FC878171

Overview
NameFC878171
Unique NameFC878171
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length909
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7578 contig Ccv1_Contig7578:1..909. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878171 vs. ExPASy Swiss-Prot
Match: PSMD2_RAT (26S proteasome non-ATPase regulatory subunit 2 OS=Rattus norvegicus GN=Psmd2 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.855e-49
Identity = 99/180 (55.00%), Postives = 134/180 (74.44%), Query Frame = 1
Query:  373 QLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMLDSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAK-RQTDEASIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDFDLLVEHVDATNFKRTCLY 909
            +LE+ VER+ + D  L + ALE +R +IR+ST+SMTSVPKPLKFLRPHYG LK  YE M   + K + ADI+SVLA+TMS  GERE LKYRL+GS+ ++ SWGHEYVR+LAGE+A+E+ +    ++A  + L+ LV+EIV ++M HNAE EA DLLME+E  D+L + +D   + + CLY
Sbjct:   55 ELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMAPGENKCFAADIISVLAMTMS--GERECLKYRLVGSQEELASWGHEYVRHLAGEVAKEWQELDDAEKAQREPLLTLVKEIVPYNMAHNAEHEACDLLMEIEQVDMLEKDIDENAYSKVCLY 232          
BLAST of FC878171 vs. ExPASy Swiss-Prot
Match: PSMD2_HUMAN (26S proteasome non-ATPase regulatory subunit 2 OS=Homo sapiens GN=PSMD2 PE=1 SV=3)

HSP 1 Score: 196.438 bits (498), Expect = 1.855e-49
Identity = 98/180 (54.44%), Postives = 134/180 (74.44%), Query Frame = 1
Query:  373 QLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMLDSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAK-RQTDEASIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDFDLLVEHVDATNFKRTCLY 909
            +LE+ VER+ + D  L + ALE +R +IR+ST+SMTSVPKPLKFLRPHYG LK  YE M   + K++ ADI+SVLA+TMS  GERE LKYRL+GS+ ++ SWGHEYVR+LAGE+A+E+ +    ++   + L+ LV+EIV ++M HNAE EA DLLME+E  D+L + +D   + + CLY
Sbjct:   55 ELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMAPGENKRFAADIISVLAMTMS--GERECLKYRLVGSQEELASWGHEYVRHLAGEVAKEWQELDDAEKVQREPLLTLVKEIVPYNMAHNAEHEACDLLMEIEQVDMLEKDIDENAYAKVCLY 232          
BLAST of FC878171 vs. ExPASy Swiss-Prot
Match: PSMD2_BOVIN (26S proteasome non-ATPase regulatory subunit 2 OS=Bos taurus GN=PSMD2 PE=1 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 1.855e-49
Identity = 98/180 (54.44%), Postives = 134/180 (74.44%), Query Frame = 1
Query:  373 QLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMLDSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAK-RQTDEASIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDFDLLVEHVDATNFKRTCLY 909
            +LE+ VER+ + D  L + ALE +R +IR+ST+SMTSVPKPLKFLRPHYG LK  YE M   + K++ ADI+SVLA+TMS  GERE LKYRL+GS+ ++ SWGHEYVR+LAGE+A+E+ +    ++   + L+ LV+EIV ++M HNAE EA DLLME+E  D+L + +D   + + CLY
Sbjct:   55 ELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMAPGENKRFAADIISVLAMTMS--GERECLKYRLVGSQEELASWGHEYVRHLAGEVAKEWQELDDAEKTQREPLLTLVKEIVPYNMAHNAEHEACDLLMEIEQVDMLEKDIDENAYAKVCLY 232          
