FC878174

Overview
NameFC878174
Unique NameFC878174
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length899
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4600 contig Ccv1_Contig4600:1..899. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878174 vs. ExPASy Swiss-Prot
Match: PEL59_SOLLC (Probable pectate lyase P59 OS=Solanum lycopersicum GN=LAT59 PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 7.090e-70
Identity = 131/267 (49.06%), Postives = 173/267 (64.79%), Query Frame = 1
Query:  109 LSAIAEADEVWRRRAEEAMQTTEQYYDPDPVAVASNLNMKVQDLSKQ---------TAARRGLLNAE-SGQCEATNPIDKCWRCKENWAEDRQALAGCALXXXXXXXXXXXXXIYEVTDSSDNNMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQQELVVQGNKTIDGRGANVHIANGAGIRLQFVQNVXXXXXXXXXXSPASGGMIRDSVDHVGNRGPSDGDAVSVFGSSNIWLDHLTLSKAQDGLIDAIQGSTAITISNCHLSN 879
            ++ I   DEVWRRRAEEA +     Y+P P  V    N K++D  K+          + RRGL   + +G C  TNPIDKCWRC  NWA++R+ LA CA+              Y VTD+SD+   +PK GTLRHAVIQKEPLWIIF + MNI+L QE+++Q +KTID RG NVHI  GAGI LQ+++NV             +GGM+RD+VDH+G R  SDGD +S+FG+S IW+DH+++ +  DGLIDA++GST ITISN H ++
Sbjct:   25 MAHIGHYDEVWRRRAEEAKEYARNIYEPHPENVTLAFNQKLRDTMKELKKVKGTHNNSTRRGLGTKKYTGPCMVTNPIDKCWRCDPNWADNRKKLADCAMGFGSKAIGGKDGEFYVVTDNSDD-YNDPKPGTLRHAVIQKEPLWIIFKRGMNIRLHQEMIMQSDKTIDARGVNVHITKGAGITLQYIKNVIIHGLHIHDIVEGNGGMVRDAVDHIGIRTKSDGDGISIFGASYIWIDHVSMQRCYDGLIDAVEGSTGITISNGHFTD 290          
BLAST of FC878174 vs. ExPASy Swiss-Prot
Match: PEL_LILLO (Pectate lyase OS=Lilium longiflorum PE=2 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 3.293e-67
Identity = 125/253 (49.41%), Postives = 162/253 (64.03%), Query Frame = 1
Query:  118 IAEADEVWRRRAEEAMQTTEQYYDPDPVAVASNLNMKVQDLSKQTAARRGLLNAESGQCEATNPIDKCWRCKENWAEDRQALAGCALXXXXXXXXXXXXXIYEVTDSSDNNMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQQELVVQGNKTIDGRGANVHIANGAGIRLQFVQNVXXXXXXXXXXSPASGGMIRDSVDHVGNRGPSDGDAVSVFGSSNIWLDHLTLSKAQDGLIDAIQGSTAITISNCHLS 876
            IAE DE W+++++ A    ++ Y P P  V ++ N  V    +  + RR L   + GQC ATNPID+CWRCK+NW+ +R+ L  C               IY VTD SD+++ +PK GTLR  VIQ  PLWIIF K M I+L+QEL++  +KTIDGRGANV IA GA + +QFV NV           P  GG+IRDS  H G R  SDGD +S+ GSSNIW+DH++L++  DGLID I GSTAITISNCHL+
Sbjct:   24 IAEFDEYWQKKSKVAQAKAKKAYTPHPEEVTNHFNKAVHSSFEGNSTRRNLRTNKLGQCLATNPIDRCWRCKKNWSANRKDLVKCVKGFGRKTTGGAAGEIYVVTDPSDDSLTDPKFGTLRWGVIQDRPLWIIFGKSMVIRLKQELIINNDKTIDGRGANVQIAGGAQLTVQFVHNVIIHGIHIHDIKPGEGGLIRDSEKHSGIRTRSDGDGISIIGSSNIWIDHVSLARCSDGLIDVILGSTAITISNCHLT 276          
BLAST of FC878174 vs. ExPASy Swiss-Prot
Match: PEL19_ARATH (Putative pectate lyase 19 OS=Arabidopsis thaliana GN=At5g15110 PE=2 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 3.293e-67
