FC878158

Overview
NameFC878158
Unique NameFC878158
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length852
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878158_ssr176 microsatellite FC878158_ssr176:176..187. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12854 contig Ccv1_Contig12854:67..918. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878158 vs. ExPASy Swiss-Prot
Match: AFR_ARATH (F-box protein AFR OS=Arabidopsis thaliana GN=AFR PE=1 SV=2)

HSP 1 Score: 260.381 bits (664), Expect = 9.342e-69
Identity = 130/213 (61.03%), Postives = 157/213 (73.71%), Query Frame = 2
Query:  218 TQPLIPGLPDEIGELCLLHVPYPYQALVRSVSYSWNKAITDPGFALCKKSLSLSLPYLFIFSFHKPTARIQWQALDPRSGRWFVLPPMP--CPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVT 850
            +QPLI GLP++I ELCLL +PYPY AL RSVS SWNK IT+P F   K+SLS+S PYLF+F+F+K TARIQWQ+LD  SGRWFVLPPMP    K   P A +C S+PRQGKLFVLGG   D     +S ++Y A TN+W   SPM++PR++F SGNVNGKIMAVGG+     E  T VE YDP++DTWT   KL M LA+YDSAV+G +M VT
Sbjct:   25 SQPLISGLPNDIAELCLLRLPYPYHALYRSVSSSWNKTITNPRFLFSKQSLSISSPYLFVFAFNKSTARIQWQSLDLASGRWFVLPPMPNSFTKISSPHALSCASMPRQGKLFVLGG--GDVN---RSAVVYTALTNRWSCISPMMSPRTYFVSGNVNGKIMAVGGSVGGNGEATTEVESYDPDNDTWTVVKKLPMVLAKYDSAVIGKEMCVT 232          
BLAST of FC878158 vs. ExPASy Swiss-Prot
Match: FBK17_ARATH (F-box/kelch-repeat protein At1g30090 OS=Arabidopsis thaliana GN=At1g30090 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.522e-39
Identity = 81/211 (38.39%), Postives = 116/211 (54.98%), Query Frame = 2
Query:  221 QPLIPGLPDEIGELCLLHVPYPYQALVRSVSYSWNKAI-TDPGFALCKKSLSLSLPYLFIFSFHKPTARIQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVT 850
            +PLIPGLPD++   CLL VP       +SV   W+    T   F   +K      P+LF+  F + T +IQW+ LD R+  W  +P MPC   VCP  F   S+PR+G +FV GGM SD++ P+   + Y    N W + + M+T RSFFASG ++G I A GG  A++ E +   E  +P    W   + +   +A YD+AV+  K+ VT
Sbjct:   51 EPLIPGLPDDVALNCLLRVPVQSHVSSKSVCKRWHLLFGTKETFFAKRKEFGFKDPWLFVVGFSRCTGKIQWKVLDLRNLTWHEIPAMPCRDKVCPHGFRSVSMPREGTMFVCGGMVSDSDCPLDLVLKYDMVKNHWTVTNKMITARSFFASGVIDGMIYAAGGNAADLYE-LDCAEVLNPLDGNWRPVSNMVAHMASYDTAVLNGKLLVT 260          
BLAST of FC878158 vs. ExPASy Swiss-Prot
Match: FBK22_ARATH (F-box/kelch-repeat protein At1g55270 OS=Arabidopsis thaliana GN=At1g55270 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.110e-20
Identity = 61/208 (29.33%), Postives = 91/208 (43.75%), Query Frame = 2
Query:  224 PLIPGLPDEIGELCLLHVPYPYQALVRSVSYSWNKAITDPGFALCKKSLSLSLPYLFIFSFHKPTARIQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYV 847
            PL+PGLPD++   CL+ VP      +R V   W +  +   F   +K L +S  ++++F   +   +I W   DP S  W  LPP+P   +     F C  L   G    L G +      M+  I Y A TN+W  A  ML  R FF    +N  +   GG    I  T+ + E YDP  + W+  A +   +      V   K ++