BLAST of FC878171 vs. ExPASy Swiss-Prot
Match: PSMD2_PONAB (26S proteasome non-ATPase regulatory subunit 2 OS=Pongo abelii GN=PSMD2 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.423e-49
Identity = 97/180 (53.89%), Postives = 134/180 (74.44%), Query Frame = 1
Query:  373 QLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMLDSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAK-RQTDEASIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDFDLLVEHVDATNFKRTCLY 909
            +LE+ VER+ + D  L + ALE +R +IR+ST+SMTSVPKPLKFLRPHYG LK  YE M   + K++ ADI+SVLA+TMS  GERE LKYRL+GS+ ++ SWGHEYVR+LAGE+A+E+ +    ++   + L+ LV+EI+ ++M HNAE EA DLLME+E  D+L + +D   + + CLY
Sbjct:   55 ELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMAPGENKRFAADIISVLAMTMS--GERECLKYRLVGSQEELASWGHEYVRHLAGEVAKEWQELDDAEKVQREPLLTLVKEIIPYNMAHNAEHEACDLLMEIEQVDMLEKDIDENAYAKVCLY 232          
BLAST of FC878171 vs. ExPASy Swiss-Prot
Match: PSMD2_MOUSE (26S proteasome non-ATPase regulatory subunit 2 OS=Mus musculus GN=Psmd2 PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.423e-49
Identity = 99/180 (55.00%), Postives = 134/180 (74.44%), Query Frame = 1
Query:  373 QLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMLDSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAK-RQTDEASIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDFDLLVEHVDATNFKRTCLY 909
            +LE+ VER+ + D  L + ALE +R +IR+ST+SMTSVPKPLKFLRPHYG LK  YE M   + K + ADI+SVLA+TMS  GERE LKYRL+GS+ ++ SWGHEYVR+LAGE+A+E+ +    ++A  + L+ LV+EIV ++M HNAE EA DLLME+E  D+L + +D   + + CLY
Sbjct:   55 ELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMAPGENKCFAADIISVLAMTMS--GERECLKYRLVGSQEELASWGHEYVRHLAGEVAKEWQELDDAEKAQREPLLTLVKEIVPYNMAHNAEHEACDLLMEIEQVDMLEKDIDENAYAKVCLY 232          
BLAST of FC878171 vs. ExPASy Swiss-Prot
Match: PSMD2_DICDI (26S proteasome non-ATPase regulatory subunit 2 OS=Dictyostelium discoideum GN=psmD2 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.125e-46
Identity = 96/178 (53.93%), Postives = 125/178 (70.22%), Query Frame = 1
Query:  376 LELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMLDSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEASIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDFDLLVEHVDATNFKRTCLY 909
            LEL VER +D    +   ALE+++TEIR+STSSMTSVPKPLKFLR HY TL   Y+   +   K  +ADILSVLA+  +   ER++LKY+LLGS   I SWGHEYV++LA EI  EY  ++ +  S++DL++LV EIV F M HNAEPEA DLL+EVE    + +++D  N+ R CLY
Sbjct:   66 LELLVERSRDEKEEIALAALEALKTEIRSSTSSMTSVPKPLKFLRNHYSTLVDIYKNSKEGKAKTSLADILSVLAMA-NGNDERDTLKYKLLGSGEAIASWGHEYVKHLATEIGVEYDIKKEENQSVEDLLKLVDEIVPFQMTHNAEPEACDLLLEVEQLSKIFQYIDENNYSRVCLY 242          
BLAST of FC878171 vs. ExPASy Swiss-Prot
Match: RPN1_SCHPO (26S proteasome regulatory subunit rpn1 OS=Schizosaccharomyces pombe GN=rpn1 PE=1 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 1.165e-43
