FC878134

Overview
NameFC878134
Unique NameFC878134
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10497 contig Ccv1_Contig10497:1..691. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878134 vs. ExPASy Swiss-Prot
Match: GRWD1_DICDI (Glutamate-rich WD repeat-containing protein 1 OS=Dictyostelium discoideum GN=grwd1 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.186e-17
Identity = 51/111 (45.95%), Postives = 65/111 (58.56%), Query Frame = -2
Query:  346 DSVVAHFEYHKHPVTSIEWGPHEGSTLAVSSADNQLTIWDLFLEKDGEGGAEFKVKTREQVNAPED--XXXXXXXXXQGQKDLKEFHWPAQIPGMIVFTPADGFNILMPSN 672
            +S V+ F+YH  P+TSIEW P+E S + VSS+D+Q+TIWD  LE+D E   EF   T    N  +D           QGQ D+KE HW  QIP + + T  DGFNI   SN
Sbjct:  375 NSPVSDFKYHTGPITSIEWNPYEESQVIVSSSDDQVTIWDFSLEEDTE---EF---TNANANPDDDFQYPPQLFFIHQGQHDIKEVHWHPQIPHVAISTSIDGFNIFKSSN 479          
BLAST of FC878134 vs. ExPASy Swiss-Prot
Match: RRB1_SCHPO (Ribosome assembly protein rrb1 OS=Schizosaccharomyces pombe GN=rrb1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.198e-15
Identity = 44/113 (38.94%), Postives = 60/113 (53.10%), Query Frame = -2
Query:  361 RLLKGGDSV---VAHFEYHKHPVTSIEWGPHEGSTLAVSSADNQLTIWDLFLEKDGEGGAEFKVKTREQVNAPEDXXXXXXXXXQGQKDLKEFHWPAQIPGMIVFTPADGFNI 690
            R LK   SV   VA F++H+ P+ SIEW P+E S + V  ADNQ+++WDL +E D E       +        +D          GQ+++KE HW  QIPG IV T   G N+
Sbjct:  368 RSLKSSSSVATPVASFKWHRAPIYSIEWHPNEDSVIGVVGADNQISLWDLSVELDEE------EQDSRAAEGLQDVPPQLMFIHMGQQEIKEMHWHRQIPGTIVSTAMTGINV 474          
BLAST of FC878134 vs. ExPASy Swiss-Prot
Match: GRWD1_BOVIN (Glutamate-rich WD repeat-containing protein 1 OS=Bos taurus GN=GRWD1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.228e-14
Identity = 46/110 (41.82%), Postives = 56/110 (50.91%), Query Frame = -2
Query:  361 RLLKGGDSVVAHFEYHKHPVTSIEWGPHEGSTLAVSSADNQLTIWDLFLEKDGEGGAEFKVKTREQVNAPEDXXXXXXXXXQGQKDLKEFHWPAQIPGMIVFTPADGFNI 690
            R  K G S VA F+ H  PVTS+EW P +    A S ADNQ+T WDL +E+D E G        E      D         QG+ DLKE HW  Q PG++V T   GF +
Sbjct:  338 RQFKSG-SPVATFKQHVAPVTSVEWHPQDSGVFAASGADNQITQWDLAVERDPEAG------DAETDPGLADLPQQLLFVHQGETDLKELHWHPQCPGVLVSTALSGFTV 440          
BLAST of FC878134 vs. ExPASy Swiss-Prot
Match: GRWD1_RAT (Glutamate-rich WD repeat-containing protein 1 OS=Rattus norvegicus GN=Grwd1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.093e-14
Identity = 45/110 (40.91%), Postives = 59/110 (53.64%), Query Frame = -2
Query:  361 RLLKGGDSVVAHFEYHKHPVTSIEWGPHEGSTLAVSSADNQLTIWDLFLEKDGEGGAEFKVKTREQVNAPEDXXXXXXXXXQGQKDLKEFHWPAQIPGMIVFTPADGFNI 690
            R  K G S VA F+ H  PVTS+EW P +    A S ADNQ+T WDL +E+D E G   + +T   + A            QG+ DLKE HW  Q PG+++ T   GF +
Sbjct:  337 RQFKSG-SPVATFKQHVAPVTSVEWHPQDSGVFAASGADNQITQWDLAVERDPESG---ETETDPGLAA---LPQQLLFVHQGETDLKELHWHPQCPGVLISTALSGFTV 439          
BLAST of FC878134 vs. ExPASy Swiss-Prot
Match: GRWD1_MOUSE (Glutamate-rich WD repeat-containing protein 1 OS=Mus musculus GN=Grwd1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.958e-14
Identity = 45/110 (40.91%), Postives = 59/110 (53.64%), Query Frame = -2
Query:  361 RLLKGGDSVVAHFEYHKHPVTSIEWGPHEGSTLAVSSADNQLTIWDLFLEKDGEGGAEFKVKTREQVNAPEDXXXXXXXXXQGQKDLKEFHWPAQIPGMIVFTPADGFNI 690
