FC878125

Overview
NameFC878125
Unique NameFC878125
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878125_ssr450 microsatellite FC878125_ssr450:450..461. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13721 contig Ccv1_Contig13721:103..922. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878125 vs. ExPASy Swiss-Prot
Match: WRK22_ARATH (WRKY transcription factor 22 OS=Arabidopsis thaliana GN=WRKY22 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.419e-42
Identity = 79/87 (90.80%), Postives = 82/87 (94.25%), Query Frame = 3
Query:  558 KNQLKRVCHVPAEGLSSDVWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGST 818
            K Q K+VCHV AE L+SDVWAWRKYGQKPIKGSPYPRGYYRCS+SKGCLARKQVERNRSDP MFIVTYTAEHNHPAPTHRNSLAGST
Sbjct:  112 KIQHKKVCHVAAEALNSDVWAWRKYGQKPIKGSPYPRGYYRCSTSKGCLARKQVERNRSDPKMFIVTYTAEHNHPAPTHRNSLAGST 198          
BLAST of FC878125 vs. ExPASy Swiss-Prot
Match: WRK27_ARATH (Probable WRKY transcription factor 27 OS=Arabidopsis thaliana GN=WRKY27 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.373e-37
Identity = 72/88 (81.82%), Postives = 76/88 (86.36%), Query Frame = 3
Query:  558 KNQLKR-VCHVPAEGLSSDVWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGST 818
            KNQ KR +CHV  E LSSD+WAWRKYGQKPIKGSPYPR YYRCSSSKGCLARKQVER+  DP +FIVTYT EH HP PTHRNSLAGST
Sbjct:  148 KNQQKRTICHVTQENLSSDLWAWRKYGQKPIKGSPYPRNYYRCSSSKGCLARKQVERSNLDPNIFIVTYTGEHTHPRPTHRNSLAGST 235          
BLAST of FC878125 vs. ExPASy Swiss-Prot
Match: WRK35_ARATH (Probable WRKY transcription factor 35 OS=Arabidopsis thaliana GN=WRKY35 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.680e-33
Identity = 66/97 (68.04%), Postives = 77/97 (79.38%), Query Frame = 3
Query:  558 KNQLKRVCHVPA----------EGLSSDVWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGST 818
            K+Q K+V  +PA          E + SD+WAWRKYGQKPIKGSPYPRGYYRCSSSKGC ARKQVER+R+DP M ++TYT+EHNHP PT RN+LAGST
Sbjct:  189 KSQAKKVVCIPAPAAMNSRSSGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGST 285          
BLAST of FC878125 vs. ExPASy Swiss-Prot
Match: WRK29_ARATH (Probable WRKY transcription factor 29 OS=Arabidopsis thaliana GN=WRKY29 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.964e-32
Identity = 67/88 (76.14%), Postives = 69/88 (78.41%), Query Frame = 3
Query:  558 KNQLKRVCH-VPAEGLSSDVWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGST 818
            KNQ KRV   V  E L SD WAWRKYGQKPIKGSPYPR YYRCSSSKGCLARKQVERN  +P  F +TYT EHNH  PT RNSLAGST
Sbjct:  117 KNQQKRVVEQVKEENLLSDAWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERNPQNPEKFTITYTNEHNHELPTRRNSLAGST 204          
BLAST of FC878125 vs. ExPASy Swiss-Prot
Match: WRK14_ARATH (Probable WRKY transcription factor 14 OS=Arabidopsis thaliana GN=WRKY14 PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 3.870e-32
Identity = 64/97 (65.98%), Postives = 76/97 (78.35%), Query Frame = 3
Query:  558 KNQLKRVCHVPA----------EGLSSDVWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGST 818
            K+Q K+V  +PA          E + SD+WAWRKYGQKPIKGSP+PRGYYRCSSSKGC ARKQVER+R+DP M ++TYT+EHNHP P  RN+LAGST
Sbjct:  191 KSQAKKVVCIPAPAAMNSRSSGEVVPSDLWAWRKYGQKPIKGSPFPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPIQRNALAGST 287          
BLAST of FC878125 vs. ExPASy Swiss-Prot
Match: WRK16_ARATH (Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.179e-30
Identity = 60/87 (68.97%), Postives = 70/87 (80.46%), Query Frame = 3
Query:  561 NQLKRV-CHVPAEGLSSDVWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGST 818
            N+ KRV C V     SSD+W WRKYGQKPIK SPYPR YYRC+SSKGC ARKQVER+R+DP + ++TY +EHNHP PT RN+LAGST
Sbjct: 1164 NKEKRVVCVVDRGSRSSDLWVWRKYGQKPIKSSPYPRSYYRCASSKGCFARKQVERSRTDPNVSVITYISEHNHPFPTLRNTLAGST 1250          
BLAST of FC878125 vs. ExPASy Swiss-Prot
Match: WRK65_ARATH (Probable WRKY transcription factor 65 OS=Arabidopsis thaliana GN=WRKY65 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.430e-26
Identity = 55/84 (65.48%), Postives = 63/84 (75.00%), Query Frame = 3
Query:  570 KRVCHVPAEGLS-----------SDVWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPGMFIVTYTAEHNHPAP 788
