FC878171
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC878171 vs. ExPASy Swiss-Prot
Match: PSMD2_RAT (26S proteasome non-ATPase regulatory subunit 2 OS=Rattus norvegicus GN=Psmd2 PE=2 SV=1) HSP 1 Score: 196.438 bits (498), Expect = 1.855e-49 Identity = 99/180 (55.00%), Postives = 134/180 (74.44%), Query Frame = 1 Query: 373 QLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMLDSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAK-RQTDEASIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDFDLLVEHVDATNFKRTCLY 909 +LE+ VER+ + D L + ALE +R +IR+ST+SMTSVPKPLKFLRPHYG LK YE M + K + ADI+SVLA+TMS GERE LKYRL+GS+ ++ SWGHEYVR+LAGE+A+E+ + ++A + L+ LV+EIV ++M HNAE EA DLLME+E D+L + +D + + CLY Sbjct: 55 ELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMAPGENKCFAADIISVLAMTMS--GERECLKYRLVGSQEELASWGHEYVRHLAGEVAKEWQELDDAEKAQREPLLTLVKEIVPYNMAHNAEHEACDLLMEIEQVDMLEKDIDENAYSKVCLY 232
BLAST of FC878171 vs. ExPASy Swiss-Prot
Match: PSMD2_HUMAN (26S proteasome non-ATPase regulatory subunit 2 OS=Homo sapiens GN=PSMD2 PE=1 SV=3) HSP 1 Score: 196.438 bits (498), Expect = 1.855e-49 Identity = 98/180 (54.44%), Postives = 134/180 (74.44%), Query Frame = 1 Query: 373 QLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMLDSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAK-RQTDEASIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDFDLLVEHVDATNFKRTCLY 909 +LE+ VER+ + D L + ALE +R +IR+ST+SMTSVPKPLKFLRPHYG LK YE M + K++ ADI+SVLA+TMS GERE LKYRL+GS+ ++ SWGHEYVR+LAGE+A+E+ + ++ + L+ LV+EIV ++M HNAE EA DLLME+E D+L + +D + + CLY Sbjct: 55 ELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMAPGENKRFAADIISVLAMTMS--GERECLKYRLVGSQEELASWGHEYVRHLAGEVAKEWQELDDAEKVQREPLLTLVKEIVPYNMAHNAEHEACDLLMEIEQVDMLEKDIDENAYAKVCLY 232
BLAST of FC878171 vs. ExPASy Swiss-Prot
Match: PSMD2_BOVIN (26S proteasome non-ATPase regulatory subunit 2 OS=Bos taurus GN=PSMD2 PE=1 SV=2) HSP 1 Score: 196.438 bits (498), Expect = 1.855e-49 Identity = 98/180 (54.44%), Postives = 134/180 (74.44%), Query Frame = 1 Query: 373 QLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMLDSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAK-RQTDEASIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDFDLLVEHVDATNFKRTCLY 909 +LE+ VER+ + D L + ALE +R +IR+ST+SMTSVPKPLKFLRPHYG LK YE M + K++ ADI+SVLA+TMS GERE LKYRL+GS+ ++ SWGHEYVR+LAGE+A+E+ + ++ + L+ LV+EIV ++M HNAE EA DLLME+E D+L + +D + + CLY Sbjct: 55 ELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMAPGENKRFAADIISVLAMTMS--GERECLKYRLVGSQEELASWGHEYVRHLAGEVAKEWQELDDAEKTQREPLLTLVKEIVPYNMAHNAEHEACDLLMEIEQVDMLEKDIDENAYAKVCLY 232
BLAST of FC878171 vs. ExPASy Swiss-Prot