Sbjct:   77 PLLPGLPDDLAVACLIRVPRAEHRKLRLVCKRWYRLASGNFFYSQRKLLGMSEEWVYVFKRDRD-GKISWNTFDPISQLWQPLPPVPREYSEAV-GFGCAVL--SGCHLYLFGGKDPLRGSMRRVIFYNARTNKWHRAPDMLRKRHFFGCCVINNCLYVAGGECEGIQRTLRSAEVYDPNKNRWSFIADMSTAMVPLIGVVYDKKWFL 280          
BLAST of FC878158 vs. ExPASy Swiss-Prot
Match: FBK28_ARATH (F-box/kelch-repeat protein At1g67480 OS=Arabidopsis thaliana GN=At1g67480 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.852e-17
Identity = 59/210 (28.10%), Postives = 94/210 (44.76%), Query Frame = 2
Query:  224 PLIPGLPDEIGELCLLHVPYPYQALVRSVSYSWNKAITDPGFALCKKSLSLSLPYLFIFSFHKPTARIQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATT--NQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYV 847
            PLIPGLPD++ + CL  VP      + SV   W   +    F   ++   +   +L++ + +      +W+ +D    +   LPPMP P     +          GKL V+ G      + + S  +Y+  T  N W   + +   R  FA   VNG +  VGG G +  E++++ E YDPE+ TWT    LR       ++    K+YV
Sbjct:   38 PLIPGLPDDVAKQCLALVPRARFPSMGSVCKKWRFVVQSKEFITVRRLAGMLEEWLYVLTMNAGGKDNRWEVMDCLGQKLSSLPPMPGPAKTGFKVVVV-----DGKLLVIAGCCMINGSLVASADVYQYDTCLNSWSRLADLEVARYDFACAEVNGHVYVVGGHGVD-GESLSSAEVYDPETCTWTFIESLRRPRWGCFASAFNGKLYV 241          
BLAST of FC878158 vs. ExPASy Swiss-Prot
Match: FBK5_ARATH (F-box/kelch-repeat protein At1g16250 OS=Arabidopsis thaliana GN=At1g16250 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.084e-16
Identity = 55/197 (27.92%), Postives = 93/197 (47.21%), Query Frame = 2
Query:  221 QPLIPGLPDEIGELCLLHVPYPYQALVRSVSYSWNKAITDPGFALCKKSLSLSLPYLFIFSFHKPTARIQWQALDPRSGRWFVLPPMPCPKAVCP----QAFACTSLPRQGKLFVLGGMRSDTET--PMQSTIMYRATTN------QWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTW 775
            Q +IPGLPD++   C+  + + Y  ++  VS  W   +    ++  K     S  +LF+ +     ++ QW A DP + RW    P+P  +AV        FAC  +     L V+GG  + + +  P Q  ++ +          QW++ + M TPR+ FA  +V+GK+   GG     +  + + E YDP +D W
Sbjct:    6 QSIIPGLPDDLALRCIAKLSHGYHGVLECVSRGWRDLVRGADYSCYKARNGWSGSWLFVLT---ERSKNQWVAYDPEADRWH---PLPRTRAVQDGWHHSGFACVCV--SNCLLVIGGCYAPSVSSFPHQKPVVTKDVMRFDPFKKQWKMVASMRTPRTHFACTSVSGKVYVAGGRNLTHSRGIPSAEVYDPVADRW 194          
BLAST of FC878158 vs. ExPASy Swiss-Prot
Match: SKI30_ARATH (F-box/kelch-repeat protein SKIP30 OS=Arabidopsis thaliana GN=SKIP30 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 4.119e-16
Identity = 62/199 (31.16%), Postives = 84/199 (42.21%), Query Frame = 2
Query:  227 LIPGLPDEIGELCLLHVPYPYQALVRSVSYSWNKAITDPGFALCKKSLSLSLPYLFIFSFHKPTARIQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPM----------QSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKL 793
