S    +S +S+
Sbjct:   68 PHDHPQ--KCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKPSSSNSSSSTSS 139          

HSP 2 Score: 21.9422 bits (45), Expect = 1.163e-26
Identity = 10/26 (38.46%), Postives = 15/26 (57.69%), Query Frame = 3
Query:  171 CKTSTQSAEEGYSAAAVVTGGYGLIP 248
            C T  Q++    +AAA++ GG  L P
Sbjct:   42 CSTRPQASAVAVAAAALMDGGRRLRP 67          
BLAST of FC878121 vs. ExPASy Swiss-Prot
Match: DOF11_ARATH (Dof zinc finger protein DOF1.1 OS=Arabidopsis thaliana GN=DOF1.1 PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 1.197e-26
Identity = 52/84 (61.90%), Postives = 63/84 (75.00%), Query Frame = 2
Query:  266 LKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTKRSSK--PKPNSESSAXXXXXXXXEAPAAGE 511
            LKCPRCDS NTKFCYYNNYNL+QPRHFCK CRRYWT+GG LRNVPVGGGCR+  +  K     +S SS+        ++P++G+
Sbjct:   77 LKCPRCDSSNTKFCYYNNYNLTQPRHFCKGCRRYWTQGGALRNVPVGGGCRRNNKKGKNGNLKSSSSSSKQSSSVNAQSPSSGQ 160          
BLAST of FC878121 vs. ExPASy Swiss-Prot
Match: DOF31_ARATH (Dof zinc finger protein DOF3.1 OS=Arabidopsis thaliana GN=DOF3.1 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 2.666e-26
Identity = 53/69 (76.81%), Postives = 58/69 (84.06%), Query Frame = 2
Query:  260 QALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRK--TKRSSKPKPNSES 460
            + LKCPRCDS NTKFCYYNNYNLSQPRHFCK+CRRYWTKGG LRNVPVGGG RK  TKRS+    ++ S
Sbjct:   27 EQLKCPRCDSPNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGALRNVPVGGGSRKNATKRSTSSSSSASS 95          
BLAST of FC878121 vs. ExPASy Swiss-Prot
Match: DOF24_ARATH (Dof zinc finger protein DOF2.4 OS=Arabidopsis thaliana GN=DOF2.4 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.940e-26
Identity = 47/67 (70.15%), Postives = 57/67 (85.07%), Query Frame = 2
Query:  263 ALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTKRSSKPKPNSESS 463
            ALKCPRC+S NTKFCY+NNY+L+QPRHFCK CRRYWT+GG LRNVPVGGGCR+ +R+     N+ +S
Sbjct:   88 ALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNRRTKSNSNNNNNS 154          
BLAST of FC878121 vs. ExPASy Swiss-Prot
Match: PBF_MAIZE (Dof zinc finger protein PBF OS=Zea mays GN=PBF PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.758e-26
Identity = 52/76 (68.42%), Postives = 61/76 (80.26%), Query Frame = 2
Query:  239 PHPHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTKRSSKPKPNSESSA 466
            P P Q  +ALKCPRCDS NTKFCYYNNY++SQPR+FCK CRRYWT GG LRNVP+GGGCRK K +S+    S +S+
Sbjct:   52 PRP-QLPEALKCPRCDSNNTKFCYYNNYSMSQPRYFCKACRRYWTHGGTLRNVPIGGGCRKNKHASRFVLGSHTSS 126          
The following BLAST results are available for this feature:
BLAST of FC878121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
DOF54_ARATH3.252e-3280.77Dof zinc finger protein DOF5.4 OS=Arabidopsis thal... [more]
DOF57_ARATH7.496e-2972.73Dof zinc finger protein DOF5.7 OS=Arabidopsis thal... [more]
DOF17_ARATH3.150e-2778.46Dof zinc finger protein DOF1.7 OS=Arabidopsis thal... [more]
DOF22_ARATH7.016e-2773.53Dof zinc finger protein DOF2.2 OS=Arabidopsis thal... [more]
DOF53_ARATH9.164e-2771.43Dof zinc finger protein DOF5.3 OS=Arabidopsis thal... [more]
DOF56_ARATH1.163e-2667.57Dof zinc finger protein DOF5.6 OS=Arabidopsis thal... [more]
DOF11_ARATH1.197e-2661.90Dof zinc finger protein DOF1.1 OS=Arabidopsis thal... [more]
DOF31_ARATH2.666e-2676.81Dof zinc finger protein DOF3.1 OS=Arabidopsis thal... [more]
DOF24_ARATH5.940e-2670.15Dof zinc finger protein DOF2.4 OS=Arabidopsis thal... [more]
PBF_MAIZE7.758e-2668.42Dof zinc finger protein PBF OS=Zea mays GN=PBF PE=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA3CA08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA3CA08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878121 ID=FC878121; Name=FC878121; organism=Citrus clementina; type=EST; length=869bp
CTTTCTTTCTTTCATGTTTCTGTTTTTTATCATTTTGTTGAAAATACAAC
AAATGTGAACGACGGTTTTTTTTTTCCTTCCCAGTAAATCCTAACAGCTA
GATTAATCAAAATCTTTCTGTTTCGTCTTAATTGCAAAGAAAAACTTATC
TAAACAGCACTTGTACGGAATGCAAGACATCCACTCAATCGGCGGAGGAA
GGTTATTCGGCGGCGGCGGTGGTGACAGGCGGCTACGGCCTCATCCCCAC
CAGAACCACCAGGCTCTGAAGTGCCCGCGTTGTGACTCTCTAAACACAAA
ATTCTGTTATTACAACAACTACAATCTATCCCAGCCCCGCCACTTCTGCA
AGAACTGCCGCCGTTACTGGACCAAAGGCGGCGTCCTGCGTAACGTCCCC
GTCGGAGGAGGCTGCCGGAAGACCAAGCGTAGCTCAAAGCCGAAACCCAA
CTCAGAATCATCAGCTCAAACGCAAACGCAGACACAAACCGAAGCGCCAG
CTGCTGGGGAAAGAGATCGTAAGGCGAACTCTCATTCGAGTAGTGAAAGC
TCTAGCACTCTCACCGTCACGAATAATAATAATAATAATAATACGAGTGT
TGAAACTGTGTCCGTGCATTCTTCGAGTTCAGTGTCGAATGTGTTGAGTG
CCATGAACAACAACAACAATAATAATAATAATGATCCTGGTTTTGAGACT
GCACCGACTACTGCTTTGCTCGATCAGGCATCGTCTGATTGCGGGATATT
TTCGGAAATTGGGAGTTTCACGAGTCTGATTACATCCTCGAATGAAGCTT
TGCCTTTTGGGTTCAGTAATCTGTTGAATAATGCTCAGCAAAATCTTGAG
CATGTTCAAAATGAGCAGC
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