            R  K G S VA F+ H  PVTS+EW P +    A S ADNQ+T WDL +E+D E G   + +T   + A            QG+ DLKE HW  Q PG+++ T   GF +
Sbjct:  338 RQFKSG-SPVATFKQHMAPVTSVEWHPQDSGVFAASGADNQITQWDLAVERDPEPG---ETETDPGLAA---LPQQLLFVHQGETDLKELHWHPQCPGVLISTALSGFTV 440          
BLAST of FC878134 vs. ExPASy Swiss-Prot
Match: GRWD1_HUMAN (Glutamate-rich WD repeat-containing protein 1 OS=Homo sapiens GN=GRWD1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.357e-13
Identity = 45/110 (40.91%), Postives = 56/110 (50.91%), Query Frame = -2
Query:  361 RLLKGGDSVVAHFEYHKHPVTSIEWGPHEGSTLAVSSADNQLTIWDLFLEKDGEGGAEFKVKTREQVNAPEDXXXXXXXXXQGQKDLKEFHWPAQIPGMIVFTPADGFNI 690
            R  K G S VA F+ H  PVTS+EW P +    A S AD+Q+T WDL +E+D E G        E      D         QG+ +LKE HW  Q PG++V T   GF I
Sbjct:  338 RQFKSG-SPVATFKQHVAPVTSVEWHPQDSGVFAASGADHQITQWDLAVERDPEAG------DVEADPGLADLPQQLLFVHQGETELKELHWHPQCPGLLVSTALSGFTI 440          
BLAST of FC878134 vs. ExPASy Swiss-Prot
Match: RRB1_YEAST (Ribosome assembly protein RRB1 OS=Saccharomyces cerevisiae GN=RRB1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.448e-12
Identity = 37/101 (36.63%), Postives = 55/101 (54.46%), Query Frame = -2
Query:  361 VAHFEYHKHPVTSIEWGPHEGSTLAVSSADNQLTIWDLFLEKDGEGGAEFKVKTREQVNAPEDXXXXXXXXXQGQKDLKEFHWPAQIPGMIVFTPADGFNI 663
            VA +++HK  +TSI + P + S +AV S DN +T+WDL +E D E   +   +T+E    P             QK++K+  W  QIPG +V T  DG N+
Sbjct:  410 VAQYDFHKGAITSIAFNPLDESIVAVGSEDNTVTLWDLSVEADDEEIKQQAAETKELQEIPPQLLFVHW-----QKEVKDVKWHKQIPGCLVSTGTDGLNV 505          
The following BLAST results are available for this feature:
BLAST of FC878134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
GRWD1_DICDI1.186e-1745.95Glutamate-rich WD repeat-containing protein 1 OS=D... [more]
RRB1_SCHPO7.198e-1538.94Ribosome assembly protein rrb1 OS=Schizosaccharomy... [more]
GRWD1_BOVIN1.228e-1441.82Glutamate-rich WD repeat-containing protein 1 OS=B... [more]
GRWD1_RAT6.093e-1440.91Glutamate-rich WD repeat-containing protein 1 OS=R... [more]
GRWD1_MOUSE7.958e-1440.91Glutamate-rich WD repeat-containing protein 1 OS=M... [more]
GRWD1_HUMAN1.357e-1340.91Glutamate-rich WD repeat-containing protein 1 OS=H... [more]
RRB1_YEAST7.448e-1236.63Ribosome assembly protein RRB1 OS=Saccharomyces ce... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA64AE08FM1 IVIA1 Citrus clementina cDNA clone IC0AAA64AE08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878134 ID=FC878134; Name=FC878134; organism=Citrus clementina; type=EST; length=691bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TAAAAAAAAACAAACCCAAAAATCTGCTTTGATTCTAAGGCAAAAACCGA
AGAACAAATGACCATAAAATCCTTCACTACATTATTTGCCCAATCAGGTT
GCTAATTTTTGCATAAAACTCAACCATAAAAAACTCAAAATAAACTTGGG
AAACACAAAAAAAAAAACTTATCCCTTGCTTCAAACTCAAAAAACTTGCA
AAATTTACCTATGTACGATGCTGAAACAGGGGCATTAGGGCAAAATTGAC
TAGGATCTTCTCTTAAACGGCATCCGGGGGCAGGGTATTTTGAAGGTTTG
AGGGCATTAATATGTTAAAGCCGTCGGCGGGGGTAAACACAATCATTCCG
GGAATCTGAGCAGGCCAATGAAATTCTTTCAAGTCTTTCTGTCCCTGAAG
AAAAAATAAAAGTTGAGGGGGTAAATCTTCGGGGGCATTTACTTGCTCTC
TTGTCTTAACTTTGAACTCCGCCCCCCCTTCCCCATCTTTTTCCAAAAAA
AGGTCCCATATCGTTAGCTGATTATCAGCTGAAGAAACTGCCAAAGTTGA
CCCTTCATGCGGACCCCACTCGATGGATGTAACAGGATGCTTATGGTACT
CAAAATGCGCTACTACCGAATCCCCCCCCTTGAGCAATCTA
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