FC878144

Overview
NameFC878144
Unique NameFC878144
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length884
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878144_ssr363 microsatellite FC878144_ssr363:363..377. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4087 contig Ccv1_Contig4087:1..884. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC878144 vs. ExPASy Swiss-Prot
Match: ATB54_ARATH (Homeobox-leucine zipper protein ATHB-54 OS=Arabidopsis thaliana GN=ATHB-54 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.116e-19
Identity = 53/114 (46.49%), Postives = 68/114 (59.65%), Query Frame = 3 
Query:    3 SRKRDKPYPSRHD----ANSXXXXXXXXXXXXXXXXXXYVKPLPPPAVVVMGLRPNCSVLDLKSRFEIYGAISRIRIDRNRLGYITYRTKDSXXXXXXXXXXXSFGITVDSQKV 332
            SRKRDKPY +RH     +                      KP PPPA+VVMGL  NCSVL+LKSRFEIYG+ISRIRI ++ +G ++YRT +S           SFGI++DS+K+
Sbjct:  292 SRKRDKPYTNRHTPARISKRRRPWAPSSSEHDEIIDKPITKPPPPPALVVMGLPANCSVLELKSRFEIYGSISRIRIHKDGIGSVSYRTAESAEAAIAGSHEPSFGISIDSKKL 405
The following BLAST results are available for this feature:
BLAST of FC878144 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ATB54_ARATH1.116e-1946.49Homeobox-leucine zipper protein ATHB-54 OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA30BA10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA30BA10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878144 ID=FC878144; Name=FC878144; organism=Citrus clementina; type=EST; length=884bp
TGAGTCGCAAGCGAGACAAGCCCTACCCCTCCCGCCACGACGCTAATTCA
GCCCCAAAACGACGTCGTCCTCTCCCTCGTCCCGCCGCCGACGATGATAA
GCCATACGTCAAGCCGTTGCCGCCTCCAGCCGTGGTGGTGATGGGTCTGC
GGCCGAACTGCTCGGTGCTTGATTTAAAGTCGAGGTTTGAGATCTACGGC
GCCATCTCCCGCATCCGCATCGATCGCAATCGTCTCGGATACATTACCTA
CCGGACAAAAGATTCTGCTGAAGCTGCCATTGCTGCTGCCCTTGATGCCT
CCTTCGGCATCACAGTTGATTCACAAAAGGTATAAATAAATTCATGTTGT
TTGGTAAAATTGATTATTATTATTATTTTTTTTTTGGTTGGAGTCAAATT
TTGATGCTTTTCATTTTTACGTTTGGTTATAGTGACTGAATTGGACTCAA
TTCAAGTTGATTTTCTGGTTCAATTGATTGCAGGAATTTCTAATTTTTTT
TTCCATGAGTTATCTTAGTTTCAAATTAGCAAAATAAATAAAGAAAGCTT
TTCAATTCAACCCTTTGCCTTTTCATACATGGCTTGAAGCTTGACCTTTG
CTTACGAATTTGACCTCGGCTCTTCCAAGTGCTGATGTCTTCTTAATTCA
GTATTCTAAAGCTCTTGCGAGCGCTTAGACCATTCGAGTTCTTCTTCTCT
TTGGTACCGTTTGGTTTTAAAATTACAATCAGATACCGACATTGGTGTTC
TTGTTGCAGGTCCAGGTTTTATGGGCAACAGATCCTCTAGCCCAATGGAA
GGAAGCAGTGAAGAGTGGTGCCAATAAGGACATTGGTTCATCTTCTAAGC
TTTTGCGTGCTGAGGTGCCTCTCAGCAGACATGG
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