FC878140

Overview
NameFC878140
Unique NameFC878140
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length845
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7420 contig Ccv1_Contig7420:32..876. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878140 vs. ExPASy Swiss-Prot
Match: GRWD1_DICDI (Glutamate-rich WD repeat-containing protein 1 OS=Dictyostelium discoideum GN=grwd1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.657e-23
Identity = 58/152 (38.16%), Postives = 78/152 (51.32%), Query Frame = 2
Query:  389 PTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKKRELVPNKPSNXXXXXXXXXXXXXXXXXXXXXGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASW 844
            P KVW+ GVD LEE E L  D TAY+ +H+  + WPCLSF  ++D LG  RN++PHT Y VAGTQA++   N + + K        ++L   K  +                          P LQL  + H G VNRIR+M Q  +I A+W
Sbjct:   68 PKKVWRAGVDPLEEDEVLDYDSTAYDMMHSMSVEWPCLSFHPIKDELGAQRNKYPHTMYLVAGTQADEAKNNKVIIMKA-------KQLHKTKHDDEDSDDDEDSDDDEESDDEDDEDKDVDPELQLAFINHNGAVNRIRSMDQQSNIVATW 212          
BLAST of FC878140 vs. ExPASy Swiss-Prot
Match: GRWD1_HUMAN (Glutamate-rich WD repeat-containing protein 1 OS=Homo sapiens GN=GRWD1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.224e-13
Identity = 53/141 (37.59%), Postives = 66/141 (46.81%), Query Frame = 2
Query:  389 PTKVWQPGVDK-LEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKKRELVPNKPSNXXXXXXXXXXXXXXXXXXXXXGGSGTPILQLRKVAHQGCVNRIR 808
            P +V+ PG    L EGEEL  D  AY   H    G PCLSFDIVRD LG  R E P T Y  AGTQAE    N + + ++ N+ G K    P++ S+                          P L+L  V H G +NR+R
Sbjct:   29 PAQVYLPGRGPPLREGEELVMDEEAYVLYHRAQTGAPCLSFDIVRDHLGDNRTELPLTLYLCAGTQAESAQSNRLMMLRMHNLHGTKPP--PSEGSDEEEEEEDEEDEE-----------ERKPQLELAMVPHYGGINRVR 156          
BLAST of FC878140 vs. ExPASy Swiss-Prot
Match: GRWD1_MOUSE (Glutamate-rich WD repeat-containing protein 1 OS=Mus musculus GN=Grwd1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.225e-12
Identity = 51/141 (36.17%), Postives = 67/141 (47.52%), Query Frame = 2
Query:  389 PTKVWQPGVDK-LEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKKRELVPNKPSNXXXXXXXXXXXXXXXXXXXXXGGSGTPILQLRKVAHQGCVNRIR 808
            P++V+ PG    L EGEEL  D  AY   H    G PCLSFDIVRD LG  R E P + Y  AGTQAE    N + + ++ N+ G +    P++ S+                          P L+L  V H G +NR+R
Sbjct:   29 PSQVYLPGRGPPLSEGEELVMDEEAYVLYHRAQTGAPCLSFDIVRDHLGDNRTELPLSLYLCAGTQAESAQSNRLMMLRMHNLHGTRPS--PSEGSDDDEEDEDEEDEE-----------EQKPQLELAMVPHYGGINRVR 156          
BLAST of FC878140 vs. ExPASy Swiss-Prot
Match: GRWD1_BOVIN (Glutamate-rich WD repeat-containing protein 1 OS=Bos taurus GN=GRWD1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.090e-12
Identity = 52/139 (37.41%), Postives = 62/139 (44.60%), Query Frame = 2
Query:  395 KVWQPGVDK-LEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKKRELVPNKPSNXXXXXXXXXXXXXXXXXXXXXGGSGTPILQLRKVAHQGCVNRIR 808
            +V+ PG    L EGEEL  D  AY   H    G PCLSFDIVRD LG  R E P T Y  AGTQAE    N + + ++ N+ G K    P  P                            P L+L  V H G +NR+R
Sbjct:   31 QVYLPGRGPPLREGEELVMDEEAYVLYHRAQTGAPCLSFDIVRDHLGDNRTELPLTLYLCAGTQAESSQSNRLMMLRMHNLHGTK----PPPPEGSDDEEEEDDEEDEE---------ERKPQLELAMVPHYGGINRVR 156          
BLAST of FC878140 vs. ExPASy Swiss-Prot
