FC878207

Overview
NameFC878207
Unique NameFC878207
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length869
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878207_ssr125 microsatellite FC878207_ssr125:125..136. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig2991 contig Ccv1_Contig2991:80..948. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_SYNS3 (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain CC9311) GN=rlmN PE=3 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 2.018e-66
Identity = 128/243 (52.67%), Postives = 173/243 (71.19%), Query Frame = 3
Query:  159 NVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKL------QSTLAISLHAPNQKLRESIVPSAKSYPLE 869
            + LLG S+ EL++ AV  GQ ++RG+QLH  +Y + V++++    LP+++R  LQ  G +VGRL       +AD T KLL+  ED   +ETVGIP +      RLT CVSSQVGCP+ C FCATGKGG  R+L+ HEIV QVL+I E+ + R ++VVFMGMGEP+LN+++VLE+ RCLN D+ IGQR IT+STVGVP+T+ +LA   L      Q TLA+SLHAPNQ LRE ++P+AK+YP +
Sbjct:    3 SALLGRSKSELEEWAVAQGQPAFRGRQLHDWLYAKGVRDLQGITVLPKAWRASLQNEGVSVGRLHEQERRVSADATTKLLLGTEDGETLETVGIPTDQ-----RLTVCVSSQVGCPMACRFCATGKGGLQRSLAGHEIVAQVLSIREVMERRPSHVVFMGMGEPLLNIEAVLESIRCLNDDLGIGQRRITVSTVGVPHTLPRLADLALKQLGRAQFTLAVSLHAPNQALREELIPTAKTYPYD 240          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_THEEB (Ribosomal RNA large subunit methyltransferase N OS=Thermosynechococcus elongatus (strain BP-1) GN=rlmN PE=3 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 3.806e-65
Identity = 129/235 (54.89%), Postives = 163/235 (69.36%), Query Frame = 3
Query:  162 VLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPL 866
            VLLG S  EL+      GQ  YRG+QLH  +Y++  + ++     P+ +R  L +    +GR  I     A DGTVKLL+ L D   IETVGIP  D     RLT CVSSQVGCP+ C FCATGKGG+ RNL+ HEI+ QVL I+     RV++VVFMGMGEP+LNL +VL+A  CLN+D+ IGQR ITISTVG+P  I++LA ++LQ+TLA+SLHAPNQ LRE ++PSAK YPL
Sbjct:    2 VLLGRSAAELKAWVEAQGQPGYRGQQLHQWLYRKGARSLQEITVFPKQWRAALADV--EIGRSEIRYRHDAQDGTVKLLLALADGETIETVGIPSSD-----RLTVCVSSQVGCPMACDFCATGKGGYRRNLACHEILDQVLTIQSEMGRRVSHVVFMGMGEPLLNLPAVLQAITCLNRDIGIGQRHITISTVGIPQQIQRLAQHQLQTTLAVSLHAPNQALREQLIPSAKHYPL 229          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_ACAM1 (Ribosomal RNA large subunit methyltransferase N OS=Acaryochloris marina (strain MBIC 11017) GN=rlmN PE=3 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 6.492e-65
Identity = 129/235 (54.89%), Postives = 165/235 (70.21%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869
            LLG S+ +L   A    Q +YRG+Q+H  IY++ V  + +   LP+ +R ++ +    VGR  I     A DGTVK L+KL D ++IETVGIP +      RLT CVSSQVGCP+ C FCATGKG + RNL+ HEIV QVL ++E F+ RV NVVFMGMGEP+LNL+ VL A R LN+DV IGQR +T+STVG+P  I KLA ++LQ TLA+SLHA NQ++R  +VPSAK YPLE
