FC878163
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Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC878163 vs. ExPASy Swiss-Prot
Match: R13A4_ARATH (60S ribosomal protein L13a-4 OS=Arabidopsis thaliana GN=RPL13AD PE=2 SV=1) HSP 1 Score: 229.565 bits (584), Expect = 5.114e-71 Identity = 111/130 (85.38%), Postives = 115/130 (88.46%), Query Frame = 1
Query: 46 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALK 435
MVSGSGIC+KRVVVDARHHMLGRLASI AKELLNGQKVV VRCEEIC+SGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAP+KIFWRTVRGMIPHKT YEGVP PYDK+KRMVIPDALK
Sbjct: 1 MVSGSGICSKRVVVDARHHMLGRLASITAKELLNGQKVVIVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVYEGVPTPYDKIKRMVIPDALK 130 HSP 2 Score: 60.4622 bits (145), Expect = 5.114e-71 Identity = 25/31 (80.65%), Postives = 30/31 (96.77%), Query Frame = 3
Query: 522 VRVLRLQKGHKYCLLGRLASEVGWNYYDTIR 614
++VLRLQ GHKYCLLGRL+SEVGWN+YDTI+
Sbjct: 129 LKVLRLQAGHKYCLLGRLSSEVGWNHYDTIK 159
BLAST of FC878163 vs. ExPASy Swiss-Prot
Match: R13A1_ARATH (60S ribosomal protein L13a-1 OS=Arabidopsis thaliana GN=RPL13AA PE=2 SV=1) HSP 1 Score: 226.868 bits (577), Expect = 3.281e-70 Identity = 107/130 (82.31%), Postives = 115/130 (88.46%), Query Frame = 1
Query: 46 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALK 435
MVSGSGICAKRVVVDARHHMLGRLAS+VAK+LLNGQ +V VRCEEIC+SGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAP+KIFWRTVRGMIPHKT +EGVP PYDK+KRMV+PDALK
Sbjct: 1 MVSGSGICAKRVVVDARHHMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGANALARLKVFEGVPTPYDKIKRMVVPDALK 130 HSP 2 Score: 60.4622 bits (145), Expect = 3.281e-70 Identity = 25/31 (80.65%), Postives = 30/31 (96.77%), Query Frame = 3
Query: 522 VRVLRLQKGHKYCLLGRLASEVGWNYYDTIR 614
++VLRLQ GHKYCLLGRL+SEVGWN+YDTI+
Sbjct: 129 LKVLRLQAGHKYCLLGRLSSEVGWNHYDTIK 159
BLAST of FC878163 vs. ExPASy Swiss-Prot
Match: R13A2_ARATH (60S ribosomal protein L13a-2 OS=Arabidopsis thaliana GN=RPL13AB PE=1 SV=1) HSP 1 Score: 225.713 bits (574), Expect = 7.278e-70 Identity = 109/130 (83.85%), Postives = 114/130 (87.69%), Query Frame = 1
Query: 46 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALK 435
MVSGSGIC+KRVVVDARHHM GRLASI+AKELLNGQ VV VRCEEIC+SGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAP+KIFWRTVRGMIPHKT +EGVP PYDKVKRMVIPDALK
Sbjct: 1 MVSGSGICSKRVVVDARHHMCGRLASIIAKELLNGQSVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGVPPPYDKVKRMVIPDALK 130 HSP 2 Score: 60.4622 bits (145), Expect = 7.278e-70 Identity = 25/31 (80.65%), Postives = 30/31 (96.77%), Query Frame = 3
Query: 522 VRVLRLQKGHKYCLLGRLASEVGWNYYDTIR 614
++VLRLQ GHKYCLLGRL+SEVGWN+YDTI+
Sbjct: 129 LKVLRLQAGHKYCLLGRLSSEVGWNHYDTIK 159
BLAST of FC878163 vs. ExPASy Swiss-Prot
Match: R13A3_ARATH (60S ribosomal protein L13a-3 OS=Arabidopsis thaliana GN=RPL13AC PE=2 SV=1) HSP 1 Score: 223.016 bits (567), Expect = 3.580e-69 Identity = 107/130 (82.31%), Postives = 113/130 (86.92%), Query Frame = 1