Identity = 135/288 (46.88%), Postives = 171/288 (59.38%), Query Frame = 1
Query:  118 IAEADEVWRRRAEEAMQTTEQYYDPDPVAVASNLNMKVQD--------------------------LSKQTAARRGLLNAES--------GQCEATNPIDKCWRCKENWAEDRQALAGCALXXXXXXXXXXXXXIYEVTDSSDNNMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQQELVVQGNKTIDGRGANVHIANGAGIRLQFVQNVXXXXXXXXXXSPASGGMIRDSVDHVGNRGPSDGDAVSVFGSSNIWLDHLTLSKAQDGLIDAIQGSTAITISNCHLSN 879
            I+E DE W +RA+EA + T Q Y  DP  +  + + +  D                          L   T + R  L  +         G C A+NPIDKCWRC+ +WA+ R+ L  C               IY VT + D +M NPK GTLRHAVIQKEPLWIIF  DM+I+L QEL++  +KTID RGANVH+A+GAGI +QFV+NV          S +SGGMIRDSVDH G R  +DGD +S++GSSNIWLDH+++SK QDGLIDAI GST ITISN H ++
Sbjct:   26 ISELDEYWSQRADEAREFTLQAYHSDPYEIVDHFHERHYDNSTDVTTPEEDGDAKPEEEEKEFIEMLGSSTNSTRRSLRGKGKGKWSKLKGPCTASNPIDKCWRCRSDWAKRRKKLTRCVRGFGHRTTGGKRGRIYVVTSNLDEDMVNPKPGTLRHAVIQKEPLWIIFKNDMSIRLNQELLINSHKTIDARGANVHVAHGAGITMQFVKNVIIHGLHIHHISESSGGMIRDSVDHFGMRTRADGDGLSIYGSSNIWLDHISMSKCQDGLIDAIVGSTGITISNSHFTH 313          
BLAST of FC878174 vs. ExPASy Swiss-Prot
Match: PEL7_ARATH (Probable pectate lyase 7 OS=Arabidopsis thaliana GN=At3g01270 PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 8.968e-65
Identity = 130/288 (45.14%), Postives = 168/288 (58.33%), Query Frame = 1
Query:  124 EADEVWRRRAEEAMQTTEQYYDPDPV------------------------AVASNLNMKVQDLSKQTAARRGLLNAE------------SGQCEATNPIDKCWRCKENWAEDRQALAGCALXXXXXXXXXXXXXIYEVTDSSDNNMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQQELVVQGNKTIDGRGANVHIANGAGIRLQFVQNVXXXXXXXXXXSPASGGMIRDSVDHVGNRGPSDGDAVSVFGSSNIWLDHLTLSKAQDGLIDAIQGSTAITISNCHLSN 879
            E DE W  +A EA + T   Y PDP                         AVAS     ++ +S  T + R  L               +G C A+NPIDKCWRC+ +WA  R+ L  C               IY VT   D++M NP+ GTLRHAVIQKEPLWI+F  DM+I+L QEL++  +KTID RGANVHIA GAGI +Q+V N+            +SGG+IRDS++H G+RG +DGD +S+FG++NIWLDH+++SK QDGLIDAI GSTAITISN H ++
Sbjct:   29 ETDEYWVNKANEARKHTLMAYHPDPYEIVDHFHERHYDNSTDVEGTEEEKAVASEEEDVIEMISSPTNSTRRSLTGRGKGKGKGKWSKLTGPCTASNPIDKCWRCQPDWARRRKKLVHCVRGFGYRTTGGKRGRIYVVTSPRDDDMVNPRPGTLRHAVIQKEPLWIVFKHDMSIRLSQELMITSDKTIDARGANVHIAYGAGITMQYVHNIIIHGLHVHHIVKSSGGLIRDSINHFGHRGEADGDGISIFGATNIWLDHISMSKCQDGLIDAIMGSTAITISNSHFTH 316          
BLAST of FC878174 vs. ExPASy Swiss-Prot
Match: PEL3_ARATH (Probable pectate lyase 3 OS=Arabidopsis thaliana GN=AT59 PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 5.813e-64
Identity = 126/266 (47.37%), Postives = 166/266 (62.41%), Query Frame = 1
Query:  118 IAEADEVWRRRAEEAMQTTEQYYDPDPVAVASNLNMKVQ---DLSKQ--------TAARRGL-LNAESGQCEATNPIDKCWRCKENWAEDRQALAGCALXXXXXXXXXXXXXIYEVTDSSDNNMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQQELVVQGNKTIDGRGANVHIANGAGIRLQFVQNVXXXXXXXXXXSPASGGMIRDSVDHVGNRGPSDGDAVSVFGSSNIWLDHLTLSKAQDGLIDAIQGSTAITISNCHLSN 879
