FC878127

Overview
NameFC878127
Unique NameFC878127
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length549
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4719 contig Ccv1_Contig4719:1..549. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878127 vs. ExPASy Swiss-Prot
Match: DERL3_BOVIN (Derlin-3 OS=Bos taurus GN=DERL3 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.107e-20
Identity = 46/121 (38.02%), Postives = 72/121 (59.50%), Query Frame = 1
Query:  193 FFEMPVCTRWWTTATVVTGVLVQCHIITPFQLFYSYRAVFHKSQYWRLLTTFIYFGPLSLNLLFHIFFIQRYARMLEESA--ASVAHFAWLMFYAATTLLTIAPISSQAFLGTTLSSTLVY 549
            F ++P  TR +T A V+T   VQ  +++PFQL+++   VF K Q WRL+T F++FGPL  +  F++ F+ RY RMLEE +     A F ++  +    +  +  + S  FLG  L++ LVY
Sbjct:   10 FLQVPAVTRTYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLITNFLFFGPLGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSLFFLGQALTAMLVY 130          
BLAST of FC878127 vs. ExPASy Swiss-Prot
Match: DERL3_MOUSE (Derlin-3 OS=Mus musculus GN=Derl3 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.595e-20
Identity = 47/121 (38.84%), Postives = 71/121 (58.68%), Query Frame = 1
Query:  193 FFEMPVCTRWWTTATVVTGVLVQCHIITPFQLFYSYRAVFHKSQYWRLLTTFIYFGPLSLNLLFHIFFIQRYARMLEESA--ASVAHFAWLMFYAATTLLTIAPISSQAFLGTTLSSTLVY 549
            F ++P  TR +T A V+T   VQ  +++PFQL+++   VF K Q WRL+TTF++FGPL     F++ F+ RY RMLEE +     A F ++  +    +  +  + S  FLG  L + LVY
Sbjct:   10 FLQVPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLITTFLFFGPLGFGFFFNMLFVFRYCRMLEEGSFRGRKADFVFMFLFGGVLMTLLGFLGSLFFLGQALMAMLVY 130          
BLAST of FC878127 vs. ExPASy Swiss-Prot
Match: DERL3_HUMAN (Derlin-3 OS=Homo sapiens GN=DERL3 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 6.132e-20
Identity = 46/121 (38.02%), Postives = 71/121 (58.68%), Query Frame = 1
Query:  193 FFEMPVCTRWWTTATVVTGVLVQCHIITPFQLFYSYRAVFHKSQYWRLLTTFIYFGPLSLNLLFHIFFIQRYARMLEESA--ASVAHFAWLMFYAATTLLTIAPISSQAFLGTTLSSTLVY 549
            F ++P  TR +T A V+T   VQ  +++PFQL+++   VF K Q WRL+T F++FGPL  +  F++ F+ RY RMLEE +     A F ++  +    +  +  + S  FLG  L + LVY
Sbjct:   10 FLQVPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLVTNFLFFGPLGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSLFFLGQALMAMLVY 130          
BLAST of FC878127 vs. ExPASy Swiss-Prot
Match: DERL2_PONAB (Derlin-2 OS=Pongo abelii GN=DERL2 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.779e-19
Identity = 45/121 (37.19%), Postives = 69/121 (57.02%), Query Frame = 1
Query:  193 FFEMPVCTRWWTTATVVTGVLVQCHIITPFQLFYSYRAVFHKSQYWRLLTTFIYFGPLSLNLLFHIFFIQRYARMLEESA--ASVAHFAWLMFYAATTLLTIAPISSQAFLGTTLSSTLVY 549
            + ++P  +R +TTA V+T   VQ  +ITPFQL+++   +F   Q WRL+T F++FGP+  N LF++ F+ RY RMLEE +     A F ++  +    +       S  FLG   +  LVY
Sbjct:   10 YLQIPPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLITNFLFFGPVGFNFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMTLFGLFVSLVFLGQAFTIMLVY 130          
BLAST of FC878127 vs. ExPASy Swiss-Prot