Query: 46 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALK 435
MVSGSGICAKRVVVD RHHMLGRLAS AKELLNGQ+VV VRCEEIC+SGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAP+KIFWRTVRGMIPHKT +EG+P PYDK+KRMVIPDALK
Sbjct: 1 MVSGSGICAKRVVVDGRHHMLGRLASNTAKELLNGQEVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGIPPPYDKIKRMVIPDALK 130 HSP 2 Score: 60.8474 bits (146), Expect = 3.580e-69 Identity = 25/31 (80.65%), Postives = 30/31 (96.77%), Query Frame = 3
Query: 522 VRVLRLQKGHKYCLLGRLASEVGWNYYDTIR 614
++VLRLQ GHKYCLLGRL+SEVGWN+YDTI+
Sbjct: 129 LKVLRLQSGHKYCLLGRLSSEVGWNHYDTIK 159
BLAST of FC878163 vs. ExPASy Swiss-Prot
Match: RL13A_PICMA (60S ribosomal protein L13a OS=Picea mariana GN=RPL13A PE=2 SV=1) HSP 1 Score: 217.624 bits (553), Expect = 1.030e-65 Identity = 104/130 (80.00%), Postives = 113/130 (86.92%), Query Frame = 1
Query: 46 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALK 435
MVSGSGICAK VVVDARHHMLGRLASI+AKELL+GQ+VV VRCEEICMSGGLVRQKMKY+RFLRKRMNTKPSHGPIHFRAP++I WRT+RGMIPHKT +EGVP PYD+ KRMVIPDALK
Sbjct: 1 MVSGSGICAKEVVVDARHHMLGRLASILAKELLHGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPSRILWRTIRGMIPHKTKRGAAALATLRAFEGVPPPYDRKKRMVIPDALK 130 HSP 2 Score: 54.6842 bits (130), Expect = 1.030e-65 Identity = 22/30 (73.33%), Postives = 28/30 (93.33%), Query Frame = 3
Query: 522 VRVLRLQKGHKYCLLGRLASEVGWNYYDTI 611
++VLRLQ GHKYCLLGRL+ EVGW+++DTI
Sbjct: 129 LKVLRLQPGHKYCLLGRLSKEVGWHHFDTI 158
BLAST of FC878163 vs. ExPASy Swiss-Prot
Match: RL13A_LUPLU (60S ribosomal protein L13a OS=Lupinus luteus GN=RPL13A PE=2 SV=1) HSP 1 Score: 207.994 bits (528), Expect = 2.284e-65 Identity = 104/130 (80.00%), Postives = 111/130 (85.38%), Query Frame = 1
Query: 46 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALK 435
MVSGSGI AKRVVVDARHHMLGRLASIVAKELLNGQKVV VR EEIC+SGGLVRQKMKY+RFLRKRMNTKPSHGPIH AP+KIFWRTVRGMIPHKT YEG+P P+DK KR+V+PDALK
Sbjct: 1 MVSGSGIAAKRVVVDARHHMLGRLASIVAKELLNGQKVVIVRSEEICISGGLVRQKMKYLRFLRKRMNTKPSHGPIHC-APSKIFWRTVRGMIPHKTKRGEHALARLKVYEGIPPPFDKQKRLVVPDALK 129 HSP 2 Score: 63.1586 bits (152), Expect = 2.284e-65 Identity = 26/31 (83.87%), Postives = 31/31 (100.00%), Query Frame = 3
Query: 522 VRVLRLQKGHKYCLLGRLASEVGWNYYDTIR 614
++VLRLQKGHKYCLLG+L+SEVGWNYYDTI+
Sbjct: 128 LKVLRLQKGHKYCLLGQLSSEVGWNYYDTIK 158
BLAST of FC878163 vs. ExPASy Swiss-Prot
Match: RL13A_CYAPA (60S ribosomal protein L13a OS=Cyanophora paradoxa PE=2 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 2.498e-45 Identity = 77/121 (63.64%), Postives = 91/121 (75.21%), Query Frame = 1
Query: 73 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALK 435
K VVVD R H+LGRLA+ +AKELLNGQ+VVAVR EEI +SG L R K+K+ FL+KRMNT P GP HFR+PA+I WRT+RGMIPHKT +EGVP PYDK+KRMVIP AL+
Sbjct: 4 KVVVVDCRGHLLGRLAATLAKELLNGQRVVAVRTEEINISGSLFRNKLKFHAFLKKRMNTNPRRGPFHFRSPARILWRTIRGMIPHKTPRGAAALERLKAFEGVPPPYDKMKRMVIPQALR 124 HSP 2 Score: 45.0542 bits (105), Expect = 2.498e-45 Identity = 18/30 (60.00%), Postives = 25/30 (83.33%), Query Frame = 3
