FC878129

Overview
NameFC878129
Unique NameFC878129
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length791
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13022 contig Ccv1_Contig13022:372..1162. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878129 vs. ExPASy Swiss-Prot
Match: ENGA_CHLSY (GTP-binding protein engA OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=engA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.646e-17
Identity = 44/70 (62.86%), Postives = 49/70 (70.00%), Query Frame = 1
Query:  550 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIME 759
            P VAIVGRPNVGKS  FNRL+G  RAIV D PG TRDR+YG +FW   EF +VDT GVL      PN+ E
Sbjct:    4 PIVAIVGRPNVGKSTFFNRLIGERRAIVEDLPGTTRDRLYGDTFWNGREFTVVDTAGVL-FGGEDPNLPE 72          
BLAST of FC878129 vs. ExPASy Swiss-Prot
Match: ENGA_CHLAA (GTP-binding protein engA OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=engA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.646e-17
Identity = 44/70 (62.86%), Postives = 49/70 (70.00%), Query Frame = 1
Query:  550 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIME 759
            P VAIVGRPNVGKS  FNRL+G  RAIV D PG TRDR+YG +FW   EF +VDT GVL      PN+ E
Sbjct:    4 PIVAIVGRPNVGKSTFFNRLIGERRAIVEDLPGTTRDRLYGDTFWNGREFTVVDTAGVL-FGGEDPNLPE 72          
BLAST of FC878129 vs. ExPASy Swiss-Prot
Match: ENGA_CHLAD (GTP-binding protein engA OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=engA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.787e-16
Identity = 40/59 (67.80%), Postives = 45/59 (76.27%), Query Frame = 1
Query:  550 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVL 726
            P VAIVGRPNVGKS  FNRL+G  RAIV D PG TRDR+YG +FW   EF +VDT G+L
Sbjct:    4 PIVAIVGRPNVGKSTFFNRLIGERRAIVEDIPGTTRDRLYGDTFWNGREFTVVDTAGLL 62          
BLAST of FC878129 vs. ExPASy Swiss-Prot
Match: ENGA_BREBN (GTP-binding protein engA OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=engA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.166e-16
Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 1
Query:  547 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGV 723
            LP VAIVGRPNVGKS +FNRL+G   AIV D PGVTRDR+YG+  W  H F ++DTGG+
Sbjct:    3 LPVVAIVGRPNVGKSTIFNRLIGERVAIVEDMPGVTRDRLYGKGEWLTHTFHVIDTGGI 61          
BLAST of FC878129 vs. ExPASy Swiss-Prot
Match: ENGA_SYNPX (GTP-binding protein engA OS=Synechococcus sp. (strain WH8102) GN=engA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.393e-15
Identity = 43/76 (56.58%), Postives = 52/76 (68.42%), Query Frame = 1
Query:  550 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVL--NVSKSQPNIMEDLAI 771
            P VAI+GRPNVGKS L NRL     AIV DEPGVTRDR Y   +WG+ EF +VDTGG++  + S+  P I E  A+
Sbjct:    4 PVVAIIGRPNVGKSTLVNRLCRSREAIVHDEPGVTRDRTYQDGYWGDREFKVVDTGGLVFDDDSEFLPEIREQAAL 79          
BLAST of FC878129 vs. ExPASy Swiss-Prot
Match: ENGA_NOSP7 (GTP-binding protein engA OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=engA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.393e-15
Identity = 40/60 (66.67%), Postives = 46/60 (76.67%), Query Frame = 1
Query:  547 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVL 726
            LP VAI+GRPNVGKS L NRL G   AIV DEPGVTRDR Y  +FW   EF++VDTGG++
Sbjct:    3 LPIVAIIGRPNVGKSTLVNRLAGEQTAIVHDEPGVTRDRTYMPAFWNGREFLVVDTGGLV 62          
BLAST of FC878129 vs. ExPASy Swiss-Prot
Match: ENGA_HERA2 (GTP-binding protein engA OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=engA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.393e-15
Identity = 40/68 (58.82%), Postives = 47/68 (69.12%), Query Frame = 1
Query:  550 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNI 753
            P VAIVGRPNVGKS LFN+L+G  RAI+ DE G TRDR YG + W    F +VDT G+L V    PN+