            KRV +VP + +            SD WAWRKYGQKPIKGSPYPRGYYRCSS+KGC ARKQVER+R DP M ++TYT+EHNHP P
Sbjct:   51 KRVVNVPMKEMEGSRHKGDTTPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSTKGCPARKQVERSRDDPTMILITYTSEHNHPWP 134          
BLAST of FC878125 vs. ExPASy Swiss-Prot
Match: WRK69_ARATH (Probable WRKY transcription factor 69 OS=Arabidopsis thaliana GN=WRKY69 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.583e-25
Identity = 58/106 (54.72%), Postives = 67/106 (63.21%), Query Frame = 3
Query:  558 KNQLKRVCHVPAEGLS-----------SDVWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPGMFIVTYTAEHNHPAPT--------HRNSLAGST 818
            +N  KRV  VP   +            SD WAWRKYGQKPIKGSPYPRGYYRCSSSKGC ARKQVER+R DP   ++TY  +HNHP P+        HR+S+   T
Sbjct:   43 RNVEKRVVSVPIADVEGSKSRGEVYPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPSKLMITYACDHNHPFPSSSANTKSHHRSSVVLKT 148          
BLAST of FC878125 vs. ExPASy Swiss-Prot
Match: WRK21_ARATH (Probable WRKY transcription factor 21 OS=Arabidopsis thaliana GN=WRKY21 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.742e-22
Identity = 49/80 (61.25%), Postives = 58/80 (72.50%), Query Frame = 3
Query:  558 KNQLKRVCHVPA-----EGLSSDVWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPGMFIVTYTAEHNHP 782
            K++++R   VPA       +  D ++WRKYGQKPIKGSPYPRGYY+CSS +GC ARK VER   DP M IVTY AEHNHP
Sbjct:  292 KHRVRRSIRVPAISNKVADIPPDDYSWRKYGQKPIKGSPYPRGYYKCSSMRGCPARKHVERCLEDPAMLIVTYEAEHNHP 371          
BLAST of FC878125 vs. ExPASy Swiss-Prot
Match: WRK11_ARATH (Probable WRKY transcription factor 11 OS=Arabidopsis thaliana GN=WRKY11 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 6.848e-21
Identity = 47/91 (51.65%), Postives = 60/91 (65.93%), Query Frame = 3
Query:  558 KNQLKRVCHVPA-----EGLSSDVWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGS 815
            KN++KR   VPA       +  D ++WRKYGQKPIKGSP+PRGYY+CS+ +GC ARK VER   DP M IVTY  EH H     + +++ S
Sbjct:  225 KNRMKRTVRVPAISAKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSTFRGCPARKHVERALDDPAMLIVTYEGEHRHNQSAMQENISSS 315          
The following BLAST results are available for this feature:
BLAST of FC878125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
WRK22_ARATH2.419e-4290.80WRKY transcription factor 22 OS=Arabidopsis thalia... [more]
WRK27_ARATH1.373e-3781.82Probable WRKY transcription factor 27 OS=Arabidops... [more]
WRK35_ARATH2.680e-3368.04Probable WRKY transcription factor 35 OS=Arabidops... [more]
WRK29_ARATH2.964e-3276.14Probable WRKY transcription factor 29 OS=Arabidops... [more]
WRK14_ARATH3.870e-3265.98Probable WRKY transcription factor 14 OS=Arabidops... [more]
WRK16_ARATH6.179e-3068.97Probable WRKY transcription factor 16 OS=Arabidops... [more]
WRK65_ARATH2.430e-2665.48Probable WRKY transcription factor 65 OS=Arabidops... [more]
WRK69_ARATH4.583e-2554.72Probable WRKY transcription factor 69 OS=Arabidops... [more]
WRK21_ARATH4.742e-2261.25Probable WRKY transcription factor 21 OS=Arabidops... [more]
WRK11_ARATH6.848e-2151.65Probable WRKY transcription factor 11 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA88DH08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA88DH08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878125 ID=FC878125; Name=FC878125; organism=Citrus clementina; type=EST; length=819bp
TCATAAGTCAGCGCCTTCTTTTGTCTCTGTCTCTTTCCCTTTTCCTTTCT
CTTAACAGAAGTACCAGACGAGAGGGTACAGATTCACAGCGCTTTTGTCT
CTTGAAGGCTAGCGAAGAGCCATGGAAGTTGACTGGGATCTGCATGCGGT
GGTCAGAGGCTGCAACAGCTCCGTTAACGCCACCGTTACAACAACTACAG
CCACCACCACAAGTACCACCACAAGTTTCAAGGATGATTTAGATACTACT
AATTCAATCTTGGTTTTCGGTTTCTCCATTTAGCCGTGAACAAACCAGTG
GTCATCTTTTCACCTTGGCCGATCCTTTCGAAGCAAGAAATGCTATTGAA
GAGCTGCATGAACTTTATAAGCCATTCTTTCCCAAATCTCCTCAGCCTAT
TTCTCCCAAAAGTAGTCAACCCATCTCGTCTTCTATTTCTTCTATCAATT
CATCATCATCAAAGGAACAGACTCAGTTCAAACAGCAGCAGCCTAATAAT
AAGCAGTCTCATGCTAGTTCTGTCACTAGTTCCACAACTCCTCGAACCAA
AAGAAGAAAGAATCAGCTCAAGAGAGTTTGTCATGTCCCAGCTGAAGGTC
TCTCTTCCGACGTTTGGGCTTGGAGAAAATATGGCCAAAAACCCATTAAA
GGCTCCCCCTATCCAAGGGGTTATTACAGATGTAGCAGTTCAAAGGGGTG
CTTGGCCCGGAAACAAGTGGAGCGAAACAGATCCGACCCCGGTATGTTCA
TAGTAACATATACGGCAGAGCACAACCACCCAGCTCCCACTCACAGAAAC
TCACTCGCCGGAAGCACCC
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