Identity = 95/178 (53.37%), Postives = 117/178 (65.73%), Query Frame = 1
Query:  376 LELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMLDSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEASIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDFDLLVEHVDATNFKRTCLY 909
            LEL V+ VQD  P L   +L  ++  IRTSTSSMT+VPKPLKFLRPHY TL   Y++   S  K  +ADILSVL ++ S   + ESLKYRL G   D   WGHEYVR+LA EI +E+A RQ +EA  DDLMEL   IV F + HNAE +A+DLL E+   + +V  V+  N  R CLY
Sbjct:   57 LELLVQAVQDATPELVGSSLTQLKEIIRTSTSSMTAVPKPLKFLRPHYFTLVKIYDSWPQSPQKTQLADILSVLGMSYSNTSKHESLKYRLQGVTTDPSLWGHEYVRHLASEIEEEFASRQEEEAPTDDLMELALTIVPFFLTHNAEADAIDLLQELGAIEKVVPFVELDNASRVCLY 234          
BLAST of FC878171 vs. ExPASy Swiss-Prot
Match: RPN1_NEUCR (26S proteasome regulatory subunit rpn-1 OS=Neurospora crassa GN=rpn-1 PE=3 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 1.288e-42
Identity = 88/179 (49.16%), Postives = 121/179 (67.60%), Query Frame = 1
Query:  373 QLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMLDSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEASIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDFDLLVEHVDATNFKRTCLY 909
            +LE+ VER+ + D  L K ALE+M+  I+TSTSSMT+VPKPLKFLRPHY T+   Y+     D K  +AD+LSV+ +T S E  +++LKYRLL    DIGSWGHEYVR+LA EI + YAKR  ++    +L++L   +V   +K NAE +AVDL+ E+E  + L + +D   + R CLY
Sbjct:   58 ELEMLVERLTESDATLYKPALEAMKNSIKTSTSSMTAVPKPLKFLRPHYETMTKLYDEWPAGDDKSSLADVLSVIGMTYSDEDRQDTLKYRLLSPTQDIGSWGHEYVRHLALEIGEVYAKRIANDEPTQELVDLALVLVPLFLKSNAEADAVDLMSELEIIEELPKFLDENTYSRVCLY 236          
BLAST of FC878171 vs. ExPASy Swiss-Prot
Match: RPN1_YEAST (26S proteasome regulatory subunit RPN1 OS=Saccharomyces cerevisiae GN=RPN1 PE=1 SV=3)

HSP 1 Score: 161.384 bits (407), Expect = 6.613e-39
Identity = 87/200 (43.50%), Postives = 119/200 (59.50%), Query Frame = 1
Query:  376 LELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMLDSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEY----AKRQTDEASID------------------DLMELVQEIVAFHMKHNAEPEAVDLLMEVEDFDLLVEHVDATNFKRTCLY 909
            LEL VER+++ D  L + +L +++  I+ STSSMT+VPKPLKFLRP Y  L + Y+   D +LK  +AD+LS+LA+T S  G+ +SL+YRLL    D   WGHEY+R+LA EI + Y     K   DE S D                  D + L  +IV + +KHN E +AVDLL+E+E  D L + VD   F+R C Y
Sbjct:   49 LELLVERLKEDDSSLYEASLNALKESIKNSTSSMTAVPKPLKFLRPTYPDLCSIYDKWTDPNLKSSLADVLSILAMTYSENGKHDSLRYRLLSDVSDFEGWGHEYIRHLALEIGEVYNDQVEKDAEDETSSDGSKSDGSAATSGFEFSKEDTLRLCLDIVPYFLKHNGEEDAVDLLLEIESIDKLPQFVDENTFQRVCQY 248          
BLAST of FC878171 vs. ExPASy Swiss-Prot
Match: RPN1_CANGA (26S proteasome regulatory subunit RPN1 OS=Candida glabrata GN=RPN1 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.991e-35
Identity = 84/198 (42.42%), Postives = 116/198 (58.59%), Query Frame = 1
