FC878167

Overview
NameFC878167
Unique NameFC878167
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length925
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878167_ssr3 microsatellite FC878167_ssr3:3..38. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11252 contig Ccv1_Contig11252:114..1038. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878167 vs. ExPASy Swiss-Prot
Match: TT12_ARATH (Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.132e-28
Identity = 73/230 (31.74%), Postives = 119/230 (51.74%), Query Frame = 2
Query:  182 ESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILLGMASALETLCGQAFGAKQYHMLGIYLQRSWIVLTICAXXXXXXXXXXXXXXVALGQEENIAEVAGTISFMLIPVLFAFIISFTCQMYLQAQSRNMIISYLAACXXXXXXXXXXXXTMKLNFGLPGALGSTILAYW-IPNLGQLLFVICGGCPQTWKGFSFAAFKDLWPVVKLS 868
            ESK LW ++  +I     ++ L+ V+  F GH+G+ QLA  S+    +   A GI+LGMASA++T+CGQA+GA+QY  +GI  QR+ ++    A                +GQ   IA      +  +IP ++AF ++   Q +LQAQ+    ++Y++              T  L+FGL GA      ++W +  +  +  ++   C +TW GFS  AF+ +WP  KL+
Sbjct:   51 ESKLLWTLSGASIVVSVLNYMLSFVTVMFTGHLGSLQLAGASIATVGIQGLAYGIMLGMASAVQTVCGQAYGARQYSSMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIAHEGQIFARGMIPQIYAFALACPMQRFLQAQNIVNPLAYMSLGVFLLHTLLTWLVTNVLDFGLLGAALILSFSWWLLVAVNGMYILMSPNCKETWTGFSTRAFRGIWPYFKLT 280          
BLAST of FC878167 vs. ExPASy Swiss-Prot
Match: YJ2D_SCHPO (Uncharacterized transporter C4B3.13 OS=Schizosaccharomyces pombe GN=SPCC4B3.13 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.277e-13
Identity = 67/268 (25.00%), Postives = 111/268 (41.42%), Query Frame = 2
Query:   89 RMVGEIKEKLLGNTEEND-----VDGQVKFRQKLWVESKKLWI-VAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILLGMASALETLCGQAFGAKQYHMLGIYLQRSWIVLTICAXXXXXXXXXXXXXXVALGQEENIAEVAGTISFMLIPVLFAFIISFTCQMYLQAQSRNMIISYLAACXXXXXXXXXXXXTMK--LNFGLPGALGSTILAYWIPNLGQLLFVICGGCPQTWKGFSFAAFKDLWPVVKLS 868
            R   ++    L  TEEN+     +  Q  F  K W +   L I  A P + T    +G  V +   +GH+G T+LAA SL        A  I  G+ SAL+T+  Q+FG+  Y M+G++LQR   +L +                + L Q+      A     +++    A+ +    + +LQ Q     ++Y+ A                  + FG  GA  +  L  W      +++++     Q W GFS  A K+  P+ +L+
Sbjct:   59 RPATDVSYGALEETEENESIASGLSVQEDFNSKAWWKELTLLIKFATPVVLTSLLQYGEVVTTVFSLGHLGKTELAAASLSNMTATITAFAIYQGIVSALDTVGTQSFGSGNYEMVGLHLQRILAILLLIQFPIFLIWWKIEGILLFLRQDPLTCMFAAKYMRVMMLASPAYALFEALKRFLQVQGIFHPVTYILAIVVPINIFLNYLFVWSPWVGFGFLGAPVAVALTLWSACAVLIIYIMKVNGRQAWGGFSREALKNWGPLCRLA 326          
BLAST of FC878167 vs. ExPASy Swiss-Prot
Match: YL47_SCHPO (Uncharacterized transporter C323.07c OS=Schizosaccharomyces pombe GN=SPAC323.07c PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.668e-13
Identity = 55/202 (27.23%), Postives = 87/202 (43.07%), Query Frame = 2
Query:  269 IGHIGATQLAAYSLVFTVLLRFANGILLGMASALETLCGQAFGAKQYHMLGIYLQRSWIVLTICAXXXXXXXXXXXXXXVALGQEENIAEVAGTISFMLIPVLFAFIISFTCQMYLQAQSRNMIISYLA--ACXXXXXXXXXXXXTMKLNFGLPGALGSTILAYWIPNLGQLLFVICGGCPQTWKGFSFAAFKDLWPVVKLS 868
            +GH+G   LAA SL        A  I  G+ S+L+TL  QAFGA + + + IYLQR  ++L +                + L Q+  +A + G    + I     + +    + YLQAQ     I+Y+   A                + FG  GA  +    +W  ++  +L++     P  W GFS  A K+L P++  S