Match: DERL2_MOUSE (Derlin-2 OS=Mus musculus GN=Derl2 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 6.779e-19
Identity = 45/121 (37.19%), Postives = 69/121 (57.02%), Query Frame = 1
Query:  193 FFEMPVCTRWWTTATVVTGVLVQCHIITPFQLFYSYRAVFHKSQYWRLLTTFIYFGPLSLNLLFHIFFIQRYARMLEESA--ASVAHFAWLMFYAATTLLTIAPISSQAFLGTTLSSTLVY 549
            + ++P  +R +TTA V+T   VQ  +ITPFQL+++   +F   Q WRL+T F++FGP+  N LF++ F+ RY RMLEE +     A F ++  +    +       S  FLG   +  LVY
Sbjct:   10 YLQIPPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLITNFLFFGPVGFNFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMTLFGLFVSLVFLGQAFTIMLVY 130          
BLAST of FC878127 vs. ExPASy Swiss-Prot
Match: DERL2_HUMAN (Derlin-2 OS=Homo sapiens GN=DERL2 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.779e-19
Identity = 45/121 (37.19%), Postives = 69/121 (57.02%), Query Frame = 1
Query:  193 FFEMPVCTRWWTTATVVTGVLVQCHIITPFQLFYSYRAVFHKSQYWRLLTTFIYFGPLSLNLLFHIFFIQRYARMLEESA--ASVAHFAWLMFYAATTLLTIAPISSQAFLGTTLSSTLVY 549
            + ++P  +R +TTA V+T   VQ  +ITPFQL+++   +F   Q WRL+T F++FGP+  N LF++ F+ RY RMLEE +     A F ++  +    +       S  FLG   +  LVY
Sbjct:   10 YLQIPPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLITNFLFFGPVGFNFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMTLFGLFVSLVFLGQAFTIMLVY 130          
BLAST of FC878127 vs. ExPASy Swiss-Prot
Match: DER21_ARATH (Derlin-2.1 OS=Arabidopsis thaliana GN=DER2.1 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 4.394e-18
Identity = 48/135 (35.56%), Postives = 76/135 (56.30%), Query Frame = 1
Query:  184 EQWFFEMPVCTRWWTTATVVTGVLVQCHIITPFQLFYSYRAVFHKSQYWRLLTTFIYFGPLSLNLLFHIFFIQRYARMLEESA--ASVAHFAWLMFYAATTLLTIAPI-----------SSQAFLGTTLSSTLVY 549
            E+W+ +MP+ TR + TA VVT V     II+P+ L+ +   V  + Q+WRL+T F+YF  + L+ LFH+FF+ RY ++LEE++       F +++ + AT L  I  I           S   FL  +L+  +VY
Sbjct:    6 EEWYKQMPIITRSYLTAAVVTTVGCSLEIISPYNLYLNPTLVVKQYQFWRLVTNFLYFRKMDLDFLFHMFFLARYCKLLEENSFRGKTTDFLYMLLFGATVLTGIVLIGGMIPYLSVSFSKIIFLSNSLTFMMVY 140          
BLAST of FC878127 vs. ExPASy Swiss-Prot
Match: DER22_ARATH (Derlin-2.2 OS=Arabidopsis thaliana GN=DER2.2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.739e-18
Identity = 46/135 (34.07%), Postives = 77/135 (57.04%), Query Frame = 1
Query:  184 EQWFFEMPVCTRWWTTATVVTGVLVQCHIITPFQLFYSYRAVFHKSQYWRLLTTFIYFGPLSLNLLFHIFFIQRYARMLEESA--ASVAHFAWLMFYAATTLLTI-----------APISSQAFLGTTLSSTLVY 549
            E+W+ +MP+ TR + TA V+T V     II+P+ L+ +   V  + QYWRL+T F+YF  + L+ +FH+FF+ RY ++LEE++     A F +++ + A+ L  I           A  +   FL  +L+  +VY
Sbjct:    6 EEWYKQMPIITRSYLTAAVITTVGCSLDIISPYNLYLNPTLVVKQYQYWRLVTNFLYFRKMDLDFMFHMFFLARYCKLLEENSFRGKTADFLYMLLFGASVLTGIVLIGGMIPYLSASFAKIIFLSNSLTFMMVY 140          
BLAST of FC878127 vs. ExPASy Swiss-Prot
Match: DER21_MAIZE (Derlin-2.1 OS=Zea mays GN=DER2.1 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 7.495e-18
Identity = 47/135 (34.81%), Postives = 76/135 (56.30%), Query Frame = 1
