FC878176

Overview
NameFC878176
Unique NameFC878176
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length915
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12287 contig Ccv1_Contig12287:10..924. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878176 vs. ExPASy Swiss-Prot
Match: PUB21_ARATH (U-box domain-containing protein 21 OS=Arabidopsis thaliana GN=PUB21 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.931e-34
Identity = 92/255 (36.08%), Postives = 144/255 (56.47%), Query Frame = 2
Query:  152 ETGASLIEKDPVTTTPRNGITYDRVNILIENERIIPVCSVEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVS-VLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASVNEKLIQKFVDMGLVSLLLEMLVDAQRSVCEKALSVLDGI 913
            E G+ LI++ P   TPR                 +P+   EV EI+ K+ +A    D   C  ++ KIK+   ESE N+ C+ +N+   VL   F+ FS    DE ++ +L EILS L  +FP+  E ++ L SA+S  C+   L S D S R+NA  ++ E++S D  + +V+  +   G  EAL KLI + +S ++TK++L+ IY  +     +      +F+++GLVS+ +EM+VDA+ SVCEKAL+VLD I
Sbjct:  100 EKGSPLIQRIP---TPR-----------------VPLMPCEVYEISRKLSSATRRGDYEKCGVIIEKIKKLGDESEKNRKCVNENSVGWVLCDCFDKFSG---DEKLTFMLNEILSLLTWMFPIGLEGISKLASATSFRCVAGLLKSTDDSVRQNAAFIMKEILSLD--ETRVHSFAVENGVAEALVKLIRDSVSSSSTKSSLIAIYQMVLQKPEI----ASEFLEIGLVSITVEMIVDAENSVCEKALAVLDAI 325          
BLAST of FC878176 vs. ExPASy Swiss-Prot
Match: PUB20_ARATH (U-box domain-containing protein 20 OS=Arabidopsis thaliana GN=PUB20 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.542e-24
Identity = 74/221 (33.48%), Postives = 124/221 (56.11%), Query Frame = 2
Query:  254 IPVCSVEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLDENVS-VLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFKLIEEPISPTATKAALVVIYHTIASSASVNEKLIQKFVDMGLVSLLLEMLVDAQRSVCEKALSVLDGI 913
            +PV S +V EI  ++  A    D   C ++V K+    KESE N+ C+ +N A  VL   F++FS+   + N S +LEE +S L  + P+  E  + L + SS   ++  L +GD    +NA  L+ EL+  + +   V+ L++  G  EA  K I      +    +L+ I+H I +    N++ + +F+++ LV++ +EMLVD++ SVCEKAL+VL+ I
Sbjct:  116 VPVTSHQVSEICERLSAATRRGDYAACMEMVTKMTRLGKESERNRKCVKENGAGLVLCVCFDAFSE---NANASLLLEETVSVLTWMLPIGLEGQSKLTTTSSFNRLVELLRNGD----QNAAFLIKELL--ELNVTHVHALTKINGVQEAFMKSINR---DSTCVNSLISIHHMILT----NQETVSRFLELDLVNITVEMLVDSENSVCEKALTVLNVI 320          
The following BLAST results are available for this feature:
BLAST of FC878176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PUB21_ARATH4.931e-3436.08U-box domain-containing protein 21 OS=Arabidopsis ... [more]
PUB20_ARATH3.542e-2433.48U-box domain-containing protein 20 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA38CG09RM2 IVIA1 Citrus clementina cDNA clone IC0AAA38CG09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878176 ID=FC878176; Name=FC878176; organism=Citrus clementina; type=EST; length=915bp
AACAATATAACTTTCTTTGCATCGATCAAACTTCGCCAAATACGTCCTTT
GATTGTTCAAGAATCAAATCTTGCACGGGATAACAATGATTCGTTCATGG
AGAAGACTAAGAGCCGGCCGGCATGCCAGGAAGGAGCAGCCGGCCCGTAG
AGAAACCGGCGCCAGCTTGATAGAAAAAGATCCGGTGACGACGACTCCAC
GAAATGGGATTACGTATGATCGAGTGAATATTCTGATTGAGAATGAGAGA
ATAATTCCGGTGTGTTCGGTTGAGGTTTTGGAAATCAATTCTAAGATTAA
GACGGCTTGTGAAACACAGGATCAAGTTGGGTGCAAAGATTTGGTGGCAA
AGATCAAGGAGTGGGCCAAGGAGAGTGAGAGCAACAAGAGTTGCATTGTG
GATAACGCAGCTGTAAGTGTTTTGGCAGCGGCGTTTGAATCATTTTCGAA
AACATGTTTGGATGAAAACGTTTCCGTTTTGGAGGAAATATTGTCAACTT
TGATTTTGTTGTTTCCTCTTGAGGGCGAGGCTCTGACTCATTTGGGATCA
GCTTCGTCTATGGGTTGCATGATTTGGTTCTTGAATAGCGGAGATTTGTC
GAGGAGAAGAAACGCCGTGTTATTGTTGACAGAGCTCGTTTCTTCTGATT
CTGATCAAAGAAAAGTAAACGTGTTATCGGAGAATGAAGGAGCCATTGAA
GCATTATTTAAGCTGATAGAAGAGCCCATCAGCCCTACTGCCACTAAAGC
TGCTTTGGTCGTCATCTATCATACGATCGCATCATCAGCTTCAGTAAATG
AGAAGCTAATACAAAAATTTGTCGACATGGGGTTGGTTTCATTGCTGCTG
GAAATGCTTGTTGATGCACAAAGAAGCGTATGCGAGAAGGCGTTGAGTGT
TCTTGATGGAATTTG
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