FC878178

Overview
NameFC878178
Unique NameFC878178
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length907
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878178 vs. ExPASy Swiss-Prot
Match: WDR53_MOUSE (WD repeat-containing protein 53 OS=Mus musculus GN=Wdr53 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.635e-13
Identity = 49/147 (33.33%), Postives = 78/147 (53.06%), Query Frame = 1
Query:   55 GHKATATCCIASRDRPGFVATSGEDGCVCWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKTLRAGHSSICSSVQFIPWKP 495
            GH ++  C  A++D  G VA+ GE G +  +      +  +   G   VTS+ F +     +Y S G+ +   DV        L+ ++ N+EEIN +  N   S LA ADD G +KI+D+ +  + ++L+  HS+ICSSV F P +P
Sbjct:    8 GHSSSILCLNANKD--GLVASGGEGGDLVAWGEDGTPLGHMQLEGADDVTSVLFSASCPTKLYASHGETISVLDVRSLKG--SLDHFHVNEEEINCLSLNETESLLASADDSGAIKILDLEKKKVTRSLKR-HSNICSSVAFRPQRP 149          
BLAST of FC878178 vs. ExPASy Swiss-Prot
Match: WDR53_DICDI (WD repeat-containing protein 53 homolog OS=Dictyostelium discoideum GN=wdr53 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.804e-12
Identity = 49/151 (32.45%), Postives = 81/151 (53.64%), Query Frame = 1
Query:   46 RLRGHKATATCCIASRDRPGFVATSGEDGCVCWFDLRS-KDVQLVTDVGNG-PVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP-ASWRPLES-YNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKTLRAGHSSICSSVQFIP 486
            +L GHK T  C I+S ++   +A+  +D  V  +DL + K +Q + +   G PV ++CF    +  +Y S    + SFD+  P    +   + Y +N EEINQ+  + K  +LA  DD G  KIID+ ++ L ++L   H++I +   F P
Sbjct:   24 KLIGHKDTVLC-ISSHNKKEIIASGSDDCTVRIWDLNTNKSIQSIVEGFQGNPVNNVCFDQ--DFTLYCSYDNIIVSFDLRQPNVILKEFNTQYKFNTEEINQLSFDSKYQYLAACDDSGQTKIIDVTKNKLVESLNKKHTNIATGCVFRP 171          
BLAST of FC878178 vs. ExPASy Swiss-Prot
Match: WDR53_BOVIN (WD repeat-containing protein 53 OS=Bos taurus GN=WDR53 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.077e-12
Identity = 51/151 (33.77%), Postives = 78/151 (51.66%), Query Frame = 1
Query:   55 GHKATATCCIASRDRPGFVATSGEDG-CVCWFDLRSKDVQLVTDV---GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKTLRAGHSSICSSVQFIPWKP 495
            GH +   C  AS++  G VA+  E G  V W     +D  L+      G   VT++ F       +Y S G+ +   DV   +   PL+ ++ N+EEIN +  N   + LA ADD G +KI+D+    + ++L+  HS+ICSSV F P +P
Sbjct:    8 GHSSPILCLNASQE--GLVASGAEGGDLVVW----GEDGTLLGHTCFQGAEDVTNVLFSPSCPTKLYASHGETISILDVR--SLKEPLDDFHVNEEEINCLSLNETENLLASADDSGTIKILDLENKKISRSLKR-HSNICSSVAFRPQRP 149          
BLAST of FC878178 vs. ExPASy Swiss-Prot
Match: WDR53_HUMAN (WD repeat-containing protein 53 OS=Homo sapiens GN=WDR53 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.605e-11
Identity = 46/147 (31.29%), Postives = 73/147 (49.66%), Query Frame = 1
Query:   55 GHKATATCCIASRDRPGFVATSGEDGCVCWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKTLRAGHSSICSSVQFIPWKP 495
            GH +   C  AS++  G +A+  E G +  +      +      G   VTS+ F       +Y S G+ +   DV        L+ ++ N+EEIN +  N   + LA ADD G +KI+D+    + ++L+  HS+ICSSV F P +P
Sbjct:    8 GHSSPVLCLNASKE--GLLASGAEGGDLTAWGEDGTPLGHTRFQGADDVTSVLFSPSCPTKLYASHGETISVLDVRSLKD--SLDHFHVNEEEINCLSLNQTENLLASADDSGAIKILDLENKKVIRSLKR-HSNICSSVAFRPQRP 149          
The following BLAST results are available for this feature:
BLAST of FC878178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
WDR53_MOUSE3.635e-1333.33WD repeat-containing protein 53 OS=Mus musculus GN... [more]
WDR53_DICDI1.804e-1232.45WD repeat-containing protein 53 homolog OS=Dictyos... [more]
WDR53_BOVIN3.077e-1233.77WD repeat-containing protein 53 OS=Bos taurus GN=W... [more]
WDR53_HUMAN2.605e-1131.29WD repeat-containing protein 53 OS=Homo sapiens GN... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA38CG10RM2 IVIA1 Citrus clementina cDNA clone IC0AAA38CG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878178 ID=FC878178; Name=FC878178; organism=Citrus clementina; type=EST; length=907bp
CGACGGGTCGGCACGAGTATGACGGAGGCAGAGGCGAAGCCACGACGGTT
GAGAGGTCACAAGGCCACTGCCACGTGCTGCATAGCCTCACGTGACCGCC
CTGGCTTTGTTGCCACTTCTGGGGAGGATGGTTGCGTTTGCTGGTTTGAT
TTGAGAAGCAAAGACGTGCAGCTTGTCACTGATGTTGGAAATGGACCTGT
TACTTCACTTTGTTTCAAGTCAGGGAATGAAGACATTATCTACGTTTCCT
CGGGAAAGGAAGTCAAATCTTTTGATGTGCATATGCCTGCATCGTGGAGG
CCATTAGAGAGCTACAACTATAACAAAGAGGAGATAAATCAGATCGTGTG
CAATCCTAAGTCATCTTTTCTTGCTTGCGCAGATGATGGTGGTGATGTTA
AGATCATTGATATTCGCCAGCATTGCCTTTATAAAACACTGAGAGCTGGC
CATTCAAGTATCTGTAGCAGTGTGCAATTCATACCCTGGAAACCTTGGGA
AGGTAATATTTTTCAAGTTTATGGTTCTGGTTGATGTTTGGAACTGTATT
GCTTAAGTGTGAAATTTGTACAATTCTGCTATAAGTTGGGTCTGTTAGAC
CAAGTCACGAAGAAGATGACTTTTCATCTTTTACTTCAGCATAATCAATC
AAACATGCATCTTAAATACTCTGGTGTCTGTTTTTTTTCTTCTTCTTTTT
GTCCCCTTTTTGGGCAATCCTGACAGTCATTTCTGGAGGTCTGGATTCGA
AGCTTGTCATGTGGGACTTCTCCAAAGGGCGTCCAAACAAGATTGTGAAT
TTTGGTACGATACGAGTCTTAATTTTGTTTGCCTTGTAATATTTCATGAT
ATATGTACACAAGTTTTATGTCTTTTAAAAGTATGGTTGGGTGTGCCTCT
CCCTTGG
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