Sbjct:   13 LLGASKAQLTHWAQTYQQPAYRGQQVHQWIYQKGVHSLSDITVLPKQWRTEIADI--PVGRSQIHHRSAAQDGTVKYLLKLADGQIIETVGIPTQK-----RLTVCVSSQVGCPMGCDFCATGKGEYQRNLACHEIVDQVLTVQEDFQQRVGNVVFMGMGEPLLNLEQVLAAVRSLNQDVGIGQRSLTVSTVGIPKQILKLAQHQLQITLAVSLHASNQRIRTQLVPSAKHYPLE 240          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_PROM4 (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus (strain MIT 9211) GN=rlmN PE=3 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.446e-64
Identity = 126/242 (52.07%), Postives = 169/242 (69.83%), Query Frame = 3
Query:  162 VLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASY------KLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869
            VLLG +  +L+KLA + G+ ++RG+Q+H  +Y++ V+++E    LP+ +R  L + G   GRL   + + A DGT+KLL++  D   IE VGIP        RLT CVSSQVGC + C FCATGKGGF R+L  HEIV QVL+I E F  R +++VFMGMGEP+LN++SVLE+  CLN D+ IGQR IT+STVGV NT+ +LA        ++Q TLA+SLHAPNQ LRE +VPSAK YP++
Sbjct:   12 VLLGQNVAKLEKLAQEYGEPAFRGRQIHEWLYQKGVRKLEEISVLPKLWRTTLSDQGVCTGRLEEVKRLVANDGTIKLLLETSDRESIEAVGIPTNS-----RLTTCVSSQVGCSMGCRFCATGKGGFQRSLEVHEIVDQVLSIREAFDRRPSHIVFMGMGEPLLNIESVLESISCLNNDLGIGQRRITVSTVGVVNTLPQLAELALAKLGRVQFTLALSLHAPNQHLREMLVPSAKVYPIQ 248          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_SYNPX (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain WH8102) GN=rlmN PE=3 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 3.222e-64
Identity = 126/242 (52.07%), Postives = 164/242 (67.77%), Query Frame = 3
Query:  162 VLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKL------QSTLAISLHAPNQKLRESIVPSAKSYPLE 869
            +LLG S  EL+  AV  GQ+ +RG+QLH  +Y +  + +     LP+++R  L+E G  VGRL       AAD T KLL+  +D   IETVGIP +      RLT CVSSQVGCP+ C FCATGKGG  R+L +HEIV QVL++ E+   R +++VFMGMGEP+LN ++VL+A RCLN D+ IGQR IT+STVGVP T+ +LA   L      Q TLA+SLHAPNQ LRE ++P+A +YP E
Sbjct:    1 MLLGRSAAELESWAVAQGQKPFRGRQLHDWLYAKGARSLSEITVLPKAWRESLKEDGVEVGRLKEVHRSVAADATTKLLLSTDDGETIETVGIPTDQ-----RLTVCVSSQVGCPMACRFCATGKGGLQRSLRTHEIVDQVLSVREVMDRRPSHIVFMGMGEPLLNSQAVLDAIRCLNDDLGIGQRRITVSTVGVPKTLPQLAELALATLGRAQFTLAVSLHAPNQALREELIPTAHAYPYE 237          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_SYNS9 (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain CC9902) GN=rlmN PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 4.208e-64
Identity = 124/243 (51.03%), Postives = 165/243 (67.90%), Query Frame = 3
Query:  159 NVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASY------KLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869
            NVLLG S  EL+  AV  G +S+RG+Q+H  +Y + VK +     LP+ +R +L+   + VGRL +     AAD T KLL+  +D   IETVGIP +      RLT C+SSQVGCP+ C FCATGK G  R+L++HEIV QVL++ E    R ++VVFMGMGEP+LN ++VLE  RCLN D+ IGQR IT+STVGVP T+ +LA        + Q TLA+SLHAPNQ+LRE ++P+A +YP +
Sbjct:    3 NVLLGRSAAELEDWAVAQGHKSFRGRQIHDWLYNKGVKSLSEISALPKQWRTELEAQTFRVGRLKLVHQSVAADATTKLLLATDDGETIETVGIPTDQ-----RLTVCISSQVGCPMACRFCATGKSGLQRSLATHEIVDQVLSVREAMDRRPSHVVFMGMGEPLLNSEAVLETIRCLNTDLGIGQRRITVSTVGVPKTLPQLAELAMEKLGRAQFTLAVSLHAPNQQLREELIPTAHAYPYD 240          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_PROM1 (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus (strain NATL1A) GN=rlmN PE=3 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 7.177e-64