Match: PSMD2_PONAB (26S proteasome non-ATPase regulatory subunit 2 OS=Pongo abelii GN=PSMD2 PE=2 SV=1) HSP 1 Score: 196.052 bits (497), Expect = 2.423e-49 Identity = 97/180 (53.89%), Postives = 134/180 (74.44%), Query Frame = 1 Query: 373 QLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMLDSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAK-RQTDEASIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDFDLLVEHVDATNFKRTCLY 909 +LE+ VER+ + D L + ALE +R +IR+ST+SMTSVPKPLKFLRPHYG LK YE M + K++ ADI+SVLA+TMS GERE LKYRL+GS+ ++ SWGHEYVR+LAGE+A+E+ + ++ + L+ LV+EI+ ++M HNAE EA DLLME+E D+L + +D + + CLY Sbjct: 55 ELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMAPGENKRFAADIISVLAMTMS--GERECLKYRLVGSQEELASWGHEYVRHLAGEVAKEWQELDDAEKVQREPLLTLVKEIIPYNMAHNAEHEACDLLMEIEQVDMLEKDIDENAYAKVCLY 232
BLAST of FC878171 vs. ExPASy Swiss-Prot
Match: PSMD2_MOUSE (26S proteasome non-ATPase regulatory subunit 2 OS=Mus musculus GN=Psmd2 PE=1 SV=1) HSP 1 Score: 196.052 bits (497), Expect = 2.423e-49 Identity = 99/180 (55.00%), Postives = 134/180 (74.44%), Query Frame = 1 Query: 373 QLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMLDSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAK-RQTDEASIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDFDLLVEHVDATNFKRTCLY 909 +LE+ VER+ + D L + ALE +R +IR+ST+SMTSVPKPLKFLRPHYG LK YE M + K + ADI+SVLA+TMS GERE LKYRL+GS+ ++ SWGHEYVR+LAGE+A+E+ + ++A + L+ LV+EIV ++M HNAE EA DLLME+E D+L + +D + + CLY Sbjct: 55 ELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMAPGENKCFAADIISVLAMTMS--GERECLKYRLVGSQEELASWGHEYVRHLAGEVAKEWQELDDAEKAQREPLLTLVKEIVPYNMAHNAEHEACDLLMEIEQVDMLEKDIDENAYAKVCLY 232
BLAST of FC878171 vs. ExPASy Swiss-Prot
Match: PSMD2_DICDI (26S proteasome non-ATPase regulatory subunit 2 OS=Dictyostelium discoideum GN=psmD2 PE=2 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 1.125e-46 Identity = 96/178 (53.93%), Postives = 125/178 (70.22%), Query Frame = 1 Query: 376 LELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMLDSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEASIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDFDLLVEHVDATNFKRTCLY 909 LEL VER +D + ALE+++TEIR+STSSMTSVPKPLKFLR HY TL Y+ + K +ADILSVLA+ + ER++LKY+LLGS I SWGHEYV++LA EI EY ++ + S++DL++LV EIV F M HNAEPEA DLL+EVE + +++D N+ R CLY Sbjct: 66 LELLVERSRDEKEEIALAALEALKTEIRSSTSSMTSVPKPLKFLRNHYSTLVDIYKNSKEGKAKTSLADILSVLAMA-NGNDERDTLKYKLLGSGEAIASWGHEYVKHLATEIGVEYDIKKEENQSVEDLLKLVDEIVPFQMTHNAEPEACDLLLEVEQLSKIFQYIDENNYSRVCLY 242
BLAST of FC878171 vs. ExPASy Swiss-Prot
Match: RPN1_SCHPO (26S proteasome regulatory subunit rpn1 OS=Schizosaccharomyces pombe GN=rpn1 PE=1 SV=2) HSP 1 Score: 177.178 bits (448), Expect = 1.165e-43 Identity = 95/178 (53.37%), Postives = 117/178 (65.73%), Query Frame = 1 Query: 376 LELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMLDSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEASIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDFDLLVEHVDATNFKRTCLY 909 LEL V+ VQD P L +L ++ IRTSTSSMT+VPKPLKFLRPHY TL Y++ S K +ADILSVL ++ S + ESLKYRL G D WGHEYVR+LA EI +E+A RQ +EA DDLMEL IV F + HNAE +A+DLL E+ + +V V+ N R CLY Sbjct: 57 LELLVQAVQDATPELVGSSLTQLKEIIRTSTSSMTAVPKPLKFLRPHYFTLVKIYDSWPQSPQKTQLADILSVLGMSYSNTSKHESLKYRLQGVTTDPSLWGHEYVRHLASEIEEEFASRQEEEAPTDDLMELALTIVPFFLTHNAEADAIDLLQELGAIEKVVPFVELDNASRVCLY 234