Query:  376 LELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMLDSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEA--------------------SIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDFDLLVEHVDATNFKRTCLY 909
            LE+ V+ + + D  L +  L  ++  I+ STSSMT+VPKPLKFLRP Y  L   Y+   D D K  +AD+LSVLA+T S   + +SL++RLL    +I SWGHEYVR+LA EI + Y ++   EA                    S D +++L  EIV + MKHN E +AVDLL+E+E  + L + VD   +KR C Y
Sbjct:   49 LEMLVQTLLEDDSKLYETTLTQLKEFIKNSTSSMTAVPKPLKFLRPFYPDLCKAYDKWSDKDQKSSLADMLSVLAMTYSDTHQHDSLRFRLLSDTSNIASWGHEYVRHLALEIGEVYNEQVEKEAEDNSTSTESSPQPPHMNFEFSKDVILQLSLEIVPYFMKHNGEEDAVDLLLEIEAIEKLPQFVDENTYKRVCQY 246          
The following BLAST results are available for this feature:
BLAST of FC878171 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
PSMD2_RAT1.855e-4955.0026S proteasome non-ATPase regulatory subunit 2 OS=... [more]
PSMD2_HUMAN1.855e-4954.4426S proteasome non-ATPase regulatory subunit 2 OS=... [more]
PSMD2_BOVIN1.855e-4954.4426S proteasome non-ATPase regulatory subunit 2 OS=... [more]
PSMD2_PONAB2.423e-4953.8926S proteasome non-ATPase regulatory subunit 2 OS=... [more]
PSMD2_MOUSE2.423e-4955.0026S proteasome non-ATPase regulatory subunit 2 OS=... [more]
PSMD2_DICDI1.125e-4653.9326S proteasome non-ATPase regulatory subunit 2 OS=... [more]
RPN1_SCHPO1.165e-4353.3726S proteasome regulatory subunit rpn1 OS=Schizosa... [more]
RPN1_NEUCR1.288e-4249.1626S proteasome regulatory subunit rpn-1 OS=Neurosp... [more]
RPN1_YEAST6.613e-3943.5026S proteasome regulatory subunit RPN1 OS=Saccharo... [more]
RPN1_CANGA1.991e-3542.4226S proteasome regulatory subunit RPN1 OS=Candida ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA83DG06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA83DG06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878171 ID=FC878171; Name=FC878171; organism=Citrus clementina; type=EST; length=909bp
TTTCATTGCTATCAGCAGCTCAATTAGAACCTTGCTTCTTCTGGATGAAA
TTGGAAAATCGGAAATCGAGCTTACTTATTGTTCATTATTTCAAAACAAA
TTCCTCGGCCGTTAATCCAATCTCTCTACCTCCAATTCCGCTATTCGACA
ATCCTATCCCTGCCTCCAAGCTAGGGTTTTTGTCACTTGAGATTTTTGTT
CCGCCCTAGGGTTTTCTCTTATTCACTGCTAAGCATGGCTCCGGATCCAA
ACAGCGCCAGTGGCAGCGGAACCAAAGATGAGGCCTCCGTCAAGGTTCCG
GCCAAGGATCCCAAGAAGAAGGACGATAAGAAGGATGAGGATCTGTCAGA
GGAGGATTTGGCGTTGAAGCAGCAATTGGAGCTGTATGTGGAAAGGGTGC
AGGATCCTGATCCCGGATTGCAGAAGGTTGCTCTTGAGAGTATGAGGACG
GAAATTCGAACCTCAACAAGCTCCATGACTTCAGTTCCAAAGCCATTAAA
GTTTCTTCGACCTCATTATGGAACTTTAAAAGCATATTATGAAACAATGC
TAGATTCAGATTTGAAGAAATACATGGCAGATATCCTTTCTGTTTTGGCA
CTGACCATGTCAGCTGAGGGAGAACGGGAGAGCTTGAAGTACAGATTGTT
GGGCTCGGAAGGTGATATTGGTTCATGGGGTCATGAATATGTCAGGAATT
TGGCTGGAGAAATTGCACAAGAGTATGCAAAGCGACAGACTGATGAGGCC
TCAATTGACGACTTAATGGAACTTGTTCAAGAAATTGTTGCTTTCCACAT
GAAGCACAATGCTGAACCTGAAGCTGTTGATTTGTTGATGGAGGTCGAAG
ACTTTGATCTGTTGGTTGAACATGTGGATGCTACAAATTTTAAGCGGACT
TGTCTATAC
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