FC878138

Overview
NameFC878138
Unique NameFC878138
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length908
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878138_ssr863 microsatellite FC878138_ssr863:863..877. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13521 contig Ccv1_Contig13521:7..914. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878138 vs. ExPASy Swiss-Prot
Match: 7SB1_SOYBN (Basic 7S globulin OS=Glycine max GN=BG PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 8.341e-26
Identity = 94/294 (31.97%), Postives = 136/294 (46.26%), Query Frame = 2
Query:   50 SPSSQFLLFLCFIFLVNGSVNSIAIPVVKDASTLQYVAKIHHGVSQVPINLVLDLGGPLTWVDCDXXXXXXXXXXXXXXXXXXIQCSRSGK----SPVPGNGSDTTTNTCGVFTQNGISGLATTGDLAEDTIAVR----SELEDPSITAVDEFLFSCAPTFLVQ-GLASGVRGMLGLGRAPISLPSQLATGIGHQRKFFMCLS---SSNGVVL---------SHHTSTTKLPLMYTPL-IGKSQDYFINVKSIKING------NPLSVTIEGLTK----LSTIVPYATMESSIY 835
            S S  FL FL         +N + +PV  D ST  + A +      + + +++DL G   WV+C+                   QCSR+      S    +      NTCG+ + N I+     G+L ED +A+     S  +   +  V +FLFSCAP+FLVQ GL    +G+ GLG APISLP+QLA+  G QR+F  CLS   +S G ++                   L +TPL I    +Y + V SI+IN       N +S TI G T     +ST  P+  ++ S+Y
Sbjct:   12 SLSCSFLFFLSDSVTPTKPINLVVLPVQNDGSTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYSSKTYQAPFCHST---QCSRANTHQCLSCPAASRPGCHKNTCGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGHAPISLPNQLASHFGLQRQFTTCLSRYPTSKGAIIFGDAPNNMRQFQNQDIFHDLAFTPLTITLQGEYNVRVNSIRINQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVY 302          
BLAST of FC878138 vs. ExPASy Swiss-Prot
Match: 7SBG2_SOYBN (Basic 7S globulin 2 OS=Glycine max PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.204e-24
Identity = 87/274 (31.75%), Postives = 132/274 (48.18%), Query Frame = 2
Query:  107 VNSIAIPVVKDASTLQYVAKIHHGVSQVPINLVLDLGGPLTWVDCDXXXXXXXXXXXXXXXXXXIQCSRSGK----SPVPGNGSDTTTNTCGVFTQNGISGLATTGDLAEDTIAVR----SELEDPSITAVDEFLFSCAPTFLVQ-GLASGVRGMLGLGRAPISLPSQLATGIGHQRKFFMCLS---SSNGVVL---------SHHTSTTKLPLMYTPLIGKSQ-DYFINVKSIKIN------GNPLSVTI---EGLTKLSTIVPYATMESSIY 835
            +N + +PV  DAST  + A +      + + +++DL G   WV+C+                   QCSR+      S    +      NTCG+ + N I+     G+L +D +A+     S  +   +  V +FLFSCAP+FL+Q GL   ++G+ GLG APISLP+QLA+  G Q +F  CLS   +S G ++           H       L +TPL    Q +Y + V SI+IN       N +S TI    G T +ST  P+  ++ S+Y
Sbjct:   38 INLLVLPVQNDASTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQHYSSKTYQAPFCHST---QCSRANTHQCLSCPAASRPGCHKNTCGLMSTNPITQQTGLGELGQDVLAIHATQGSTQQLGPLVTVPQFLFSCAPSFLLQKGLPRNIQGVAGLGHAPISLPNQLASHFGLQHQFTTCLSRYPTSKGALIFGDAPNNMQQFHNQDIFHDLAFTPLTVTPQGEYNVRVSSIRINQHSVFPPNKISSTIVGSSGGTMISTSTPHMVLQQSLY 308          
The following BLAST results are available for this feature:
BLAST of FC878138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
7SB1_SOYBN8.341e-2631.97Basic 7S globulin OS=Glycine max GN=BG PE=1 SV=2[more]
7SBG2_SOYBN1.204e-2431.75Basic 7S globulin 2 OS=Glycine max PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionIC0AAA3CA10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA3CA10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878138 ID=FC878138; Name=FC878138; organism=Citrus clementina; type=EST; length=908bp
CCTCAGTCCTCTCTCTTTCTGTCTCTGCGCTGCTTTTACTTCCATGGCTT
CCCCTTCTTCTCAATTCCTTCTCTTTCTTTGCTTCATTTTTCTTGTCAAC
GGAAGTGTTAATTCTATTGCCATCCCGGTCGTCAAAGATGCTTCAACTTT
GCAATACGTTGCCAAGATTCATCACGGCGTTTCGCAAGTTCCCATCAACC
TTGTTCTTGATCTCGGCGGTCCGTTGACCTGGGTCGATTGTGATTCTTCT
GCCGACGTGTCGTCGTCATCATCCCGTCGGTTGATTCCAAGTCAGTCAAT
CCAGTGCTCAAGATCTGGAAAATCCCCTGTTCCTGGGAATGGTAGCGACA
CAACTACTAATACATGCGGTGTCTTCACACAAAATGGCATCTCAGGATTG
GCCACTACAGGGGATTTGGCGGAAGACACCATAGCCGTTCGATCAGAACT
AGAGGACCCATCAATCACAGCCGTTGATGAGTTCCTCTTCTCTTGTGCGC
CAACTTTTCTCGTCCAAGGCCTTGCAAGCGGTGTCAGAGGAATGCTGGGC
CTGGGAAGGGCTCCAATTTCGTTACCGTCACAGCTCGCCACCGGAATCGG
CCATCAAAGAAAGTTCTTTATGTGTCTCTCATCTTCAAACGGTGTCGTAT
TGTCTCACCATACAAGCACGACAAAGTTGCCACTGATGTACACACCTCTT
ATTGGTAAGTCTCAAGATTACTTCATTAATGTCAAATCCATCAAAATAAA
TGGCAACCCATTATCGGTTACTATCGAAGGATTGACAAAATTGAGCACAA
TTGTTCCTTACGCGACTATGGAGAGCTCAATTTATGCCACATTTGCCAAA
GCTTTCACGAAGGCTGCTGCTGCTGCTTCTAGGGACATGAACGTGGTGGC
TCCCGTGG
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