Identity = 122/251 (48.61%), Postives = 174/251 (69.32%), Query Frame = 3
Query:  135 SRAPRVDANV-LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASY------KLQSTLAISLHAPNQKLRESIVPSAKSYPL 866
            ++ P++ +N  LLG+S ++L++ A   G++S+RG+Q+H  IY+R  K +++   LP+ +R+ L   G  +GRL     V A D T+KLL+   D  ++ETVGIP +      RLT CVSSQ+GCP+ C FCATGKGG +R+L  +EIV QV+++ E    R T+VVFMGMGEP+LN+++VL++  CL  D+ IGQR IT+STVG+PNT+  LA        ++Q TLA+SLHAPNQ LRE I+PSA SYP+
Sbjct:    2 TKLPKLSSNSSLLGLSSEDLEEFARQEGEKSFRGRQIHEWIYQRGAKSLDSISVLPKKWRDSLVRKGIQIGRLDEINRVVAEDETLKLLMGTFDGEIVETVGIPTDK-----RLTVCVSSQIGCPMGCKFCATGKGGLNRSLDVNEIVDQVISVRETMNRRPTHVVFMGMGEPLLNIQNVLDSIECLTSDIGIGQRKITVSTVGIPNTLSDLAKLAQDRLGRVQFTLAVSLHAPNQTLRELIIPSASSYPI 247          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_ANAVT (Ribosomal RNA large subunit methyltransferase N OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rlmN PE=3 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 7.177e-64
Identity = 130/259 (50.19%), Postives = 174/259 (67.18%), Query Frame = 3
Query:   93 VSVTPRRKLSVSSSSRAPRVDANVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869
            +S TP  +L+ SS  + P +    LLG S  EL       GQ +YRGKQLH  IY + V+ + +     + +R  + +    +GR  I     A+DGTVK L++L D  ++ETVGIP +      RLT CVS+QVGCP+ C FCATGKGG+ RNL  HEIV QVL ++E F+ RV++VVFMGMGEP+LN ++VL A R LN+DV IGQR +T+STVG+ + I +LA + LQ TLA+SLHAPNQ LRE ++PSA+SY +E
Sbjct:    1 MSATPVTQLTPSSQPQQPCLP---LLGASVTELTSWVQQQGQPAYRGKQLHDWIYHKGVRSLTDISVFSKQWRAAVADV--PIGRSTIHHRSVASDGTVKYLLQLSDGEIVETVGIPTDK-----RLTVCVSTQVGCPMACDFCATGKGGYKRNLERHEIVDQVLTVQEDFQQRVSHVVFMGMGEPLLNTENVLAALRSLNQDVGIGQRSLTLSTVGIRDRISQLAEHHLQVTLAVSLHAPNQALREQLIPSARSYHIE 249          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_TRIEI (Ribosomal RNA large subunit methyltransferase N OS=Trichodesmium erythraeum (strain IMS101) GN=rlmN PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 9.374e-64
Identity = 125/234 (53.42%), Postives = 166/234 (70.94%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPL 866
            LLG+S  +L +     GQ +YRGKQL+  IY++  K + +     + +R ++  + + +GR  I     A D TVK L+KL D  +IETVGIP        RLT CVSSQVGCP+ C FCATGKGGFSRNL +HEI+ QVL ++E F+ RV+++VFMGMGEP+LN K+VL A R LN+D+ IGQR+ITIST G+ + I++LA +KLQ TLA+SLHA NQ+LRE ++PSAK YPL
Sbjct:   13 LLGLSLAKLTEWVQQQGQPAYRGKQLYQWIYQKGAKSLADITVFSKQWREEI--SNFPIGRSVIHHRSVAPDATVKYLLKLSDGNIIETVGIPTYK-----RLTVCVSSQVGCPMACDFCATGKGGFSRNLEAHEIIDQVLTVQEDFERRVSHIVFMGMGEPLLNTKNVLAAVRSLNQDLGIGQRLITISTSGIRDRIRQLAQHKLQVTLAVSLHASNQRLREHLIPSAKFYPL 239          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_SYNPW (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain WH7803) GN=rlmN PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 9.374e-64