Match: GRWD1_RAT (Glutamate-rich WD repeat-containing protein 1 OS=Rattus norvegicus GN=Grwd1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.730e-12
Identity = 51/141 (36.17%), Postives = 67/141 (47.52%), Query Frame = 2
Query:  389 PTKVWQPGVDK-LEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKKRELVPNKPSNXXXXXXXXXXXXXXXXXXXXXGGSGTPILQLRKVAHQGCVNRIR 808
            P++V+ PG    L EGEEL  D  AY   H    G PCLSFDIVRD LG  R E P + Y  AGTQAE    N + + ++ N+ G +    P++ S+                          P L+L  V H G +NR+R
Sbjct:   29 PSQVYLPGRGPPLGEGEELVMDEEAYVLYHRAQTGAPCLSFDIVRDHLGDNRTELPLSLYLCAGTQAESAQSNRLMMLRMHNLHGTRPP--PSEGSDDEDDEDEEDEE------------ERKPQLELAMVPHYGGINRVR 155          
BLAST of FC878140 vs. ExPASy Swiss-Prot
Match: RRB1_SCHPO (Ribosome assembly protein rrb1 OS=Schizosaccharomyces pombe GN=rrb1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.942e-12
Identity = 43/142 (30.28%), Postives = 68/142 (47.89%), Query Frame = 2
Query:  389 PTKV-WQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKKRELVPNKPSNXXXXXXXXXXXXXXXXXXXXXGGSGTPILQLRKVAHQGCVNRIRA 811
            P+K+ W PG  K+   E+L  DP+ Y  LH   + WP LSFDI++D+LG  R  +PH  Y V G+QA   + N + V K+S +   + +   +   N                          PIL+ + ++ +G  NR+R+
Sbjct:   70 PSKIPWLPG-GKINADEKLVADPSVYEMLHNIQVKWPFLSFDILQDSLGEERRAWPHQMYLVGGSQALDSNDNELTVMKLSQLYKTQHDENDDASDNSDV--------------------EEDPILEHKSISTKGACNRVRS 190          
The following BLAST results are available for this feature:
BLAST of FC878140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
GRWD1_DICDI7.657e-2338.16Glutamate-rich WD repeat-containing protein 1 OS=D... [more]
GRWD1_HUMAN3.224e-1337.59Glutamate-rich WD repeat-containing protein 1 OS=H... [more]
GRWD1_MOUSE1.225e-1236.17Glutamate-rich WD repeat-containing protein 1 OS=M... [more]
GRWD1_BOVIN2.090e-1237.41Glutamate-rich WD repeat-containing protein 1 OS=B... [more]
GRWD1_RAT2.730e-1236.17Glutamate-rich WD repeat-containing protein 1 OS=R... [more]
RRB1_SCHPO7.942e-1230.28Ribosome assembly protein rrb1 OS=Schizosaccharomy... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA64AE08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA64AE08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878140 ID=FC878140; Name=FC878140; organism=Citrus clementina; type=EST; length=845bp
CTCCAACGGAGCTTCCCCTTCCCGGCCGCCGCGTCGAACACCGGAAGAAC
AAGCTTCGCCGTCAACGCCGCTCTCCTCTCTTGCCTGAAGACCAAGCTTT
GCCGCAGTCCGCTAACCCTTTCTCGACGGCGCTCTCATTTCTCACCGGCC
TCGGACTCAACCACCCCTCGCCGCCTTCGCTGCCATTCGATCAATCTAGC
AAACAACCGGGACTGCAGTGTCAATAACCTGACAACAAAACCCACGATAG
CATCATCAGTTTCAAAACCAACTGAAAAATACAAGTGATAAAATGGTTCG
AAGCATCAAGAACCCCAAGAAGGCCAAAAGAAAGAACAAGGTCGCAAAAA
AAGGAGATGGGTCATCTTCTTCTTCAATTCCGAGTTTACCAACAAAGGTG
TGGCAACCAGGAGTTGACAAGTTAGAGGAAGGAGAGGAGCTTCAATGTGA
CCCTACTGCCTATAATTCCCTTCACGCCTTTCACATTGGTTGGCCTTGTT
TAAGCTTTGACATTGTGCGTGATACCTTGGGTTTAGTACGGAATGAGTTT
CCACATACAGCGTATTTTGTTGCAGGGACTCAGGCAGAGAAACCTTCTTG
GAACTCTATTGGAGTATTTAAAGTCTCTAACATTTCTGGAAAGAAGCGTG
AATTAGTACCTAACAAACCCTCTAATGATGATGAAGATGTGGATAGCGAA
AGTAGCGACAGTGATGAAGATAGTGATGATGACGAGGAAGGTGGGTCTGG
GACACCGATTTTGCAGTTGCGCAAGGTAGCTCATCAAGGATGTGTCAATC
GTATACGTGCTATGACACAAAATCCTCATATATGTGCATCTTGGG
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