Query:  184 EQWFFEMPVCTRWWTTATVVTGVLVQCHIITPFQLFYSYRAVFHKSQYWRLLTTFIYFGPLSLNLLFHIFFIQRYARMLEESA--ASVAHFAWLMFYAATTLLTIAPISSQ-----------AFLGTTLSSTLVY 549
            E+W+ +MP+ TR + TA VVT V     II+P+ L+ + + V    + WRL+T F+YF  + L+ LFH+FF+ RY ++LEE++     A F +++ + AT L +I  I               FL  +L+  +VY
Sbjct:    6 EEWYRQMPIITRSYLTAAVVTTVGCTLEIISPYHLYLNPKLVVQHYEIWRLVTNFLYFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTSIVLIGGMIPYISETFARILFLSNSLTFMMVY 140          
BLAST of FC878127 vs. ExPASy Swiss-Prot
Match: DERL2_ORYSJ (Derlin-2 OS=Oryza sativa subsp. japonica GN=DER2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.670e-17
Identity = 47/135 (34.81%), Postives = 75/135 (55.56%), Query Frame = 1
Query:  184 EQWFFEMPVCTRWWTTATVVTGVLVQCHIITPFQLFYSYRAVFHKSQYWRLLTTFIYFGPLSLNLLFHIFFIQRYARMLEESA--ASVAHFAWLMFYAATTLLTIAPISSQ-----------AFLGTTLSSTLVY 549
            E+W+ +MP+ TR + TA VVT V     II+P+ L+ + + V    + WRL+T F+YF  + L+ LFH+FF+ RY ++LEE++     A F +++ + AT L  I  I               FL  +L+  +VY
Sbjct:    6 EEWYRQMPIITRSYLTAAVVTTVGCTLEIISPYHLYLNPKLVVQHYEIWRLVTNFLYFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLIGGMIPYISETFARILFLSNSLTFMMVY 140          
The following BLAST results are available for this feature:
BLAST of FC878127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
DERL3_BOVIN2.107e-2038.02Derlin-3 OS=Bos taurus GN=DERL3 PE=2 SV=1[more]
DERL3_MOUSE3.595e-2038.84Derlin-3 OS=Mus musculus GN=Derl3 PE=2 SV=1[more]
DERL3_HUMAN6.132e-2038.02Derlin-3 OS=Homo sapiens GN=DERL3 PE=1 SV=2[more]
DERL2_PONAB6.779e-1937.19Derlin-2 OS=Pongo abelii GN=DERL2 PE=2 SV=1[more]
DERL2_MOUSE6.779e-1937.19Derlin-2 OS=Mus musculus GN=Derl2 PE=2 SV=2[more]
DERL2_HUMAN6.779e-1937.19Derlin-2 OS=Homo sapiens GN=DERL2 PE=1 SV=1[more]
DER21_ARATH4.394e-1835.56Derlin-2.1 OS=Arabidopsis thaliana GN=DER2.1 PE=2 ... [more]
DER22_ARATH5.739e-1834.07Derlin-2.2 OS=Arabidopsis thaliana GN=DER2.2 PE=2 ... [more]
DER21_MAIZE7.495e-1834.81Derlin-2.1 OS=Zea mays GN=DER2.1 PE=2 SV=2[more]
DERL2_ORYSJ1.670e-1734.81Derlin-2 OS=Oryza sativa subsp. japonica GN=DER2 P... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA3CA09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA3CA09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878127 ID=FC878127; Name=FC878127; organism=Citrus clementina; type=EST; length=549bp
AGCGAATCCAAGCAAACAACCGACTCGCTACCACATCACCTCTCTCGATA
CTGTGCACACTTGATGCAGCGACCATAATACAACAACACCTGCACCTTAC
TTCCGACGTTCCACGGCTAAGCGACAATCAACATGGCTGCAATGCTGGGC
GGCGGCGATGGACCACTGGGACAACTACCTCTAGAACAGTGGTTCTTCGA
GATGCCCGTGTGCACAAGATGGTGGACAACAGCGACGGTGGTCACGGGAG
TTCTGGTACAATGTCACATCATCACACCCTTCCAGCTGTTCTACAGCTAT
CGCGCGGTGTTCCACAAAAGCCAGTACTGGCGGCTGCTCACAACCTTCAT
ATACTTTGGACCACTGTCACTCAACCTGCTCTTCCACATATTCTTCATCC
AGCGCTATGCGCGAATGCTCGAGGAGTCTGCTGCAAGCGTGGCACACTTT
GCATGGCTGATGTTCTACGCCGCAACTACCCTCCTTACTATCGCGCCGAT
CTCAAGTCAGGCTTTCTTGGGCACCACCCTCAGCTCAACGCTCGTCTAC
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