FC878130

Overview
NameFC878130
Unique NameFC878130
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length809
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878130_ssr83 microsatellite FC878130_ssr83:83..100. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5823 contig Ccv1_Contig5823:17..825. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_PEA (Ornithine carbamoyltransferase, chloroplastic OS=Pisum sativum GN=ARGF PE=2 SV=1)

HSP 1 Score: 353.214 bits (905), Expect = 9.807e-97
Identity = 172/220 (78.18%), Postives = 194/220 (88.18%), Query Frame = 1
Query:  148 ASAALTFPVLRRSITCQASSATSAPNSIHGKPKAEQTDFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            +S++ + P   R I+CQASSA +A +++  K      DF+HI DFDK TI+KILDRA EVK LLKSGDR+F PF+GKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGP+DIQMGKREETRD ARVL RYNDIIMARVF HQDILDLAK+A+VPVINGLTDYNHP QIMADALT+IEH+GR EGTKVVYVGDGNN+VHSWLL+A+V+PFHFVCACPKGF
Sbjct:   37 SSSSSSSPSPLRRISCQASSAPAAESTLTAKVGNGLKDFIHIDDFDKETILKILDRAIEVKTLLKSGDRTFRPFEGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPNDIQMGKREETRDVARVLSRYNDIIMARVFSHQDILDLAKYASVPVINGLTDYNHPVQIMADALTMIEHIGRFEGTKVVYVGDGNNIVHSWLLLAAVVPFHFVCACPKGF 256          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_ARATH (Ornithine carbamoyltransferase, chloroplastic OS=Arabidopsis thaliana GN=OTC PE=1 SV=2)

HSP 1 Score: 340.887 bits (873), Expect = 5.037e-93
Identity = 169/232 (72.84%), Postives = 198/232 (85.34%), Query Frame = 1
Query:  127 SRFPATS----ASAALTFPVLRR-SITCQASSATSAPNSIHGKPKAEQTDFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            S FP T+    ++ +L  P L R  ++CQASS TS  +    K K++  DFL I DFD ATI  ILD+A+EVKALLKSG+R++LPFKGK+MSMIFAKPSMRTRVSFETGF LLGGHA+YLGP+DIQMGKREETRD ARVL RYNDIIMARVF HQDILDLA +++VPV+NGLTD+NHPCQIMADALT+IEH+G++EGTKVVYVGDGNN+VHSWL +ASVIPFHFVCACPKG+
Sbjct:   25 SFFPGTTLRRFSAVSLPSPALPRLRVSCQASSVTSPSSPSDVKGKSDLKDFLAIDDFDTATIKTILDKASEVKALLKSGERNYLPFKGKSMSMIFAKPSMRTRVSFETGFFLLGGHALYLGPNDIQMGKREETRDVARVLSRYNDIIMARVFAHQDILDLANYSSVPVVNGLTDHNHPCQIMADALTMIEHIGQVEGTKVVYVGDGNNMVHSWLELASVIPFHFVCACPKGY 256          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_ANOFW (Ornithine carbamoyltransferase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=argF PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.457e-47
Identity = 92/183 (50.27%), Postives = 125/183 (68.31%), Query Frame = 1
Query:  259 DFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            DFL ++D+ K  I  +L  A E+K   ++G+R + P  GKT++MIF KPS RTRVSFE G   LGGHA++L   D+Q+G+ E   D ARVL  Y D IM R F H+ + +LA +AT+PVINGLTD +HPCQ +AD LTI E  G+L+G K+ Y+GDGNN+ H+ +L A+ +  H   A PKG+
Sbjct:   13 DFLTLADYSKEEIEYLLHLAVELKEKQQNGER-YTPLSGKTLAMIFEKPSTRTRVSFEVGMVQLGGHALHLSSRDLQIGRGETIADTARVLSEYVDAIMIRTFEHEKVEELAHYATIPVINGLTDDDHPCQALADLLTIYEVKGKLQGLKLAYIGDGNNMAHALMLAAAKVGMHCAVASPKGY 194          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_CHLTE (Ornithine carbamoyltransferase OS=Chlorobium tepidum GN=argF PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.293e-45
Identity = 93/189 (49.21%), Postives = 128/189 (67.72%), Query Frame = 1
Query:  247 AEQTDFLHISDFDKATIMKILDRAAEVKALLKSGDRS--FLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            +++ DFL  +  D A I+++ D +  +K   ++   S  F P + KT++MIF KPS+RTRVSFE G   LGGHAI L    I +G+RE   D AR+L RYND I+AR+  H+ I  LAK A +PVIN LTD +HPCQ++ADA T+ E     +  KVV+VGDGNNV +SW+ +A ++PFHFV ACP+G+
Sbjct:   10 SKKRDFLGFTGLDAAKIIELFDYSLFIKQQRETNRNSDEFRPIRHKTVAMIFNKPSLRTRVSFELGVYELGGHAISLEGKSIGVGERESIEDIARLLSRYNDAIVARLHEHEIIETLAKHADIPVINALTDLSHPCQVLADAFTLYEKGLWRDDIKVVFVGDGNNVANSWIELAGILPFHFVLACPEGY 198          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_PYRFU (Ornithine carbamoyltransferase OS=Pyrococcus furiosus GN=argF PE=1 SV=6)

