FC878141

Overview
NameFC878141
Unique NameFC878141
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length846
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878141 vs. ExPASy Swiss-Prot
Match: NEP2_NEPGR (Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.035e-20
Identity = 81/245 (33.06%), Postives = 118/245 (48.16%), Query Frame = -1
Query:   64 CAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRXXXXXXXXXXXXXQ-DSISLVSQTSRKYKKYFSYCLPXXXXST-GHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFS-----SAGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDF-SNYTSISVPVISFFFNRGVEVSIEGSAILIGSSPKQICLAFAGNS 774
            C  + C Y   YGD S + G+ A ET T  +S V PN  FGCG+ N+                 +SL SQ        FSYC+     S+   L  G AA   P  +   T L  ++ + ++Y + + G++VGG  L IP S F      + G IIDSGT +T LP  AY+A+   F   ++      + S L TC+   S+ +++ VP IS  F+ GV +++    ILI  +   ICLA   +S
Sbjct:  164 CNNNECQYTYGYGDGSTTQGYMATETFTFETSSV-PNIAFGCGEDNQGFGQGNGAGLIGMGWGPLSLPSQLG---VGQFSYCMTSYGSSSPSTLALGSAASGVPEGSPS-TTLIHSSLNPTYYYITLQGITVGGDNLGIPSSTFQLQDDGTGGMIIDSGTTLTYLPQDAYNAVAQAFTDQINLPTVDESSSGLSTCFQQPSDGSTVQVPEISMQFDGGV-LNLGEQNILISPAEGVICLAMGSSS 402          

HSP 2 Score: 20.4014 bits (41), Expect = 1.035e-20
Identity = 6/14 (42.86%), Postives = 11/14 (78.57%), Query Frame = -3
Query:    2 VIGNVQQKTLEVVY 43
            + GN+QQ+  +V+Y
Sbjct:  408 IFGNIQQQETQVLY 421          
BLAST of FC878141 vs. ExPASy Swiss-Prot
Match: NEP1_NEPGR (Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.625e-17
Identity = 74/254 (29.13%), Postives = 113/254 (44.49%), Query Frame = -1
Query:   49 TPQCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNR-XXXXXXXXXXXXXQDSISLVSQTSRKYKKYFSYCL-PXXXXSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFS------SAGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDF-SNYTSISVPVISFFFNRGVEVSIEGSAILIGSSPKQICLAFAGNSDDSDV 783
            +P C+ + C Y   YGD S + G    ETLT  S  + PN  FGCG+ N+              +  +SL SQ        FSYC+ P    +  +L  G  A N  +     T L  ++   +FY + + GLSVG  +LPI  S F+      + G IIDSGT +T     AY ++R  F   ++      + S  D C+   S+ +++ +P     F+ G ++ +      I  S   ICLA   +S    +
Sbjct:  160 SPTCSNNFCQYTYGYGDGSETQGSMGTETLTFGSVSI-PNITFGCGENNQGFGQGNGAGLVGMGRGPLSLPSQLD---VTKFSYCMTPIGSSTPSNLLLGSLA-NSVTAGSPNTTLIQSSQIPTFYYITLNGLSVGSTRLPIDPSAFALNSNNGTGGIIIDSGTTLTYFVNNAYQSVRQEFISQINLPVVNGSSSGFDLCFQTPSDPSNLQIPTFVMHFDGG-DLELPSENYFISPSNGLICLAMGSSSQGMSI 407          

HSP 2 Score: 21.1718 bits (43), Expect = 4.625e-17
Identity = 7/14 (50.00%), Postives = 11/14 (78.57%), Query Frame = -3
Query:    2 VIGNVQQKTLEVVY 43
            + GN+QQ+ + VVY
Sbjct:  407 IFGNIQQQNMLVVY 420          
The following BLAST results are available for this feature:
BLAST of FC878141 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NEP2_NEPGR1.035e-2033.06Aspartic proteinase nepenthesin-2 OS=Nepenthes gra... [more]
NEP1_NEPGR4.625e-1729.13Aspartic proteinase nepenthesin-1 OS=Nepenthes gra... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA88DH10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA88DH10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878141 ID=FC878141; Name=FC878141; organism=Citrus clementina; type=EST; length=846bp
CGTACACAACCTCCAGCGTCTTTTGCTGCACATTCCCAATTACTATTCAA
CGTCGCTGTCATCACTATTGCCGGCGAATGCTAGACATATCTGCTTCGGA
CTACTGCCAATCAAAATCGCAGACCCTTCAATGCTCACCTCAACTCCTCG
GTTAAAGAAGAAGCTAATCACAGGCACTGAAATAGAAGTATAATTACTAA
AGTCGTAGCACGTGTCAAGAATCGACAAAGCTGGCGCCGTTGGATATTTT
GACATAAATTTCTTAAATGTTGATCGTAGGGCTGAGTATGCAGCCGGTGG
CAGGCGTGTGATGACAGTTCCGGAATCAATAATAGCACCTGCTGATGAAA
ACACTGAGATGGGGATTGGTAATTTTTTGCCACCAACACTAAGGCCAATA
ATGTCAAGGCCGTAAAAGGATGAGTCTGCGGTGGCAGTTGACAGTGGGGT
GAATTTTATGGTTTTCGAGGGGCCATTGCCGGCAGCTTTGCCAAAAGTGA
GGTGACCTGTTGAGCTGGATGATGATGGAAGGCAATAAGAGAAGTATTTT
TTGTATTTTCGGGAAGTTTGGGAGACTAACGAGATCGAGTCTTGGCCGAG
ACCGAGCAAGCCAGCCGCTTGACCATATAGGCCGCGGTTGTATTGGCCAC
AGCCGAAGAGGAAGTTGGGGAAAACATCTGAAGATGTCAGGGTTAGGGTT
TCTTTGGCAAAGAATCCAGCGGAAAATGAGTTGTCTCCATACTCGATGCC
GTAAACACATGTTGAGCCTGCACATTGTGGCGTCATACCTGCATACATAT
ATTACGTAGGAAAAGAAATCTTTGTCGAAAGAGTCTTGAATGGATT
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