            +A  D  W +R  +A++ T   YDP P+ V ++ N  V    D S+         T  R G   +  SG+C A NPID CWRC  NWA +R+ LA C L             IY V D+SDN++ NPK GTLRHAV +  PLWIIFA+ M IKLQQEL++  +KTIDGRGA V+I  GAG+ LQFV NV           P +GG+IRDS  H+G R  SDGD +S+FG++NIW+DH+++++  DG+IDAI GSTA+TISN H ++
Sbjct:   31 VAVFDSYWTQRQSDALKQTIGSYDPHPLNVTNHFNYHVNIAVDASESRNDTRRELTQVRSGRKTHKSSGKCLAYNPIDNCWRCDRNWANNRKKLADCVLGFGRRTTGGKDGPIYVVKDASDNDLINPKPGTLRHAVTRDGPLWIIFARSMIIKLQQELMITSDKTIDGRGARVYIMEGAGLTLQFVNNVIIHNIYVKHIVPGNGGLIRDSEAHIGLRTKSDGDGISLFGATNIWIDHVSMTRCADGMIDAIDGSTAVTISNSHFTD 296          
BLAST of FC878174 vs. ExPASy Swiss-Prot
Match: PEL_TOBAC (Pectate lyase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 2.700e-61
Identity = 113/208 (54.33%), Postives = 143/208 (68.75%), Query Frame = 1
Query:  259 RRGLLNAE-SGQCEATNPIDKCWRCKENWAEDRQALAGCALXXXXXXXXXXXXXIYEVTDSSDNNMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQQELVVQGNKTIDGRGANVHIANGAGIRLQFVQNVXXXXXXXXXXSPASGGMIRDSVDHVGNRGPSDGDAVSVFGSSNIWLDHLTLSKAQDGLIDAIQGSTAITISNCHLSN 879
            RR L N +  G C A N IDKCWRC  NWAE+RQ +A CAL             IY VTD+SD+++ +PK GTLR+ VIQKEPLWIIF K+M IKL +EL+V  NKTIDGRG NVHI NGAGI++Q   N+           P  GG++R+S DHVG RG  +GD +S+F S +IW+DH+++S+A DGLIDA+  ST ITISNCH ++
Sbjct:   30 RRQLSNKKYKGPCRAENAIDKCWRCDPNWAENRQKMADCALGFGSNAIGGKLGRIYVVTDNSDDDVVDPKPGTLRYGVIQKEPLWIIFGKNMKIKLSRELIVTSNKTIDGRGFNVHIQNGAGIKIQSASNIIISNLRIHNIVPTPGGLLRESEDHVGLRGSDEGDGISIFSSHDIWIDHISMSRATDGLIDAVAASTNITISNCHFTD 237          
BLAST of FC878174 vs. ExPASy Swiss-Prot
Match: PEL56_SOLLC (Probable pectate lyase P56 OS=Solanum lycopersicum GN=LAT56 PE=2 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 1.935e-59
Identity = 111/209 (53.11%), Postives = 140/209 (66.99%), Query Frame = 1
Query:  253 AARRGLLNAESGQCEATNPIDKCWRCKENWAEDRQALAGCALXXXXXXXXXXXXXIYEVTDSSDNNMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQQELVVQGNKTIDGRGANVHIANGAGIRLQFVQNVXXXXXXXXXXSPASGGMIRDSVDHVGNRGPSDGDAVSVFGSSNIWLDHLTLSKAQDGLIDAIQGSTAITISNCHLSN 879
            A RR L     G C A N IDKCWRC   WAEDRQ +A CAL              Y VTD+SD+++ +PK GTLR  VIQK PLWI FA+ M I+L +EL+V  NKTIDGRG  VHIANGAGI++Q   NV           P +GG++R+S DH+G RG  +GDA+S+F S +IW+DH+++S+A DGLIDA+ GST ITISNCH ++
Sbjct:   30 APRRKLTKKYRGPCMAVNSIDKCWRCDPFWAEDRQKMADCALGFGINAMGGKYGPYYIVTDNSDDDVVDPKPGTLRFGVIQKGPLWITFARSMRIRLTRELIVSSNKTIDGRGKYVHIANGAGIKIQSASNVIISNLRIHNIVPTAGGLLRESDDHLGLRGADEGDAISIFNSHDIWIDHISMSRATDGLIDAVAGSTNITISNCHFTD 238          
BLAST of FC878174 vs. ExPASy Swiss-Prot
