FC878156

Overview
NameFC878156
Unique NameFC878156
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length868
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13200 contig Ccv1_Contig13200:56..923. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878156 vs. ExPASy Swiss-Prot
Match: SYWC_PONAB (Tryptophanyl-tRNA synthetase, cytoplasmic OS=Pongo abelii GN=WARS PE=2 SV=2)

HSP 1 Score: 276.559 bits (706), Expect = 1.305e-73
Identity = 130/222 (58.56%), Postives = 169/222 (76.13%), Query Frame = 1
Query:  214 VSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCL 867
            V PW V  SS+  IDYDKLI +FG  ++D+ L++R++R TG+ PH FLRRG+FF+HRD+N +LDAYE  + FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F VPLVIQ+TDDEK +WK+L+++++   A ENAKDIIACGFD+ KTFIFSD DY+G    FYKN+VK+ K VT+N+V GIFGFT  D IGK+SFP +QA              +  ++CL
Sbjct:   86 VDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHRFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCL 307          
BLAST of FC878156 vs. ExPASy Swiss-Prot
Match: SYWC_HUMAN (Tryptophanyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=WARS PE=1 SV=2)

HSP 1 Score: 276.559 bits (706), Expect = 1.305e-73
Identity = 130/222 (58.56%), Postives = 169/222 (76.13%), Query Frame = 1
Query:  214 VSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCL 867
            V PW V  SS+  IDYDKLI +FG  ++D+ L++R++R TG+ PH FLRRG+FF+HRD+N +LDAYE  + FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F VPLVIQ+TDDEK +WK+L+++++   A ENAKDIIACGFD+ KTFIFSD DY+G    FYKN+VK+ K VT+N+V GIFGFT  D IGK+SFP +QA              +  ++CL
Sbjct:   85 VDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCL 306          
BLAST of FC878156 vs. ExPASy Swiss-Prot
Match: SYWC_RAT (Tryptophanyl-tRNA synthetase, cytoplasmic OS=Rattus norvegicus GN=Wars PE=1 SV=2)

HSP 1 Score: 274.633 bits (701), Expect = 4.959e-73
Identity = 133/222 (59.91%), Postives = 169/222 (76.13%), Query Frame = 1
Query:  214 VSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGA--FYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCL 867
            V PW V  SS+  IDYDKLI +FG  ++D+ L++R++R TG+ PH FLRRG+FF+HRD+N ILDAYE  + FYLYTGRGPSSEA+HLGHLVPF+FTK+LQD F VPLVIQ++DDEK +WK+L++E++     ENAKDIIACGFDV KTFIFSD +Y+G +  FYKN+VK+ K VT+N+V GIFGFT  D IGK+SFP VQA              +  ++CL
Sbjct:   89 VDPWTVRTSSAKGIDYDKLIVQFGSSKIDKELINRIERATGQRPHRFLRRGIFFSHRDMNQILDAYENKKPFYLYTGRGPSSEAMHLGHLVPFIFTKWLQDVFDVPLVIQMSDDEKYLWKDLTLEQAYSYTVENAKDIIACGFDVNKTFIFSDLEYMGQSPGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAVQAAPSFSNSFPKIFRDRTDIQCL 310          
BLAST of FC878156 vs. ExPASy Swiss-Prot
Match: SYWC_RABIT (Tryptophanyl-tRNA synthetase, cytoplasmic OS=Oryctolagus cuniculus GN=WARS PE=2 SV=3)