HSP 1 Score: 181.03 bits (458), Expect = 6.670e-45
Identity = 94/183 (51.37%), Postives = 122/183 (66.67%), Query Frame = 1
Query:  259 DFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            D L + D+    I  IL+ A   K   K G    L  +GKT++MIF KPS RTRVSFE   + LGGHA+YL   D+Q+ + E   D ARVL RY D IMARV+ H+D+ DLAK+ATVPVINGL+D++HPCQ +AD +TI E  G ++G KVVYVGDGNNV HS ++  + +    V A P+G+
Sbjct:    9 DLLCLQDYTAEEIWTILETAKMFKIWQKIGKPHRL-LEGKTLAMIFQKPSTRTRVSFEVAMAHLGGHALYLNAQDLQLRRGETIADTARVLSRYVDAIMARVYDHKDVEDLAKYATVPVINGLSDFSHPCQALADYMTIWEKKGTIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGY 190          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_PYRAB (Ornithine carbamoyltransferase OS=Pyrococcus abyssi GN=argF PE=3 SV=4)

HSP 1 Score: 180.259 bits (456), Expect = 1.138e-44
Identity = 93/183 (50.82%), Postives = 123/183 (67.21%), Query Frame = 1
Query:  259 DFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            D L + D+    I  IL+ A  +K   K G    L  +GKT++MIF KPS RTRVSFE   + LGGHA+YL   D+Q+ + E   D ARVL RY D IMARV+ H+D+ DLAK+A+VPVINGL+D++HPCQ +AD +TI E  G ++G KVVYVGDGNNV HS ++  + +    V A P+G+
Sbjct:    9 DLLCLQDYTPEEIWTILETAKMLKIWQKIGKPHRL-LEGKTLAMIFQKPSTRTRVSFEVAMAHLGGHALYLNAQDLQLRRGETIADTARVLSRYVDAIMARVYDHKDVEDLAKYASVPVINGLSDFSHPCQALADYMTIWEKKGTIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGY 190          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_PYRKO (Ornithine carbamoyltransferase OS=Pyrococcus kodakaraensis GN=argF PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.941e-44
Identity = 91/183 (49.73%), Postives = 124/183 (67.76%), Query Frame = 1
Query:  259 DFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            D L + DF +  +  IL  A  +K   K G +     +GKT++MIF KPS RTR+SFE G   LGG+ +YL   D+Q+ + E   D ARVL RY D IMARVF H+D+ DLAK+A+VPVINGL+D++HPCQ +AD  TI+E  GR++G K+VYVGDGNNV HS ++  + +  + V A P+G+
Sbjct:    9 DVLCLQDFTREELETILKTAEMMKIWNKIG-KPHRVLEGKTLAMIFQKPSTRTRISFEVGIYQLGGYGLYLNAQDLQLRRGETIADTARVLSRYVDGIMARVFDHKDVEDLAKYASVPVINGLSDFSHPCQALADYQTILEKKGRIQGLKIVYVGDGNNVAHSLMIAGTKLGANVVVATPEGY 190          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_PYRHO (Ornithine carbamoyltransferase OS=Pyrococcus horikoshii GN=argF PE=3 SV=3)