BLAST of FC878171 vs. ExPASy Swiss-Prot
Match: RPN1_NEUCR (26S proteasome regulatory subunit rpn-1 OS=Neurospora crassa GN=rpn-1 PE=3 SV=2) HSP 1 Score: 173.711 bits (439), Expect = 1.288e-42 Identity = 88/179 (49.16%), Postives = 121/179 (67.60%), Query Frame = 1 Query: 373 QLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMLDSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEASIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDFDLLVEHVDATNFKRTCLY 909 +LE+ VER+ + D L K ALE+M+ I+TSTSSMT+VPKPLKFLRPHY T+ Y+ D K +AD+LSV+ +T S E +++LKYRLL DIGSWGHEYVR+LA EI + YAKR ++ +L++L +V +K NAE +AVDL+ E+E + L + +D + R CLY Sbjct: 58 ELEMLVERLTESDATLYKPALEAMKNSIKTSTSSMTAVPKPLKFLRPHYETMTKLYDEWPAGDDKSSLADVLSVIGMTYSDEDRQDTLKYRLLSPTQDIGSWGHEYVRHLALEIGEVYAKRIANDEPTQELVDLALVLVPLFLKSNAEADAVDLMSELEIIEELPKFLDENTYSRVCLY 236
BLAST of FC878171 vs. ExPASy Swiss-Prot
Match: RPN1_YEAST (26S proteasome regulatory subunit RPN1 OS=Saccharomyces cerevisiae GN=RPN1 PE=1 SV=3) HSP 1 Score: 161.384 bits (407), Expect = 6.613e-39 Identity = 87/200 (43.50%), Postives = 119/200 (59.50%), Query Frame = 1 Query: 376 LELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMLDSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEY----AKRQTDEASID------------------DLMELVQEIVAFHMKHNAEPEAVDLLMEVEDFDLLVEHVDATNFKRTCLY 909 LEL VER+++ D L + +L +++ I+ STSSMT+VPKPLKFLRP Y L + Y+ D +LK +AD+LS+LA+T S G+ +SL+YRLL D WGHEY+R+LA EI + Y K DE S D D + L +IV + +KHN E +AVDLL+E+E D L + VD F+R C Y Sbjct: 49 LELLVERLKEDDSSLYEASLNALKESIKNSTSSMTAVPKPLKFLRPTYPDLCSIYDKWTDPNLKSSLADVLSILAMTYSENGKHDSLRYRLLSDVSDFEGWGHEYIRHLALEIGEVYNDQVEKDAEDETSSDGSKSDGSAATSGFEFSKEDTLRLCLDIVPYFLKHNGEEDAVDLLLEIESIDKLPQFVDENTFQRVCQY 248
BLAST of FC878171 vs. ExPASy Swiss-Prot
Match: RPN1_CANGA (26S proteasome regulatory subunit RPN1 OS=Candida glabrata GN=RPN1 PE=3 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 1.991e-35 Identity = 84/198 (42.42%), Postives = 116/198 (58.59%), Query Frame = 1 Query: 376 LELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMLDSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEA--------------------SIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDFDLLVEHVDATNFKRTCLY 909 LE+ V+ + + D L + L ++ I+ STSSMT+VPKPLKFLRP Y L Y+ D D K +AD+LSVLA+T S + +SL++RLL +I SWGHEYVR+LA EI + Y ++ EA S D +++L EIV + MKHN E +AVDLL+E+E + L + VD +KR C Y Sbjct: 49 LEMLVQTLLEDDSKLYETTLTQLKEFIKNSTSSMTAVPKPLKFLRPFYPDLCKAYDKWSDKDQKSSLADMLSVLAMTYSDTHQHDSLRFRLLSDTSNIASWGHEYVRHLALEIGEVYNEQVEKEAEDNSTSTESSPQPPHMNFEFSKDVILQLSLEIVPYFMKHNGEEDAVDLLLEIEAIEKLPQFVDENTYKRVCQY 246 The following BLAST results are available for this feature:
BLAST of FC878171 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 11
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878171 ID=FC878171; Name=FC878171; organism=Citrus clementina; type=EST; length=909bpback to top |