FC878157

Overview
NameFC878157
Unique NameFC878157
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length777
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10499 contig Ccv1_Contig10499:1..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC878157 vs. ExPASy Swiss-Prot
Match: RL13A_LUPLU (60S ribosomal protein L13a OS=Lupinus luteus GN=RPL13A PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.455e-18
Identity = 46/54 (85.19%), Postives = 49/54 (90.74%), Query Frame = -3 
Query:  224 NYPDVGQELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDILAPVKY 385
            NY D  +ELEKKRKERSQV YERKKQLNKLR KAE+VA+EKLGSQLDILAPVKY
Sbjct:  152 NYYDTIKELEKKRKERSQVVYERKKQLNKLRVKAEQVAQEKLGSQLDILAPVKY 205
[Close]
BLAST of FC878157 vs. ExPASy Swiss-Prot
Match: R13A3_ARATH (60S ribosomal protein L13a-3 OS=Arabidopsis thaliana GN=RPL13AC PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.136e-17
Identity = 44/54 (81.48%), Postives = 48/54 (88.89%), Query Frame = -3 
Query:  224 NYPDVGQELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDILAPVKY 385
            N+ D  +ELE KRKERSQV YERKKQLNKLR KAEKVAEE+LGSQLD+LAPVKY
Sbjct:  153 NHYDTIKELETKRKERSQVMYERKKQLNKLRTKAEKVAEERLGSQLDVLAPVKY 206
[Close]
BLAST of FC878157 vs. ExPASy Swiss-Prot
Match: R13A1_ARATH (60S ribosomal protein L13a-1 OS=Arabidopsis thaliana GN=RPL13AA PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.590e-16
Identity = 43/54 (79.63%), Postives = 48/54 (88.89%), Query Frame = -3 
Query:  224 NYPDVGQELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDILAPVKY 385
            N+ D  +ELE KRKER+Q  YERKKQL+KLRAKAEKVAEEKLGSQLD+LAPVKY
Sbjct:  153 NHYDTIKELENKRKERAQAVYERKKQLSKLRAKAEKVAEEKLGSQLDVLAPVKY 206
[Close]
BLAST of FC878157 vs. ExPASy Swiss-Prot
Match: R13A4_ARATH (60S ribosomal protein L13a-4 OS=Arabidopsis thaliana GN=RPL13AD PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.542e-16
Identity = 43/54 (79.63%), Postives = 47/54 (87.04%), Query Frame = -3 
Query:  224 NYPDVGQELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDILAPVKY 385
            N+ D  +ELE KRKER+ V YERKKQLNKLR KAEKVAEEKLG+QLDILAPVKY
Sbjct:  153 NHYDTIKELETKRKERAHVVYERKKQLNKLRVKAEKVAEEKLGAQLDILAPVKY 206
[Close]
BLAST of FC878157 vs. ExPASy Swiss-Prot
Match: R13A2_ARATH (60S ribosomal protein L13a-2 OS=Arabidopsis thaliana GN=RPL13AB PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.296e-15
Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = -3 
Query:  224 NYPDVGQELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDILAPVKY 385
            N+ D  +ELE KRKERSQ  YERKKQL KLRAKAEKVAEEKLGSQLD+LA +KY
Sbjct:  153 NHYDTIKELEVKRKERSQALYERKKQLTKLRAKAEKVAEEKLGSQLDVLASIKY 206
The following BLAST results are available for this feature:
BLAST of FC878157 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RL13A_LUPLU6.455e-1885.1960S ribosomal protein L13a OS=Lupinus luteus GN=RP... [more]
R13A3_ARATH7.136e-1781.4860S ribosomal protein L13a-3 OS=Arabidopsis thalia... [more]
R13A1_ARATH1.590e-1679.6360S ribosomal protein L13a-1 OS=Arabidopsis thalia... [more]
R13A4_ARATH3.542e-1679.6360S ribosomal protein L13a-4 OS=Arabidopsis thalia... [more]
R13A2_ARATH2.296e-1577.7860S ribosomal protein L13a-2 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA64AE11FM1 IVIA1 Citrus clementina cDNA clone IC0AAA64AE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878157 ID=FC878157; Name=FC878157; organism=Citrus clementina; type=EST; length=777bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTAATAATAACACCACCAGTATATC
TAGAAATTTAACGAAATCATTCTACAACCATCAGTTTAAGTGGGGGAAAA
AAAAAGATAATCACTCAAGTTGTATCAAATTCTTAGCTTCTAAAAGTCTT
GAACAAAGTCGAAAACACAAAGGAAATTCAAGACAATGCTCAACAAAATT
GTTCTCAACAAGCTAACTGATCAATATTTGACAGGAGCAAGGATGTCCAA
TTGAGAGCCAAGTTTCTCTTCTGCAACCTTCTCAGCCTTAGCCCTAAGTT
TGTTGAGCTGCTTCTTCCTCTCATAAGCCACCTGTGACCTCTCCTTTCTC
TTCTTCTCAAGCTCCTGTCCAACATCGGGATAATTAGGGAAAATATTAAC
ATGCATATTTCATTCATCAATTACACTACAGCATAAACCTCAATATGTAG
ATAAAAGAAACTAGAAACATAAGCCATCTACCACTACAACCATCCACCTA
ATAAAGAACTAAAAACCAACAAAAAAACATGGGATCAGCACACTTCATTT
TTCACAATAAACTTCATTCAAAAATTGATGTAAAAAAATGATAGCATTGA
ACAATACTAACACGAAATCACTTGTTCACCAAACCAACATAATCCAATCA
TGAACACTAGTACTCAAGATACGCAGCAAACAATCACAGTGTCATCCCAT
CCCATTTTAAAAATTAGGGGCCTAAGAATTTGAAATTTTCCTTTGTACAA
CTTTTTGTCCTTCCATGTTCAGACAAC
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