HSP 1 Score: 179.489 bits (454), Expect = 1.941e-44
Identity = 93/183 (50.82%), Postives = 122/183 (66.67%), Query Frame = 1
Query:  259 DFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            D L + D+    I  IL+ A   K   K G    L  +GKT++MIF KPS RTRVSFE   + LGGHA+YL   D+Q+ + E   D ARVL RY D IMARV+ H+D+ DLAK+A+VPVINGL+D++HPCQ +AD +TI E  G ++G KVVYVGDGNNV HS ++  + +    V A P+G+
Sbjct:    9 DLLCLQDYTPEEIWTILETAKMFKIWQKIGKPHRL-LEGKTLAMIFQKPSTRTRVSFEVAMAHLGGHALYLNAQDLQLRRGETIADTARVLSRYVDAIMARVYAHKDVEDLAKYASVPVINGLSDFSHPCQALADYMTIWEKKGTIKGVKVVYVGDGNNVCHSLMIAGTKLGADVVVATPEGY 190          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_HALWD (Ornithine carbamoyltransferase OS=Haloquadratum walsbyi (strain DSM 16790) GN=arcB PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.311e-44
Identity = 91/186 (48.92%), Postives = 121/186 (65.05%), Query Frame = 1
Query:  250 EQTDFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            + ++FL I D     +  ILDRA    AL   GD +  P  G+T+ M+F KPS RTR+SFETG + LGGHAI+LGPDDIQ+G  E   D ARVL  Y D++MAR+F H D+L++A  A +PVINGLTD  HPCQ +AD LTI E  G  +   VV++GDGNNV  S+++ A+++        P G+
Sbjct:    3 KSSNFLDIDDLTTDELQTILDRAT---ALKHGGDNAQFP--GQTLGMLFEKPSTRTRISFETGMTQLGGHAIFLGPDDIQLGHGEPLSDTARVLSGYVDVVMARLFNHDDLLEIAAHADIPVINGLTDDAHPCQTLADLLTIKEEFGGFDDVTVVWIGDGNNVGQSFVIGAAMVGLDLTVVTPSGY 183          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_PELPD (Ornithine carbamoyltransferase OS=Pelobacter propionicus (strain DSM 2379) GN=argF PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.643e-43
Identity = 88/182 (48.35%), Postives = 118/182 (64.84%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            FL + D+ K  + ++L  A E+K   K G    L  KGKT++MIF K S RTR+SFE G   LGGH +++     QMG+ E  +D ARVL RY D IM R FG + + +LA +ATVPVINGLTD  HPCQIMAD +T++EH G   G K  +VGDGNN+ ++W+  A++  F    ACP+G+
Sbjct:    5 FLSLHDYTKEELDRLLALAIELKQEQKQGGEHHL-LKGKTLAMIFDKSSTRTRISFEVGIYQLGGHGLFISTGTSQMGRGEPLKDTARVLSRYCDGIMIRTFGQEIVDELAAYATVPVINGLTDLFHPCQIMADVMTVMEHKGGYAGLKFAWVGDGNNMANTWIEAAAIFGFDLALACPQGY 185          
The following BLAST results are available for this feature:
BLAST of FC878130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
OTC_PEA9.807e-9778.18Ornithine carbamoyltransferase, chloroplastic OS=P... [more]
OTC_ARATH5.037e-9372.84Ornithine carbamoyltransferase, chloroplastic OS=A... [more]
OTC_ANOFW5.457e-4750.27Ornithine carbamoyltransferase OS=Anoxybacillus fl... [more]
OTC_CHLTE2.293e-4549.21Ornithine carbamoyltransferase OS=Chlorobium tepid... [more]
OTC_PYRFU6.670e-4551.37Ornithine carbamoyltransferase OS=Pyrococcus furio... [more]
OTC_PYRAB1.138e-4450.82Ornithine carbamoyltransferase OS=Pyrococcus abyss... [more]
OTC_PYRKO1.941e-4449.73Ornithine carbamoyltransferase OS=Pyrococcus kodak... [more]
OTC_PYRHO1.941e-4450.82Ornithine carbamoyltransferase OS=Pyrococcus horik... [more]
OTC_HALWD3.311e-4448.92Ornithine carbamoyltransferase OS=Haloquadratum wa... [more]
OTC_PELPD1.643e-4348.35Ornithine carbamoyltransferase OS=Pelobacter propi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YE24RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YE24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878130 ID=FC878130; Name=FC878130; organism=Citrus clementina; type=EST; length=809bp
GCTTGTTACCAGTTCCCACCAAAATCAATGGCGGCGATTTCAAGTTGCTG
TACATATCGATCGGGCAAAATGCCTCTATCCGCTTCTTCTTCTTCTTCTT
TCTCCGGAAAGTTTCTCCCGAAACAATCGCGATTTCCTGCCACGTCGGCG
TCTGCTGCCCTGACATTTCCGGTCCTCCGAAGAAGCATCACGTGCCAGGC
ATCCTCGGCCACGTCAGCTCCTAATTCCATCCACGGCAAACCAAAAGCAG
AGCAGACGGATTTTCTGCACATCAGCGATTTTGACAAAGCTACCATAATG
AAGATTTTAGACCGAGCTGCTGAGGTCAAGGCACTACTTAAGTCAGGGGA
TAGGTCATTTTTGCCGTTTAAAGGGAAGACAATGTCTATGATCTTTGCAA
AGCCATCCATGAGAACTCGGGTTTCATTTGAAACAGGGTTTTCCTTGTTG
GGAGGCCATGCTATATACTTAGGACCTGATGATATCCAGATGGGAAAGAG
AGAGGAAACACGTGACGCTGCTCGTGTTCTATGTCGCTACAATGATATTA
TTATGGCACGTGTTTTTGGTCATCAGGACATTCTTGATCTCGCTAAATTT
GCAACTGTACCAGTTATCAATGGCTTGACAGACTACAACCATCCTTGCCA
AATAATGGCTGATGCCCTCACCATTATTGAACACGTTGGTCGTCTGGAAG
GAACCAAGGTTGTCTATGTTGGAGATGGAAATAACGTAGTGCACTCTTGG
CTTTTGATGGCATCAGTTATTCCTTTCCACTTTGTTTGTGCCTGCCCCAA
AGGTTTTGA
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