FC878166

Overview
NameFC878166
Unique NameFC878166
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length913
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10500 contig Ccv1_Contig10500:1..913. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878166 vs. ExPASy Swiss-Prot
Match: RIK_ARATH (Protein RIK OS=Arabidopsis thaliana GN=RIK PE=1 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 3.285e-54
Identity = 125/245 (51.02%), Postives = 155/245 (63.27%), Query Frame = 2
Query:  137 MTEDSHHTFSSDDSAISTDGSSQTRQRKKRKWDQPAESLLNFPLASFGISLXXXXXXXXXXXXXXXXXXXXXXXXSGATXXXXXXXXXXXXKFNQPKVQDELIIAREIVINDSESSVRYKLTKRQTQEEIQKCTGAVVITRGKYRPPNAPPDGEKPLYLHISAGA--HLKETAERILAVDHAAAMVEEMLKQ---GHAGFPTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGTNVRFFFHL 856
            MTED+         + +T+ +S+TRQR+KRKWD+PAE L+   +A                              S +             K NQPK+QDE+IIAREIVIND+E+S+R++LTKR TQE+IQ+ TGAVVITRGKYRPPNAPPDGEKPLYLHISA A   LKET ERILAVD AAAM+EEM+KQ      G   LQT     V+ +ST V+LGF+AD S N+AARIRG N ++  H+
Sbjct:    1 MTEDNDEARVPLSDSSTTNDASRTRQRRKRKWDKPAEQLVAAGVA----------------FPQLLPLGNTMNVPSMSPLLQTLSVPLAVPKVNQPKIQDEVIIAREIVINDAEASLRHRLTKRSTQEDIQRSTGAVVITRGKYRPPNAPPDGEKPLYLHISAAAQLQLKETTERILAVDRAAAMIEEMMKQKSISQIGSVGLQT-----VKMLSTCVYLGFEADPSSNVAARIRGPNDQYINHI 224          
BLAST of FC878166 vs. ExPASy Swiss-Prot
Match: RIK_MAIZE (Protein RIK OS=Zea mays PE=1 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.993e-51
Identity = 121/257 (47.08%), Postives = 148/257 (57.59%), Query Frame = 2
Query:  137 MTEDSHHTFSSDDSAISTDGSSQTRQRKKRKWDQPAESLLN----------FPLASFGI--SLXXXXXXXXXXXXXXXXXXXXXXXXSGATXXXXXXXXXXXXKFNQPKVQDELIIAREIVINDSESSVRYKLTKRQTQEEIQKCTGAVVITRGKYRPPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQGHAG---FPTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGTNVRFFFHLFQ 862
            MTED  H  + + +A       Q+ +RKKRKWDQPAE L++           P+ +FG    +                                        K +Q K+ DE +IAREIVIND++ SVRYKLTKRQTQEEIQKCT  V+ITRGKY PPN  PDGEKPLYLHISAG+ LK+TAERI AVD AA+M+EE+LKQG           +  G  V+  S SVFLGFDAD SLNI ARIRG N ++  H+ +
Sbjct:    1 MTEDRAHKVADEPAA----SGRQSPERKKRKWDQPAEDLVSAAVTAAAVSGMPVMNFGALPGVVLPGVTAYGAATLPSVVPVPYSLPPHIAPSVLQNAAAAAQKLSQAKIPDE-VIAREIVINDADPSVRYKLTKRQTQEEIQKCTNTVIITRGKYHPPNLLPDGEKPLYLHISAGSQLKDTAERIKAVDRAASMIEEILKQGTTSESISVPFSSSTGQAVRPFSASVFLGFDADPSLNITARIRGPNDQYINHIMK 252          
The following BLAST results are available for this feature:
BLAST of FC878166 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RIK_ARATH3.285e-5451.02Protein RIK OS=Arabidopsis thaliana GN=RIK PE=1 SV... [more]
RIK_MAIZE1.993e-5147.08Protein RIK OS=Zea mays PE=1 SV=1[more]
back to top
Properties
Property NameValue
Genbank descriptionIC0AAA64AE12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA64AE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878166 ID=FC878166; Name=FC878166; organism=Citrus clementina; type=EST; length=913bp
AAACAAAACACCGTCAAGCGTGCGTCAAGTAACCACTAAAGCTCATCAAA
TTCATCAATTCAGGCTCCAGGGACTGGGAAGGACCGGATGATTAATTGAA
TTTTATTTTTATTTTACGGATCTAATTATCGACAGTATGACAGAAGACAG
TCATCATACGTTTTCGTCGGACGACTCCGCCATATCTACCGACGGCTCCT
CTCAAACACGGCAAAGGAAAAAGAGGAAGTGGGACCAGCCAGCGGAATCA
TTGCTTAATTTCCCTCTAGCCAGCTTTGGAATTTCCTTGCCTGGTGTGCC
AGTTGCCCCAGTTGTCCCTGCTCCTGCTGCAGCTGCTTTCTTCACAAATC
CACCGGTGGCTAGCGGTGCAACTGTTCCACCGGTTGTGCTCCAGGGGCCT
CTGCCACCCAAGTTCAATCAACCTAAGGTCCAAGATGAGTTAATAATTGC
ACGGGAGATTGTTATAAATGATTCGGAGTCTTCTGTTCGCTACAAACTAA
CTAAACGTCAAACACAGGAAGAGATTCAAAAATGCACTGGTGCTGTGGTA
ATAACTAGGGGTAAATATCGTCCGCCAAATGCCCCGCCCGATGGTGAAAA
GCCTCTATATCTTCACATATCTGCAGGGGCTCATTTAAAAGAGACAGCGG
AACGAATTTTAGCAGTTGATCATGCAGCTGCCATGGTTGAAGAAATGCTG
AAACAGGGTCATGCAGGTTTTCCCACTTTGCAAACAGTTATGGGCAATGG
GGTCCAGGCAATGAGTACATCTGTGTTTTTGGGTTTTGATGCTGACGCAT
CTCTGAACATTGCTGCTCGCATTCGTGGAACAAATGTGAGATTTTTCTTT
CATCTATTTCAATCTCCCATATGGCTATGATTTTAAGGAATTTGTCAAAA
TGGTTTTGATTTT
back to top