HSP 1 Score: 274.248 bits (700), Expect = 6.476e-73
Identity = 131/222 (59.01%), Postives = 168/222 (75.68%), Query Frame = 1
Query:  214 VSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCL 867
            V PW V  SS+  IDYDKLI +FG  ++D+ LV+R++R TG+ PH FLRRG+FF+HRD+N +LDAYE  + FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F VPLV+Q++DDEK +WK+L++E+      ENAKDIIACGFDV KTFIFSD DY+G    FYKN+VK+ K VT+N+V GIFGFT  D IGK+SFP +QA             G+  ++CL
Sbjct:   89 VDPWTVRTSSAKGIDYDKLIVQFGSSKIDKELVNRIERATGQRPHRFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFDVPLVVQMSDDEKYLWKDLTLEQVYGYTLENAKDIIACGFDVNKTFIFSDLDYMGMSPGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFHGQADIQCL 310          
BLAST of FC878156 vs. ExPASy Swiss-Prot
Match: SYWC_BOVIN (Tryptophanyl-tRNA synthetase, cytoplasmic OS=Bos taurus GN=WARS PE=1 SV=3)

HSP 1 Score: 273.863 bits (699), Expect = 8.459e-73
Identity = 131/222 (59.01%), Postives = 169/222 (76.13%), Query Frame = 1
Query:  214 VSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCL 867
            V PW V  SS+  IDYDKLI +FG  ++D+ LV+R++R TG+ PH FLRRG+FF+HRD++ ILDAYE  + FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F VPLVIQ+TDDEK +WK+L+++++   A ENAKDIIACGFD+ KTFIFSD DY+G    FYKN+VK+ K VT+N+V GIFGFT  D IGK+SFP +QA              +  ++CL
Sbjct:   90 VDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELVNRIERATGQRPHRFLRRGIFFSHRDMHQILDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGYAVENAKDIIACGFDINKTFIFSDLDYMGMSPGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDVQCL 311          
BLAST of FC878156 vs. ExPASy Swiss-Prot
Match: SYWC_MOUSE (Tryptophanyl-tRNA synthetase, cytoplasmic OS=Mus musculus GN=Wars PE=1 SV=2)