Match: PEL6_ARATH (Probable pectate lyase 6 OS=Arabidopsis thaliana GN=At2g02720 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.527e-59
Identity = 117/266 (43.98%), Postives = 160/266 (60.15%), Query Frame = 1
Query:  118 IAEADEVWRRRAEEAMQTTEQYYDPDPVAVASNLN------MKVQDLSKQT------AARRGLLNAESGQCEATNPIDKCWRCKENWAEDRQALAGCALXXXXXXXXXXXXXIYEVTDSSDNNMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQQELVVQGNKTIDGRGANVHIANGAGIRLQFVQNVXXXXXXXXXXSPASGGMIRDSVDHVGNRGPSDGDAVSVFGSSNIWLDHLTLSKAQDGLIDAIQGSTAITISNCHLSN 879
            IAE DE W +R   A++ T + YDP+P  V  + N      M+   +  +T        R        G+ E+ N IDKCWR  +NW ++R+ LA C L             IY VTD SDN++  PK GT+RHAV +  PLWIIFA+ M IKLQQEL++  +KTIDGRGA ++I  GAG+ LQFV+NV             +GG+I DS  H G R  SDGD +++FG++N+W+DH++++   DG+IDAI GSTAITISN H ++
Sbjct:   27 IAEYDEYWTQRQTNALRETLESYDPNPENVTDHFNYHAALAMETTGIVNETRRDLRQVGRGKKTTRRGGRFESLNAIDKCWRGDKNWDKNRKKLADCVLGFGRKTTGGKNGPIYVVTDPSDNDLLKPKPGTIRHAVTRDRPLWIIFARSMIIKLQQELIITNDKTIDGRGAKIYITGGAGLTLQFVRNVIIHNIHIKQIKRGAGGLIIDSEQHFGLRTVSDGDGINIFGATNVWIDHVSMTDCSDGMIDAIMGSTAITISNSHFTD 292          
BLAST of FC878174 vs. ExPASy Swiss-Prot
Match: PEL5_ARATH (Probable pectate lyase 5 OS=Arabidopsis thaliana GN=At1g67750 PE=2 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 3.416e-56
Identity = 115/223 (51.57%), Postives = 143/223 (64.13%), Query Frame = 1
Query:  211 SNLNMKVQDLSKQTAARRGLLNAESGQCEATNPIDKCWRCKENWAEDRQALAGCALXXXXXXXXXXXXXIYEVTDSSDNNMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQQELVVQGNKTIDGRGANVHIANGAGIRLQFVQNVXXXXXXXXXXSPASGGMIRDSVDHVGNRGPSDGDAVSVFGSSNIWLDHLTLSKAQDGLIDAIQGSTAITISNCHLSN 879
            S   + VQ+++++  A R  L   S  C   NPID CWRC   W ++RQ LA CA+             IY VTDSSD ++ NPK GTLRHAVIQ EPLWIIFA+DM IKL++EL++   KTIDGRGA+VHIA GA I +Q+V N+                 +RDS  H G R  SDGDAVS+FG S++W+DH +LS   DGLIDAI GSTAITISN +LS+
Sbjct:   31 SEPELVVQEVNEKINASRRNLGVLS--CGTGNPIDDCWRCDPKWEKNRQRLADCAIGFGKHAIGGRDGKIYVVTDSSDKDVVNPKPGTLRHAVIQDEPLWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGACITVQYVTNIIIHGVNIHDCKRKGNAYVRDSPSHYGWRTASDGDAVSIFGGSHVWVDHCSLSNCADGLIDAIHGSTAITISNNYLSH 251          
BLAST of FC878174 vs. ExPASy Swiss-Prot
Match: PEL15_ARATH (Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.298e-55
Identity = 111/229 (48.47%), Postives = 141/229 (61.57%), Query Frame = 1
Query:  193 DPVAVASNLNMKVQDLSKQTAARRGLLNAESGQCEATNPIDKCWRCKENWAEDRQALAGCALXXXXXXXXXXXXXIYEVTDSSDNNMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQQELVVQGNKTIDGRGANVHIANGAGIRLQFVQNVXXXXXXXXXXSPASGGMIRDSVDHVGNRGPSDGDAVSVFGSSNIWLDHLTLSKAQDGLIDAIQGSTAITISNCHLSN 879