Identity = 121/244 (49.59%), Postives = 168/244 (68.85%), Query Frame = 3
Query:  156 ANVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASY------KLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869
            +  LLG+   EL++ AV  GQ ++RG+QLH  +Y +   ++++   LP+++R  LQ+ G  +GRL       A D T KLL+  +D   +ETVGIP +      RLT CVSSQVGCP+ C FCATGKGG  R+L +HEIV QVL++ E+ + R ++VVFMGMGEP+LN+++VL+A RCLN D+ IGQR IT+STVGVP T+ +LA        + Q TLA+SLHAPNQ LRE ++P+A +YP +
Sbjct:    7 SKTLLGLGASELERWAVSQGQSAFRGRQLHDWLYAKGACDLQDITVLPKAWRASLQDKGVIIGRLKEQDRKVAGDATTKLLLGTDDGETLETVGIPTDQ-----RLTVCVSSQVGCPMACRFCATGKGGLQRSLYTHEIVAQVLSVREVMERRPSHVVFMGMGEPLLNIEAVLDAIRCLNDDLGIGQRRITVSTVGVPRTLPRLAELAMERLGRAQFTLAVSLHAPNQSLREELIPTAHAYPYD 245          
The following BLAST results are available for this feature:
BLAST of FC878207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RLMN_SYNS32.018e-6652.67Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_THEEB3.806e-6554.89Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_ACAM16.492e-6554.89Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_PROM41.446e-6452.07Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SYNPX3.222e-6452.07Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SYNS94.208e-6451.03Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_PROM17.177e-6448.61Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_ANAVT7.177e-6450.19Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_TRIEI9.374e-6453.42Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SYNPW9.374e-6449.59Ribosomal RNA large subunit methyltransferase N OS... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA6DF09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA6DF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878207 ID=FC878207; Name=FC878207; organism=Citrus clementina; type=EST; length=869bp
AAAGGATAATTGCCGTTTCAATGACTCTGCTTCGGCAAGTGATCTCTGCT
CCCGTAGCACATGCGGTGGTGCTTTCTCGCTCCTGCCTTGCAGTTTCTGT
GACCCCGCGGCGCAAGTTATCTGTTTCTTCTTCTTCACGTGCCCCTCGCG
TGGACGCCAACGTGCTCCTTGGCATGTCCGAGCAGGAGCTTCAAAAACTC
GCCGTCGACCTCGGCCAGCAAAGTTACAGAGGGAAGCAGCTTCATCATCT
AATTTACAAAAGAAAGGTCAAAGAAATTGAAAATTTTATTCAACTGCCTC
AGTCCTTCAGAAATGATCTCCAAGAAGCTGGATGGACGGTTGGTCGCTTG
CCGATTTTTCGCACGGTCACTGCAGCTGATGGAACTGTTAAATTGCTAAT
AAAGCTGGAAGACAACAGATTGATTGAAACTGTTGGCATACCAGTTGAAG
ACGAGAAAGGTCCCATGCGTCTTACCGCTTGTGTGTCATCGCAGGTAGGT
TGCCCATTGCGTTGTTCGTTTTGTGCCACTGGAAAGGGAGGATTTTCAAG
AAATCTTTCAAGCCATGAAATTGTTGGGCAGGTGTTAGCAATTGAAGAGA
TCTTCAAGCATAGGGTGACAAACGTAGTGTTCATGGGAATGGGCGAGCCA
ATGTTGAACCTAAAGTCTGTGCTTGAAGCACATCGATGTTTGAATAAGGA
TGTGCAAATTGGACAAAGGATGATTACAATTTCCACTGTGGGGGTTCCGA
ACACAATTAAAAAGTTGGCCTCTTACAAACTTCAGTCAACATTGGCTATC
AGCTTACATGCTCCAAACCAGAAACTGAGGGAATCAATTGTGCCAAGTGC
AAAGTCCTATCCTCTTGAA
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