Sbjct:    4 PIVAIVGRPNVGKSTLFNKLIGERRAIIADEAGTTRDRQYGETIWNGRVFTIVDTAGLL-VGDDDPNL 70          
BLAST of FC878129 vs. ExPASy Swiss-Prot
Match: ENGA_CYAP7 (GTP-binding protein engA OS=Cyanothece sp. (strain PCC 7424) GN=engA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.393e-15
Identity = 38/60 (63.33%), Postives = 47/60 (78.33%), Query Frame = 1
Query:  547 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVL 726
            LP VAI+GRPNVGKS L NRL G  +AIV DEPG+TRDR Y  +FW + +F +VDTGG++
Sbjct:    3 LPIVAIIGRPNVGKSTLVNRLAGDQQAIVHDEPGITRDRTYRPAFWQDRDFQVVDTGGLV 62          
BLAST of FC878129 vs. ExPASy Swiss-Prot
Match: ENGA_SYNP6 (GTP-binding protein engA OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=engA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.819e-15
Identity = 39/60 (65.00%), Postives = 46/60 (76.67%), Query Frame = 1
Query:  547 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVL 726
            LP VAI+GRPNVGKS L NRL G   AIV DEPGVTRDR Y  +FW + +F +VDTGG++
Sbjct:    3 LPIVAILGRPNVGKSTLVNRLAGSREAIVHDEPGVTRDRTYQEAFWCDRDFTVVDTGGLV 62          
BLAST of FC878129 vs. ExPASy Swiss-Prot
Match: ENGA_SYNE7 (GTP-binding protein engA OS=Synechococcus elongatus (strain PCC 7942) GN=engA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.819e-15
Identity = 39/60 (65.00%), Postives = 46/60 (76.67%), Query Frame = 1
Query:  547 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVL 726
            LP VAI+GRPNVGKS L NRL G   AIV DEPGVTRDR Y  +FW + +F +VDTGG++
Sbjct:    3 LPIVAILGRPNVGKSTLVNRLAGSREAIVHDEPGVTRDRTYQEAFWCDRDFTVVDTGGLV 62          
The following BLAST results are available for this feature:
BLAST of FC878129 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 478
Match NameE-valueIdentityDescription
ENGA_CHLSY9.646e-1762.86GTP-binding protein engA OS=Chloroflexus aurantiac... [more]
ENGA_CHLAA9.646e-1762.86GTP-binding protein engA OS=Chloroflexus aurantiac... [more]
ENGA_CHLAD4.787e-1667.80GTP-binding protein engA OS=Chloroflexus aggregans... [more]
ENGA_BREBN8.166e-1666.10GTP-binding protein engA OS=Brevibacillus brevis (... [more]
ENGA_SYNPX1.393e-1556.58GTP-binding protein engA OS=Synechococcus sp. (str... [more]
ENGA_NOSP71.393e-1566.67GTP-binding protein engA OS=Nostoc punctiforme (st... [more]
ENGA_HERA21.393e-1558.82GTP-binding protein engA OS=Herpetosiphon aurantia... [more]
ENGA_CYAP71.393e-1563.33GTP-binding protein engA OS=Cyanothece sp. (strain... [more]
ENGA_SYNP61.819e-1565.00GTP-binding protein engA OS=Synechococcus sp. (str... [more]
ENGA_SYNE71.819e-1565.00GTP-binding protein engA OS=Synechococcus elongatu... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA64AE06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA64AE06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878129 ID=FC878129; Name=FC878129; organism=Citrus clementina; type=EST; length=791bp
CCAAAAATCTTCAATTTCCATTTTCCATTTCCGTTTCTGAAAACACTCGC
AAAAACAAAAATGCCATCTGCAGCTGCAGCTCACACGCTTTCTTCTTCAA
TTTCTCTCATCTCTGCAATTCCGAAACTGCCCTTCTCGTCTTCCTTCTCC
TCTTCATTTCCAATCCTTCGCTCATTCTCTCCTCAATTACTCTCCCTTTC
TCTCCACAAACACTATCCTCTCCCTCTCCCTCTCACTCGCCACCTCCGGT
CTCTATCTCCCTCCAACGACGCCGTTTCGTCCTCAAACGACGACGCCTTC
GAAGATTCGCCGTTTGAGGACGAGGACGACGACGCCGAGTATGAAGACGT
CGATGATGAGTCTGACGGTCAGGATTTCGGCATTGACGTCGACGCGCTTG
AGCGAGAAGCCAAAGACGCTGTTCGCGAGTACTCTTCTTTGTTATCTCGC
CAACTAATAATACAAGATGAGACGGATGATCGAAAGGATTCTGGCAAAAA
GCAGAAAAAGCGTAAAACTACTATAGGAAATGTCCCTGAACATCTTCTGC
CAAGAGTTGCTATTGTTGGAAGGCCGAATGTTGGTAAATCAGCACTATTT
AACCGTCTTGTTGGGGGTAACAGGGCTATTGTGGTGGATGAACCTGGGGT
TACTAGGGATCGAATGTATGGCAGATCATTTTGGGGAGAGCATGAATTTA
TGCTGGTGGATACTGGTGGTGTGCTAAATGTTTCAAAGTCCCAGCCTAAT
ATTATGGAAGATTTGGCTATCACAACGACTATTGGAATGGA
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