            DP  VA  +   VQ   +   ARR L       C   NPID CWRC  NW ++R+ LA C +              Y VTD +D ++ NPK GTLRHAVIQ+EPLWI+F +DM I+L+QEL++   KTID RG+NVHIANGA I +QF+ NV           P    M+R S  H G R  +DGDAVS+FGSS+IW+DH +LS   DGL+DA+ GSTAIT+SN H ++
Sbjct:   88 DPDMVADEVAKLVQMSEQNRTARRKL---GFFSCGTGNPIDDCWRCDRNWHKNRKRLADCGIGFGRNAIGGRDGRFYIVTDPTDEDVVNPKPGTLRHAVIQEEPLWIVFKRDMVIELKQELIMNSFKTIDARGSNVHIANGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSPSHFGWRTMADGDAVSIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITVSNNHFTH 313          
The following BLAST results are available for this feature:
BLAST of FC878174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
PEL59_SOLLC7.090e-7049.06Probable pectate lyase P59 OS=Solanum lycopersicum... [more]
PEL_LILLO3.293e-6749.41Pectate lyase OS=Lilium longiflorum PE=2 SV=1[more]
PEL19_ARATH3.293e-6746.88Putative pectate lyase 19 OS=Arabidopsis thaliana ... [more]
PEL7_ARATH8.968e-6545.14Probable pectate lyase 7 OS=Arabidopsis thaliana G... [more]
PEL3_ARATH5.813e-6447.37Probable pectate lyase 3 OS=Arabidopsis thaliana G... [more]
PEL_TOBAC2.700e-6154.33Pectate lyase OS=Nicotiana tabacum PE=2 SV=1[more]
PEL56_SOLLC1.935e-5953.11Probable pectate lyase P56 OS=Solanum lycopersicum... [more]
PEL6_ARATH2.527e-5943.98Probable pectate lyase 6 OS=Arabidopsis thaliana G... [more]
PEL5_ARATH3.416e-5651.57Probable pectate lyase 5 OS=Arabidopsis thaliana G... [more]
PEL15_ARATH1.298e-5548.47Probable pectate lyase 15 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA38CG08RM2 IVIA1 Citrus clementina cDNA clone IC0AAA38CG08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878174 ID=FC878174; Name=FC878174; organism=Citrus clementina; type=EST; length=899bp
CTCGAACTTTTGTACATTAGAATAAAACATTTGAAAAAGAAAGTAAAAAT
GGAGCTAGCTAGGCTAAAATTAATCTTTCTTTTCTCTTTTATCATTTTGA
TCCCTTGCCTATCGGCTATCGCCGAGGCCGACGAGGTATGGAGGCGACGA
GCTGAAGAAGCCATGCAGACCACTGAGCAGTACTATGATCCTGACCCTGT
AGCTGTTGCCAGCAACTTGAACATGAAAGTTCAGGACTTGTCAAAGCAGA
CTGCTGCCAGAAGGGGCTTGTTGAATGCAGAATCAGGGCAATGTGAGGCA
ACAAACCCAATTGACAAATGTTGGCGTTGCAAAGAGAACTGGGCAGAAGA
TCGGCAGGCGCTAGCAGGTTGCGCGCTTGGTTTCGGCAGTAAAGCTACCG
GAGGAAAAGGTGGAAAAATTTATGAGGTGACTGATTCTTCTGACAATAAT
ATGGAGAACCCTAAGGTTGGTACTTTACGCCATGCAGTGATCCAAAAAGA
ACCTTTATGGATCATCTTTGCCAAGGACATGAACATCAAGTTGCAACAAG
AATTGGTTGTCCAGGGTAACAAGACCATTGATGGGCGTGGAGCCAATGTA
CACATTGCCAATGGAGCTGGAATTAGGCTACAGTTTGTGCAAAATGTCAT
CATTCATGGGATTCATATTCATAACATTTCTCCTGCCAGTGGTGGTATGA
TTAGGGATTCTGTGGATCATGTGGGAAATAGAGGTCCAAGTGATGGGGAC
GCTGTTTCAGTATTTGGTTCGTCAAATATTTGGCTTGATCATCTTACATT
ATCTAAAGCCCAAGATGGGCTCATTGATGCCATTCAAGGATCTACAGCCA
TCACCATTTCAAACTGCCACCTCTCAAACATGATCAGGGCATTTTGCTA
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