Query: 522 VRVLRLQKGHKYCLLGRLASEVGWNYYDTI 611
+RVLRL+ G K+C+LGRLA+EVGW + D +
Sbjct: 123 LRVLRLKPGRKFCVLGRLATEVGWRHSDLV 152
BLAST of FC878163 vs. ExPASy Swiss-Prot
Match: RL13A_PONAB (60S ribosomal protein L13a OS=Pongo abelii GN=RPL13A PE=2 SV=3) HSP 1 Score: 156.762 bits (395), Expect = 2.028e-41 Identity = 75/123 (60.98%), Postives = 92/123 (74.80%), Query Frame = 1
Query: 79 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALK*VLL 447
+V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG R K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT ++G+P PYDK KRMV+P ALK V L
Sbjct: 7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTSPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRL 129 HSP 2 Score: 34.2686 bits (77), Expect = 2.028e-41 Identity = 14/26 (53.85%), Postives = 19/26 (73.08%), Query Frame = 3
Query: 522 VRVLRLQKGHKYCLLGRLASEVGWNY 599
++V+RL+ K+ LGRLA EVGW Y
Sbjct: 124 LKVVRLKPTRKFAYLGRLAHEVGWKY 149
BLAST of FC878163 vs. ExPASy Swiss-Prot
Match: RL13A_MACFA (60S ribosomal protein L13a OS=Macaca fascicularis GN=RPL13A PE=2 SV=3) HSP 1 Score: 156.762 bits (395), Expect = 2.028e-41 Identity = 75/123 (60.98%), Postives = 92/123 (74.80%), Query Frame = 1
Query: 79 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALK*VLL 447
+V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG R K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT ++G+P PYDK KRMV+P ALK V L
Sbjct: 7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRL 129 HSP 2 Score: 34.2686 bits (77), Expect = 2.028e-41 Identity = 14/26 (53.85%), Postives = 19/26 (73.08%), Query Frame = 3
Query: 522 VRVLRLQKGHKYCLLGRLASEVGWNY 599
++V+RL+ K+ LGRLA EVGW Y
Sbjct: 124 LKVVRLKPTRKFAYLGRLAHEVGWKY 149
BLAST of FC878163 vs. ExPASy Swiss-Prot
Match: RL13A_HUMAN (60S ribosomal protein L13a OS=Homo sapiens GN=RPL13A PE=1 SV=2) HSP 1 Score: 156.762 bits (395), Expect = 2.028e-41 Identity = 75/123 (60.98%), Postives = 92/123 (74.80%), Query Frame = 1
Query: 79 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALK*VLL 447
+V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG R K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT ++G+P PYDK KRMV+P ALK V L
Sbjct: 7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRL 129 HSP 2 Score: 34.2686 bits (77), Expect = 2.028e-41 Identity = 14/26 (53.85%), Postives = 19/26 (73.08%), Query Frame = 3
Query: 522 VRVLRLQKGHKYCLLGRLASEVGWNY 599
++V+RL+ K+ LGRLA EVGW Y
Sbjct: 124 LKVVRLKPTRKFAYLGRLAHEVGWKY 149 The following BLAST results are available for this feature:
BLAST of FC878163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 29
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878163 ID=FC878163; Name=FC878163; organism=Citrus clementina; type=EST; length=763bpback to top |