FC878140
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC878140 vs. ExPASy Swiss-Prot
Match: GRWD1_DICDI (Glutamate-rich WD repeat-containing protein 1 OS=Dictyostelium discoideum GN=grwd1 PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 7.657e-23 Identity = 58/152 (38.16%), Postives = 78/152 (51.32%), Query Frame = 2 Query: 389 PTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKKRELVPNKPSNXXXXXXXXXXXXXXXXXXXXXGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASW 844 P KVW+ GVD LEE E L D TAY+ +H+ + WPCLSF ++D LG RN++PHT Y VAGTQA++ N + + K ++L K + P LQL + H G VNRIR+M Q +I A+W Sbjct: 68 PKKVWRAGVDPLEEDEVLDYDSTAYDMMHSMSVEWPCLSFHPIKDELGAQRNKYPHTMYLVAGTQADEAKNNKVIIMKA-------KQLHKTKHDDEDSDDDEDSDDDEESDDEDDEDKDVDPELQLAFINHNGAVNRIRSMDQQSNIVATW 212
BLAST of FC878140 vs. ExPASy Swiss-Prot
Match: GRWD1_HUMAN (Glutamate-rich WD repeat-containing protein 1 OS=Homo sapiens GN=GRWD1 PE=1 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 3.224e-13 Identity = 53/141 (37.59%), Postives = 66/141 (46.81%), Query Frame = 2 Query: 389 PTKVWQPGVDK-LEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKKRELVPNKPSNXXXXXXXXXXXXXXXXXXXXXGGSGTPILQLRKVAHQGCVNRIR 808 P +V+ PG L EGEEL D AY H G PCLSFDIVRD LG R E P T Y AGTQAE N + + ++ N+ G K P++ S+ P L+L V H G +NR+R Sbjct: 29 PAQVYLPGRGPPLREGEELVMDEEAYVLYHRAQTGAPCLSFDIVRDHLGDNRTELPLTLYLCAGTQAESAQSNRLMMLRMHNLHGTKPP--PSEGSDEEEEEEDEEDEE-----------ERKPQLELAMVPHYGGINRVR 156
BLAST of FC878140 vs. ExPASy Swiss-Prot
Match: GRWD1_MOUSE (Glutamate-rich WD repeat-containing protein 1 OS=Mus musculus GN=Grwd1 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.225e-12 Identity = 51/141 (36.17%), Postives = 67/141 (47.52%), Query Frame = 2 Query: 389 PTKVWQPGVDK-LEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKKRELVPNKPSNXXXXXXXXXXXXXXXXXXXXXGGSGTPILQLRKVAHQGCVNRIR 808 P++V+ PG L EGEEL D AY H G PCLSFDIVRD LG R E P + Y AGTQAE N + + ++ N+ G + P++ S+ P L+L V H G +NR+R Sbjct: 29 PSQVYLPGRGPPLSEGEELVMDEEAYVLYHRAQTGAPCLSFDIVRDHLGDNRTELPLSLYLCAGTQAESAQSNRLMMLRMHNLHGTRPS--PSEGSDDDEEDEDEEDEE-----------EQKPQLELAMVPHYGGINRVR 156
BLAST of FC878140 vs. ExPASy Swiss-Prot
Match: GRWD1_BOVIN (Glutamate-rich WD repeat-containing protein 1 OS=Bos taurus GN=GRWD1 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.090e-12 Identity = 52/139 (37.41%), Postives = 62/139 (44.60%), Query Frame = 2 Query: 395 KVWQPGVDK-LEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKKRELVPNKPSNXXXXXXXXXXXXXXXXXXXXXGGSGTPILQLRKVAHQGCVNRIR 808 +V+ PG L EGEEL D AY H G PCLSFDIVRD LG R E P T Y AGTQAE N + + ++ N+ G K P P P L+L V H G +NR+R Sbjct: 31 QVYLPGRGPPLREGEELVMDEEAYVLYHRAQTGAPCLSFDIVRDHLGDNRTELPLTLYLCAGTQAESSQSNRLMMLRMHNLHGTK----PPPPEGSDDEEEEDDEEDEE---------ERKPQLELAMVPHYGGINRVR 156
BLAST of FC878140 vs. ExPASy Swiss-Prot
Match: GRWD1_RAT (Glutamate-rich WD repeat-containing protein 1 OS=Rattus norvegicus GN=Grwd1 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.730e-12 Identity = 51/141 (36.17%), Postives = 67/141 (47.52%), Query Frame = 2 Query: 389 PTKVWQPGVDK-LEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKKRELVPNKPSNXXXXXXXXXXXXXXXXXXXXXGGSGTPILQLRKVAHQGCVNRIR 808 P++V+ PG L EGEEL D AY H G PCLSFDIVRD LG R E P + Y AGTQAE N + + ++ N+ G + P++ S+ P L+L V H G +NR+R Sbjct: 29 PSQVYLPGRGPPLGEGEELVMDEEAYVLYHRAQTGAPCLSFDIVRDHLGDNRTELPLSLYLCAGTQAESAQSNRLMMLRMHNLHGTRPP--PSEGSDDEDDEDEEDEE------------ERKPQLELAMVPHYGGINRVR 155
BLAST of FC878140 vs. ExPASy Swiss-Prot
Match: RRB1_SCHPO (Ribosome assembly protein rrb1 OS=Schizosaccharomyces pombe GN=rrb1 PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 7.942e-12 Identity = 43/142 (30.28%), Postives = 68/142 (47.89%), Query Frame = 2 Query: 389 PTKV-WQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKKRELVPNKPSNXXXXXXXXXXXXXXXXXXXXXGGSGTPILQLRKVAHQGCVNRIRA 811 P+K+ W PG K+ E+L DP+ Y LH + WP LSFDI++D+LG R +PH Y V G+QA + N + V K+S + + + + N PIL+ + ++ +G NR+R+ Sbjct: 70 PSKIPWLPG-GKINADEKLVADPSVYEMLHNIQVKWPFLSFDILQDSLGEERRAWPHQMYLVGGSQALDSNDNELTVMKLSQLYKTQHDENDDASDNSDV--------------------EEDPILEHKSISTKGACNRVRS 190 The following BLAST results are available for this feature:
BLAST of FC878140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878140 ID=FC878140; Name=FC878140; organism=Citrus clementina; type=EST; length=845bpback to top |