            L+ G+P+ +   CL HVP      +  VS SW  AI        +K L  S   L + +F        WQ   P   RW  LP +P          A T+    G LFVLGG  SD  +P+               Y     QW   + ML PR+ FA   + GKI+  GG      ++++  E YDPE+D WT+   L
Sbjct:   11 LLDGIPEAVALRCLAHVPLHLHPNLELVSRSWRAAIRSHELFRVRKELRSSEHLLCVCAFDPENI---WQVYSPNCDRWLTLPLLPSRIRHLAHFGAVTT---AGMLFVLGG-GSDAVSPVTGDHDGTFATDQVWSYDFVQRQWTPRASMLVPRAMFACCVLQGKIVVAGGF-TTCRKSISGAEMYDPENDVWTSIPDL 201          
BLAST of FC878158 vs. ExPASy Swiss-Prot
Match: FK125_ARATH (F-box/kelch-repeat protein OR23 OS=Arabidopsis thaliana GN=OR23 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.495e-13
Identity = 62/209 (29.67%), Postives = 91/209 (43.54%), Query Frame = 2
Query:  227 LIPGLPDEIGELCLLHVPYPYQALVRSVSYSWNKAITDPGFALCKKSLSLS----LPYLFIFSFHKPTARIQWQALDPRSGRWFVLPPMPC-PKAVCPQAFACTSLPRQGKLFVLGGMRSDTET-------PMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGK----IMAVGGTGANI----NETMTAVECYDPESDTWTTAAKL 793
            LIPGL +++G L L  VPYP+ + ++S   SW   ++       + S   S    L +L       P+    +   DP +  W  LP MPC P       F   +L     ++VLGG   DT +       P  S   Y    + W+  SPM++PR  FA   + G     I+A GG+   +       M++VE YD E D W    +L
Sbjct:   38 LIPGLSNDVGRLILSFVPYPHISRIKSTCKSWYAFLSSKTLISLRHSRDNSNTNNLSHLLCIFPQDPSISPPF-LFDPVTLSWRSLPLMPCNPHVYGLCNFVAVALGPY--VYVLGGSAFDTRSYPLDVPLPTSSVFRYSFVKSVWERLSPMMSPRGSFACAAMPGSCGRIIVAGGGSRHTLFGAAGSRMSSVEMYDVEKDEWRVMNEL 243          
BLAST of FC878158 vs. ExPASy Swiss-Prot
Match: SKIP4_ARATH (F-box/kelch-repeat protein SKIP4 OS=Arabidopsis thaliana GN=SKIP4 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.050e-11
Identity = 58/210 (27.62%), Postives = 91/210 (43.33%), Query Frame = 2
Query:  227 LIPGLPDEIGELCLLHVPYPYQALVRSVSYSWNKAITDPGFALCKKSLSLSLPYLFIFSFHKPTARIQWQALDPRSGR--WFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQW-QLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYV 847
            LI G+PD+I + CL  VP  Y   ++ VS  W   +        +   +L+  +++       +  +    L+P S R  W  +   P         FA        +LFVLGG     E        Y A  N W  +  P+ T R +FA   ++GKI+A+GG G N N   T  + YDP + T  + + + +     DS VM  ++Y+
Sbjct:   21 LISGVPDDISKSCLARVPREYHMAMKCVSRRWRDFVCSDEMCDYRNEFNLAESWIYALC-RDISGGVFLHMLNPFSSRRSWKRINDYPYIPMREGMGFAVLGK----RLFVLGGC-GWLEDATDEIYCYDAAMNTWFDVVPPLSTKRCYFACETLDGKIIAIGGLGLNPNAKRT-WDIYDPLTRTCKSCSDVNIVPEMEDSFVMDGRIYI 223          
BLAST of FC878158 vs. ExPASy Swiss-Prot
Match: FBK16_ARATH (Putative F-box/kelch-repeat protein At1g27420 OS=Arabidopsis thaliana GN=At1g27420 PE=4 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.210e-11
Identity = 49/218 (22.48%), Postives = 88/218 (40.37%), Query Frame = 2