Sbjct:  119 LGHLGKEYLAASSLSTMTAAISAFSIFQGVISSLDTLATQAFGANKPYNVAIYLQRCLLILAVLHIPVALIWLNLEHILIFLHQDPMVAHLCGRYMRVFILAAPGYAVFEALKRYLQAQGIFTPITYVLCFAAPLNILLNYLLVWHPTIGFGFLGAPVAVATTFWFQSICLILYICFSSTPIPWPGFSRQALKNLSPMLHFS 320          
BLAST of FC878167 vs. ExPASy Swiss-Prot
Match: S47A1_XENTR (Multidrug and toxin extrusion protein 1 OS=Xenopus tropicalis GN=slc47a1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.846e-13
Identity = 54/237 (22.78%), Postives = 106/237 (44.73%), Query Frame = 2
Query:  170 KLWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILLGMASALETLCGQAFGAKQYHMLGIYLQRSWIVLTICAXXXXXXXXXXXXXXVALGQEENIAEVAGTISFMLIPVLFAFIISFTCQMYLQAQS---RNMIISYLAACXXXXXXXXXXXXTMKLNFGLPGALGSTILAYWIPNLGQLLFVICGGC-PQTWKGFSFAAFKDLWPVVKLS 868
            ++W E+++L  +AAPA  ++   F +++VS  F GH+G  +L A SL  T++      +  G+A A +TL  Q FG     ++GI LQR  ++L +                +   Q+  ++++      + +P L A  +      YLQ Q      ++  ++A                 L  G+ G+  +  ++ +I  +   L+++       TW G+S A F++    ++L+
Sbjct:   44 EVWQEAQQLLALAAPAFLSQLMIFLISIVSSIFCGHLGKVELDAVSLAITIINITGVAVGTGLAGACDTLISQTFGGSNLKLVGIILQRGILILLLFCFPCWALLINTESILLLFRQDPEVSKLTQIYVLIFLPALPAAFLYQLLAKYLQNQGIIYPQVLTGFIA---NIFNALFNYILLYVLGLGVMGSACANTVSQFIQMILLFLYIVWRRLYADTWGGWSQACFEEWGAFIRLA 277          
BLAST of FC878167 vs. ExPASy Swiss-Prot
Match: S47A2_MOUSE (Multidrug and toxin extrusion protein 2 OS=Mus musculus GN=Slc47a2 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.367e-12
Identity = 43/148 (29.05%), Postives = 71/148 (47.97%), Query Frame = 2
Query:  182 ESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILLGMASALETLCGQAFGAKQYHMLGIYLQRSWIVLTICAXXXXXXXXXXXXXXVALGQEENIAEVAGTISFMLIPVLFAFIISFTCQMYLQAQ 625
            E+  L  +A P    +   F +++VS  F GH+G  +L A +L  +V+      +  G+ASA +TL  Q+FG K    +G+ LQR  ++L +C               + L Q+ ++A +A     + IP L A  +      YLQ+Q
Sbjct:   43 EAAALVALAGPVFLAQLMIFLISIVSSIFCGHLGKVELDAVTLAVSVVNVTGISVGTGLASACDTLMSQSFGGKNLKRVGVILQRGILILLLCCFPCWAIFLNTERLLLLLRQDPDVARLAQVYVMICIPALPAAFLFQLQTRYLQSQ 190          
BLAST of FC878167 vs. ExPASy Swiss-Prot
Match: S47A2_PONAB (Multidrug and toxin extrusion protein 2 OS=Pongo abelii GN=SLC47A2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.934e-11
Identity = 51/237 (21.52%), Postives = 97/237 (40.93%), Query Frame = 2
Query:  161 FRQKLWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILLGMASALETLCGQAFGAKQYHMLGIYLQRSWIVLTICAXXXXXXXXXXXXXXVALGQEENIAEVAGTISFMLIPVLFAFIISFTCQMYLQAQSRNMIISYLAACXXXXXXXXXXXXTMKLNFGLPGALGSTILAYWIPNLGQLLFVICGGCP-QTWKGFSFAAFKDLWPVVKLS 868
            F  ++W     L+ ++ P    +  +F + +VS  F GH+G  +LA+ +L    +      + +G++SA +TL  Q+FG+     +G+ LQR  +VL +C               +   Q+  ++ +      + IP L    +      YLQ Q                           LN G+ G+  + I++ +   +  LL+++      +TW G+S    +D  P   L+
Sbjct:   27 FGTEMWT----LFALSGPLFLFQVLTFMIYIVSTVFCGHLGKVELASVTLAVAFVNVCGVSVGVGLSSACDTLMSQSFGSPNKKHVGVILQRGALVLLLCCLPCWALFLNTQHILLLFRQDPEVSRLTQDYVMIFIPGLPVIFLYNLLAKYLQNQKITWPQVLSGVVGNCVNGVANYALVSVLNLGVRGSAYANIISQFAQTVFLLLYIVLKKLHLETWAGWSSQCLQDWGPFFSLA 259          
