FC878139

Overview
NameFC878139
Unique NameFC878139
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length801
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10750 contig Ccv1_Contig10750:704..1504. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC878139 vs. ExPASy Swiss-Prot
Match: XYLT2_PANTR (Xylosyltransferase 2 OS=Pan troglodytes GN=XYLT2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.731e-11
Identity = 49/148 (33.11%), Postives = 79/148 (53.38%), Query Frame = -3 
Query:  353 WDWFINLSASDYPLMSQDDILHIFSYLPKYLNFLEHTSSIGWKEYQRARPIIIDPGLYHPKKFGVFWAKEKRSMPASFKLFMGSAWVVLTRSFLEFCIWGWDNLPRTLLMYYTNFLSSPEGYFHSVICNHKDYQNTTVNHDLHYIRWD 796
            WD+FINLSA+DYP  + ++++   S   +  NFL+   S G    +  +   +D  L+H     + W   +R +PA   +  GS W VLTRSF+E+ ++  D L   L  +YT  L   E +FH+V+ N    + T V+++L    W+
Sbjct:  322 WDFFINLSATDYPTRTNEELVAFLSK-NRDKNFLK---SHGRDNSRFIKKQGLDR-LFHECDSHM-WRLGERQIPAGIVVDGGSDWFVLTRSFVEYVVYTDDPLVAQLRQFYTYTLLPAESFFHTVLENSLACE-TLVDNNLRVTNWN 462
[Close]
BLAST of FC878139 vs. ExPASy Swiss-Prot
Match: XYLT2_HUMAN (Xylosyltransferase 2 OS=Homo sapiens GN=XYLT2 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.731e-11
Identity = 49/148 (33.11%), Postives = 79/148 (53.38%), Query Frame = -3 
Query:  353 WDWFINLSASDYPLMSQDDILHIFSYLPKYLNFLEHTSSIGWKEYQRARPIIIDPGLYHPKKFGVFWAKEKRSMPASFKLFMGSAWVVLTRSFLEFCIWGWDNLPRTLLMYYTNFLSSPEGYFHSVICNHKDYQNTTVNHDLHYIRWD 796
            WD+FINLSA+DYP  + ++++   S   +  NFL+   S G    +  +   +D  L+H     + W   +R +PA   +  GS W VLTRSF+E+ ++  D L   L  +YT  L   E +FH+V+ N    + T V+++L    W+
Sbjct:  322 WDFFINLSATDYPTRTNEELVAFLSK-NRDKNFLK---SHGRDNSRFIKKQGLDR-LFHECDSHM-WRLGERQIPAGIVVDGGSDWFVLTRSFVEYVVYTDDPLVAQLRQFYTYTLLPAESFFHTVLENSLACE-TLVDNNLRVTNWN 462
[Close]
BLAST of FC878139 vs. ExPASy Swiss-Prot
Match: XYLT2_RAT (Xylosyltransferase 2 OS=Rattus norvegicus GN=Xylt2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.070e-11
Identity = 48/148 (32.43%), Postives = 79/148 (53.38%), Query Frame = -3 
Query:  353 WDWFINLSASDYPLMSQDDILHIFSYLPKYLNFLEHTSSIGWKEYQRARPIIIDPGLYHPKKFGVFWAKEKRSMPASFKLFMGSAWVVLTRSFLEFCIWGWDNLPRTLLMYYTNFLSSPEGYFHSVICNHKDYQNTTVNHDLHYIRWD 796
            WD+FINLSA+DYP  + ++++   S   +  NFL+   S G    +  +   +D  L+H     + W   +R +PA   +  GS W VLTRSF+E+ ++  D L   L  +YT  L   E +FH+V+ N    + + V+++L    W+
Sbjct:  322 WDFFINLSATDYPTRTNEELVAFLSK-NRDKNFLK---SHGRDNSRFIKKQGLDR-LFHECDSHM-WRLGERQIPAGIVVDGGSDWFVLTRSFVEYVVYTEDPLVAQLRQFYTYTLLPAESFFHTVLENSPACE-SLVDNNLRVTNWN 462
The following BLAST results are available for this feature:
BLAST of FC878139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
XYLT2_PANTR4.731e-1133.11Xylosyltransferase 2 OS=Pan troglodytes GN=XYLT2 P... [more]
XYLT2_HUMAN4.731e-1133.11Xylosyltransferase 2 OS=Homo sapiens GN=XYLT2 PE=2... [more]
XYLT2_RAT8.070e-1132.43Xylosyltransferase 2 OS=Rattus norvegicus GN=Xylt2... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA64AE09FM1 IVIA1 Citrus clementina cDNA clone IC0AAA64AE09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878139 ID=FC878139; Name=FC878139; organism=Citrus clementina; type=EST; length=801bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTACAAAACTATTTACACTGTTTT
GACCTAAAAATTTCTGGATCAAGAAGTTTAACGATTAGTTTCTCTAACGT
CTTAAAATTTACACTTGGTTTAATAGCATAAGGATTTCCATAAACTAAAC
AAGGGTCTTTACCAAAAGCAAAGTTGCCAACACACCACCCTCCGGGAGTA
AACCGGTTATTTGATCTCTTCAAGAGCTTCTCATCAATTTTGTTCAAAAC
CGGATCATCCTTGGCAAACTTACGAGCAAAAGGGGCACCACTTTGAACCA
TGCCATCAAAATGTTTCAATGTTAAAGTCATTGGATGCTGCTTCGGAGGG
CTATCCCACCTTATATAATGCAAGTCGTGGTTTACTGTCGTGTTTTGGTA
GTCTTTGTGGTTGCAAATGACTGAGTGGAAGTATCCTTCTGGGGATGACA
AGAAATTCGTGTAGTACATGAGGAGAGTACGAGGGAGATTATCCCATCCC
CAAATACAGAATTCTAGAAATGATCTCGTCAGCACCACCCATGCCGACCC
CATGAATAACTTGAAAGAAGCAGGCATGGATCTTTTCTCTTTAGCCCAAA
ATACACCAAATTTTTTTGGATGGTACAACCCTGGATCGATGATGATGGGC
CTTGCTCTTTGATACTCTTTCCAACCAATACTACTCGTGTGCTCAAGGAA
GTTCAGATACTTAGGCAAGTACGAGAAAATGTGCAGAATATCATCTTGTG
ACATGAGAGGATAGTCAGAAGCACTCAAATTAATAAACCAATCCCAATCC
T
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