Query:  215 NTQPLIPGLPDEIGELCLLHVPYPYQALVRSVSYSWNKAITDPGFALCKKSLSLSLPYLFIFSFHKPTARIQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLG--------GMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMY 844
            ++ P+IPGL D++ ELC+  +P     +   V   W   +    FA  +K       +L +    +    + W+  D    +   +PP+P P     + F    L   GK+   G        G+ S T +       +    N W+  + M  PR  FA   VNG +  + G   +   +++  E Y+P+++ W+        + R  +    SK+Y
Sbjct:    6 SSSPIIPGLTDDVAELCVSKIPRSSFQITSQVCRRWRSFLRSQHFAAVRKLTGTVEEFLCVLMESECGRDVYWEVFDASGNKLGQIPPVPGP---LKRGFGVAVLD-GGKIVFFGGYTEVEGSGINSTTVSASADVYEFDPANNSWRKLAGMNIPRYNFAFAEVNGLLYVIRGYSTD-TYSLSNAEVYNPKTNQWSLMHCPNRPVWRGFAFAFSSKLY 218          
The following BLAST results are available for this feature:
BLAST of FC878158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
AFR_ARATH9.342e-6961.03F-box protein AFR OS=Arabidopsis thaliana GN=AFR P... [more]
FBK17_ARATH4.522e-3938.39F-box/kelch-repeat protein At1g30090 OS=Arabidopsi... [more]
FBK22_ARATH2.110e-2029.33F-box/kelch-repeat protein At1g55270 OS=Arabidopsi... [more]
FBK28_ARATH2.852e-1728.10F-box/kelch-repeat protein At1g67480 OS=Arabidopsi... [more]
FBK5_ARATH1.084e-1627.92F-box/kelch-repeat protein At1g16250 OS=Arabidopsi... [more]
SKI30_ARATH4.119e-1631.16F-box/kelch-repeat protein SKIP30 OS=Arabidopsis t... [more]
FK125_ARATH9.495e-1329.67F-box/kelch-repeat protein OR23 OS=Arabidopsis tha... [more]
SKIP4_ARATH1.050e-1127.62F-box/kelch-repeat protein SKIP4 OS=Arabidopsis th... [more]
FBK16_ARATH5.210e-1122.48Putative F-box/kelch-repeat protein At1g27420 OS=A... [more]
back to top
Properties
Property NameValue
Genbank descriptionIC0AAA64AE10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA64AE10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878158 ID=FC878158; Name=FC878158; organism=Citrus clementina; type=EST; length=852bp
CAAATTCCTACCCAATTCAAAGGTGTAAAAAAGAATAAATTAAATAAAAT
CACAGCGCCCAATCAGACAGCGTCAAACTCCGGTGACCGGCAGCATCTGT
TCGTCGCGTAGCTGGAGTTACGTCAGCCGCACCCGACTCCGTCTCTCAAG
CATGGAGGTTTCTCAATCGTCTACTTCGTCGTCGTCGAGCCAAGAAACTG
AAATTTCTGGAAGGAATACTCAGCCACTGATTCCGGGATTACCCGACGAG
ATCGGGGAGCTATGTCTGCTTCATGTTCCGTATCCGTACCAAGCTTTGGT
ACGTTCAGTTTCGTATTCATGGAACAAAGCAATTACAGACCCTGGCTTCG
CTCTCTGCAAGAAGAGCCTGTCACTTTCTTTGCCTTACCTTTTCATTTTT
TCTTTTCATAAACCTACGGCCAGGATCCAATGGCAAGCCTTGGACCCACG
ATCTGGCCGTTGGTTTGTTTTGCCTCCTATGCCATGCCCTAAGGCTGTGT
GCCCGCAAGCCTTTGCATGTACATCACTTCCACGGCAAGGCAAATTATTT
GTTTTGGGCGGGATGCGGTCGGACACAGAGACTCCTATGCAGTCTACGAT
CATGTACCGTGCAACAACCAATCAATGGCAGTTAGCATCACCAATGTTAA
CACCGAGGTCATTTTTCGCCTCCGGGAATGTTAACGGTAAGATCATGGCC
GTTGGTGGAACCGGGGCCAACATCAACGAGACAATGACAGCCGTCGAGTG
TTACGACCCGGAGAGCGACACGTGGACGACGGCTGCCAAGTTGCGAATGG
GGTTGGCTAGGTACGACTCAGCTGTGATGGGGAGCAAGATGTATGTGACT
GA
back to top