BLAST of FC878167 vs. ExPASy Swiss-Prot
Match: S47A2_RABIT (Multidrug and toxin extrusion protein 2 OS=Oryctolagus cuniculus GN=SLC47A2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.750e-11
Identity = 49/232 (21.12%), Postives = 96/232 (41.38%), Query Frame = 2
Query:  176 WVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILLGMASALETLCGQAFGAKQYHMLGIYLQRSWIVLTICAXXXXXXXXXXXXXXVALGQEENIAEVAGTISFMLIPVLFAFIISFTCQMYLQAQSRNMIISYLAACXXXXXXXXXXXXTMKLNFGLPGALGSTILAYWIPNLGQLLFVICGGCP-QTWKGFSFAAFKDLWPVVKLS 868
            W E++ L++++ P    +  +F   VV   F GH+G  +LA+ +L    +      +  G++SA +TL  Q+FG+     +G+ LQR  ++L +C               +   Q+  ++ +    + + IP L A  +      YLQ Q                           LN G+ G+  +  ++ ++      L ++      +TW+G+S    +D  P + L+
Sbjct:   57 WDEARALFVLSGPLFLFQVLNFLTYVVGTVFCGHLGKVELASVTLGVAFVNVCGVSVGAGLSSACDTLMSQSFGSPNKKHVGVILQRGSLILLLCCLPCWALFLNTQHILLLFRQDPAVSRLTQDYAMIFIPGLPAIFLYSLLAKYLQNQGIVWPQVLSGVVGNCVNGVANYALVSVLNLGVRGSAYANTISQFVQAAFLFLHIVLKKLHLETWEGWSSQCLRDWGPFLSLA 288          
The following BLAST results are available for this feature:
BLAST of FC878167 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TT12_ARATH3.132e-2831.74Protein TRANSPARENT TESTA 12 OS=Arabidopsis thalia... [more]
YJ2D_SCHPO1.277e-1325.00Uncharacterized transporter C4B3.13 OS=Schizosacch... [more]
YL47_SCHPO1.668e-1327.23Uncharacterized transporter C323.07c OS=Schizosacc... [more]
S47A1_XENTR2.846e-1322.78Multidrug and toxin extrusion protein 1 OS=Xenopus... [more]
S47A2_MOUSE5.367e-1229.05Multidrug and toxin extrusion protein 2 OS=Mus mus... [more]
S47A2_PONAB5.934e-1121.52Multidrug and toxin extrusion protein 2 OS=Pongo a... [more]
S47A2_RABIT7.750e-1121.12Multidrug and toxin extrusion protein 2 OS=Oryctol... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA83DG04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA83DG04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878167 ID=FC878167; Name=FC878167; organism=Citrus clementina; type=EST; length=925bp
CTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTGCTAGCTCTC
ATCTGTCACTTGAAAGAAAAGCTTTTTTTCTGGAGGTGAGAATGGTGGGA
GAGATCAAAGAGAAGCTATTAGGAAACACGGAGGAAAATGATGTTGATGG
GCAAGTGAAATTCAGGCAAAAGCTGTGGGTGGAATCCAAAAAGTTATGGA
TTGTAGCAGCTCCCGCTATTTTCACAAGATTTTCTTCATTTGGGCTCAAC
GTAGTTAGTCAGGCATTTATTGGGCACATTGGCGCGACCCAACTAGCTGC
CTACTCACTTGTGTTTACTGTTCTCTTGAGGTTTGCAAATGGCATCCTGT
TGGGCATGGCTAGTGCATTAGAGACGCTCTGTGGGCAAGCTTTTGGGGCG
AAACAATACCACATGCTAGGAATATATCTTCAAAGATCATGGATAGTCTT
AACCATTTGTGCTATCCTTCTCTTACCTCTGTTCTTCTTCACTACACCAA
TTTTGGTGGCTTTGGGCCAAGAAGAAAATATTGCTGAAGTGGCAGGAACT
ATTTCTTTCATGCTAATCCCTGTGTTGTTCGCCTTCATCATATCCTTTAC
CTGCCAAATGTACCTACAAGCCCAGAGCAGAAACATGATTATCTCCTACT
TGGCGGCATGTTCATTTTTGCTTCATCTCTTTCTTTCGTGGCTTTTTACC
ATGAAATTGAATTTTGGACTCCCTGGAGCATTGGGATCAACAATTCTGGC
ATACTGGATTCCAAACTTGGGTCAACTTCTGTTTGTTATATGTGGAGGGT
GCCCTCAAACATGGAAGGGTTTCTCATTTGCCGCTTTCAAGGATCTCTGG
CCTGTAGTAAAACTTTCTTGTCGTCTGGTGCCATGCTATGTCTCGAGCTC
TGGTACAACACAGTCTTGGTTCTTT
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