HSP 1 Score: 273.478 bits (698), Expect = 1.105e-72
Identity = 131/222 (59.01%), Postives = 169/222 (76.13%), Query Frame = 1
Query:  214 VSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGA--FYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCL 867
            V PW V  SS+  IDYDKLI +FG  ++D+ L++R++R TG+ PH FLRRG+FF+HRD+N ILDAYE  + FYLYTGRGPSSEA+HLGHLVPF+FTK+LQD F VPLVIQ++DDEK +WK+L++E++     ENAKDIIACGFD+ KTFIFSD +Y+G +  FY+N+VK+ K VT+N+V GIFGFT  D IGK+SFP VQA              +  ++CL
Sbjct:   89 VDPWTVRTSSAKGIDYDKLIVQFGSSKIDKELINRIERATGQRPHRFLRRGIFFSHRDMNQILDAYENKKPFYLYTGRGPSSEAMHLGHLVPFIFTKWLQDVFNVPLVIQMSDDEKYLWKDLTLEQAYSYTVENAKDIIACGFDINKTFIFSDLEYMGQSPGFYRNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAVQAAPSFSNSFPKIFRDRTDIQCL 310          
BLAST of FC878156 vs. ExPASy Swiss-Prot
Match: SYWC_SCHPO (Tryptophanyl-tRNA synthetase, cytoplasmic OS=Schizosaccharomyces pombe GN=wrs1 PE=1 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 2.467e-64
Identity = 119/226 (52.65%), Postives = 160/226 (70.80%), Query Frame = 1
Query:  211 VVSPWEVSSS------GKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCL 867
            +V+PW+V  S        IDY++LI +FG +++    ++R ++LTG+ PH+ LRRG FF+HRD + ILD YE+ + FYLYTGRGPSS+++HLGH++PFMF K+LQD F+VPLVIQLTDDEK ++K  +S+E+ QR ARENAKDIIA GFD  KTFIF +  YVGGAFY+N+V++AKC+T N+    FGFT  D IGK+ F  +QA             G   + CL
Sbjct:    7 IVTPWDVKGSIVDGEEKGIDYERLIVQFGTRKITPEQLERFEKLTGKKPHLLLRRGAFFSHRDFDMILDRYEQKKPFYLYTGRGPSSDSMHLGHMIPFMFCKWLQDVFQVPLVIQLTDDEKFLFKQGVSLEDCQRFARENAKDIIAVGFDPKKTFIFMNSTYVGGAFYQNVVRIAKCITANQSKACFGFTDSDSIGKIHFASIQAAPSFSSSFPHIFNGAKDIPCL 232          
BLAST of FC878156 vs. ExPASy Swiss-Prot
Match: SYWC_DICDI (Tryptophanyl-tRNA synthetase, cytoplasmic OS=Dictyostelium discoideum GN=trpS PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 9.374e-64
Identity = 111/200 (55.50%), Postives = 154/200 (77.00%), Query Frame = 1
Query:  211 VVSPWEVSSS--GKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQA 804
            V++PWEV ++  G +DY KL+D+FG   + + L+ R +++TG+  H FLRRG+FF+HRDL +ILD +E G+K++LYTGRGPSS +LH GHL+PF FTKYLQDAF VPLV+Q+T+DEK +WK++++EES +    N KDIIA GFD+ KTFIFS+ +Y+    Y N++K+A+CV  N++  IFGF   D IGK +FPPVQA
Sbjct:   15 VITPWEVEAAPGGSVDYMKLVDQFGSTVISEELIARFEKVTGKRAHHFLRRGIFFSHRDLKEILDHHESGKKWFLYTGRGPSSGSLHFGHLLPFTFTKYLQDAFNVPLVVQMTNDEKFLWKDMTLEESIKFTHNNVKDIIALGFDIQKTFIFSNLEYI-HHLYPNVLKIARCVNLNQIQNIFGFKESDAIGKFTFPPVQA 213          
BLAST of FC878156 vs. ExPASy Swiss-Prot
Match: SYWC_YEAST (Tryptophanyl-tRNA synthetase, cytoplasmic OS=Saccharomyces cerevisiae GN=WRS1 PE=1 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.004e-57
Identity = 106/205 (51.71%), Postives = 150/205 (73.17%), Query Frame = 1
Query:  211 VVSPWEVSS-------SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQ 801
            VV+PW+V         +  IDYDKLI +FG + +++  + R +++TGR PH FLR+G+FF+ RD   ILD YE+G+ F+LYTGRGPSS+++HLGH++PF+FTK+LQ+ F VPLVI+LTDDEK ++K+ L++ + +  ARENAKDIIA GFD   TFIFSD  Y+GGAFY+ +V+V++ +T +    +FGF   D IGK  F  +Q
Sbjct:   26 VVTPWDVEGGVDEQGRAQNIDYDKLIKQFGTKPVNEETLKRFKQVTGREPHHFLRKGLFFSERDFTKILDLYEQGKPFFLYTGRGPSSDSMHLGHMIPFVFTKWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPKNTFIFSDLQYMGGAFYETVVRVSRQITGSTAKAVFGFNDSDCIGKFHFASIQ 230          
BLAST of FC878156 vs. ExPASy Swiss-Prot
Match: SYW_ENCCU (Tryptophanyl-tRNA synthetase OS=Encephalitozoon cuniculi GN=ECU11_0530 PE=1 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 3.947e-54
Identity = 94/199 (47.24%), Postives = 140/199 (70.35%), Query Frame = 1
Query:  214 VSPWEVSSSGK------IDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFP 792
            ++PW+V           IDYDK+I++FGC++ +Q+L DR+++L+G+P H F RRG+ FAHRD N +LD       FYLYTGRGPSS+ +H+GH +PF+  KY+QDAFK+ LVIQ+TDDEK +WK++ +E++    REN KDI+A GFD   T+IFS+ +     F +N++K++K +  N+ + +FGF    +IG+V FP
Sbjct:    6 ITPWDVEVVSTDEVPVAIDYDKIINQFGCEKFNQALADRLEKLSGKPAHYFFRRGIVFAHRDFNLLLDEIANNRPFYLYTGRGPSSKTMHIGHTIPFLLCKYMQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVALGFDPKLTYIFSNVE-ASHHFEENILKISKTINLNEAIKVFGFDMSSNIGQVGFP 203          
The following BLAST results are available for this feature:
BLAST of FC878156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
SYWC_PONAB1.305e-7358.56Tryptophanyl-tRNA synthetase, cytoplasmic OS=Pongo... [more]
SYWC_HUMAN1.305e-7358.56Tryptophanyl-tRNA synthetase, cytoplasmic OS=Homo ... [more]
SYWC_RAT4.959e-7359.91Tryptophanyl-tRNA synthetase, cytoplasmic OS=Rattu... [more]
SYWC_RABIT6.476e-7359.01Tryptophanyl-tRNA synthetase, cytoplasmic OS=Oryct... [more]
SYWC_BOVIN8.459e-7359.01Tryptophanyl-tRNA synthetase, cytoplasmic OS=Bos t... [more]
SYWC_MOUSE1.105e-7259.01Tryptophanyl-tRNA synthetase, cytoplasmic OS=Mus m... [more]
SYWC_SCHPO2.467e-6452.65Tryptophanyl-tRNA synthetase, cytoplasmic OS=Schiz... [more]
SYWC_DICDI9.374e-6455.50Tryptophanyl-tRNA synthetase, cytoplasmic OS=Dicty... [more]
SYWC_YEAST1.004e-5751.71Tryptophanyl-tRNA synthetase, cytoplasmic OS=Sacch... [more]
SYW_ENCCU3.947e-5447.24Tryptophanyl-tRNA synthetase OS=Encephalitozoon cu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA30BA12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA30BA12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878156 ID=FC878156; Name=FC878156; organism=Citrus clementina; type=EST; length=868bp
CCGTTATTCCGTCTCCCTTAGTCCCGCGATTGTGGCCACGACGACTCGCC
GCTGAACCTTCGAATTTCAGCCAAGCGATCACCGTTGGCCTCGCCACTCT
GCTTGCTATTGGAGCTGGAGTACTTGGAAAAGTATTAAAGCATAAACAAG
CAGTCAGTCAAAGAGATGGATAAGAATGAAGAGAAGCAACGGGAAGAAGA
AAGAGAGCAAGTGGTGAGTCCATGGGAAGTCTCATCTTCAGGAAAAATAG
ATTACGACAAACTCATCGACAAATTTGGATGCCAGCGACTCGACCAGTCG
TTGGTAGACAGAGTCCAACGACTCACTGGCCGCCCTCCTCACGTCTTTCT
CCGCCGCGGTGTTTTCTTTGCCCACCGAGATTTGAACGATATACTGGATG
CGTATGAGAAAGGGGAGAAATTTTATCTGTACACGGGAAGAGGGCCATCA
TCAGAAGCTTTGCATTTGGGGCATTTGGTTCCTTTCATGTTTACCAAGTA
CTTGCAAGATGCCTTTAAGGTTCCTCTTGTTATACAACTGACTGATGATG
AGAAGTGCATGTGGAAAAATCTTTCTGTTGAGGAGAGTCAAAGACTTGCA
AGGGAAAATGCAAAAGACATAATTGCCTGTGGTTTTGATGTAACAAAGAC
CTTTATCTTCTCTGATTTTGATTATGTCGGTGGTGCCTTCTACAAGAACA
TGGTGAAGGTTGCGAAGTGTGTCACATATAACAAGGTGGTTGGCATATTT
GGCTTCACTGGTGAAGATCATATTGGAAAAGTTAGTTTTCCACCAGTTCA
GGCGGTTCCATCATTTCCAAGTTCTTTCCCACACCTTTTCTCAGGCAAGG
ATCACCTTCGTTGCTTAA
back to top