FC878217

Overview
NameFC878217
Unique NameFC878217
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length852
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878217_ssr234 microsatellite FC878217_ssr234:234..254. BLAST: Citrus ESTs to Prunus persica proteins V1
FC878217_ssr405 microsatellite FC878217_ssr405:405..416. BLAST: Citrus ESTs to Prunus persica proteins V1
FC878217_ssr624 microsatellite FC878217_ssr624:624..635. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12306 contig Ccv1_Contig12306:7..858. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878217 vs. ExPASy Swiss-Prot
Match: Y4814_ORYSJ (B3 domain-containing protein Os04g0581400 OS=Oryza sativa subsp. japonica GN=Os04g0581400 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 8.588e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 3
Query:  744 IEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLD 851
            IEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLD
Sbjct:  104 IEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLD 139          
BLAST of FC878217 vs. ExPASy Swiss-Prot
Match: Y3209_ORYSJ (B3 domain-containing protein Os03g0120900 OS=Oryza sativa subsp. japonica GN=Os03g0120900 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.588e-14
Identity = 35/37 (94.59%), Postives = 37/37 (100.00%), Query Frame = 3
Query:  741 SIEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLD 851
            ++EKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLD
Sbjct:   30 AVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLD 66          
BLAST of FC878217 vs. ExPASy Swiss-Prot
Match: NGA3_ARATH (B3 domain-containing transcription factor NGA3 OS=Arabidopsis thaliana GN=NGA3 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.913e-13
Identity = 43/85 (50.59%), Postives = 49/85 (57.65%), Query Frame = 3
Query:  606 MDLSLGXXXXXXEDQPHKHSGNINN---ANVANXXXXXXXXXXXXMYRSIEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLD 851
            MDLSL        DQ       + +   A+ ++            M    EKEHMFDKVVTPSDVGKLNRLVIPKQHAE+YFPLD
Sbjct:    1 MDLSLAPTTTTSSDQEQDRDQELTSNIGASSSSGPSGNNNNLPMMMIPPPEKEHMFDKVVTPSDVGKLNRLVIPKQHAERYFPLD 85          
BLAST of FC878217 vs. ExPASy Swiss-Prot
Match: NGA2_ARATH (B3 domain-containing transcription factor NGA2 OS=Arabidopsis thaliana GN=NGA2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.263e-13
Identity = 34/37 (91.89%), Postives = 37/37 (100.00%), Query Frame = 3
Query:  741 SIEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLD 851
            S+E+EHMFDKVVTPSDVGKLNRLVIPKQHAE+YFPLD
Sbjct:   16 SMEREHMFDKVVTPSDVGKLNRLVIPKQHAERYFPLD 52          
BLAST of FC878217 vs. ExPASy Swiss-Prot
Match: Y2835_ORYSJ (B3 domain-containing protein Os02g0683500 OS=Oryza sativa subsp. japonica GN=Os02g0683500 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.567e-13
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 3
Query:  744 IEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLD 851
            +EKEHMFDKVVTPSDVGKLNRLVIPKQ+AEKYFPLD
Sbjct:   90 VEKEHMFDKVVTPSDVGKLNRLVIPKQYAEKYFPLD 125          
BLAST of FC878217 vs. ExPASy Swiss-Prot
Match: Y1071_ORYSJ (Putative B3 domain-containing protein Os10g0537100 OS=Oryza sativa subsp. japonica GN=Os10g0537100 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.270e-13
Identity = 33/36 (91.67%), Postives = 36/36 (100.00%), Query Frame = 3
Query:  744 IEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLD 851
            +EKEHMF+KVVTPSDVGKLNRLVIPKQHAE+YFPLD
Sbjct:   29 VEKEHMFEKVVTPSDVGKLNRLVIPKQHAERYFPLD 64          
BLAST of FC878217 vs. ExPASy Swiss-Prot
Match: NGA1_ARATH (B3 domain-containing transcription factor NGA1 OS=Arabidopsis thaliana GN=NGA1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.038e-12
Identity = 31/35 (88.57%), Postives = 35/35 (100.00%), Query Frame = 3
Query:  747 EKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLD 851
            ++EHMFDKVVTPSDVGKLNRLVIPKQHAE++FPLD
Sbjct:   30 DREHMFDKVVTPSDVGKLNRLVIPKQHAERFFPLD 64          
BLAST of FC878217 vs. ExPASy Swiss-Prot
Match: NGA4_ARATH (B3 domain-containing transcription factor NGA4 OS=Arabidopsis thaliana GN=NGA4 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.339e-11
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 3
Query:  735 YRSIEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLD 851
            Y S  +EHMFDKV+TPSDVGKLNRLVIPKQHAE +FPL+
Sbjct:   22 YSSERREHMFDKVLTPSDVGKLNRLVIPKQHAENFFPLE 60          
BLAST of FC878217 vs. ExPASy Swiss-Prot
Match: Y8577_ORYSJ (Putative B3 domain-containing protein Os08g0157700 OS=Oryza sativa subsp. japonica GN=Os08g0157700 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.805e-11
Identity = 29/33 (87.88%), Postives = 33/33 (100.00%), Query Frame = 3
Query:  747 EKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFP 845
            E+EHMFDKVVTPSDVGKLNRLV+PKQHAE++FP
Sbjct:   66 EREHMFDKVVTPSDVGKLNRLVVPKQHAERFFP 98          
BLAST of FC878217 vs. ExPASy Swiss-Prot
Match: Y1160_ORYSJ (B3 domain-containing protein Os11g0156000 OS=Oryza sativa subsp. japonica GN=Os11g0156000 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.887e-11
Identity = 30/34 (88.24%), Postives = 33/34 (97.06%), Query Frame = 3
Query:  747 EKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPL 848
            EKEHMF+K +TPSDVGKLNRLVIPKQHAE+YFPL
Sbjct:   33 EKEHMFEKPLTPSDVGKLNRLVIPKQHAERYFPL 66          
The following BLAST results are available for this feature:
BLAST of FC878217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
Y4814_ORYSJ8.588e-14100.00B3 domain-containing protein Os04g0581400 OS=Oryza... [more]
Y3209_ORYSJ8.588e-1494.59B3 domain-containing protein Os03g0120900 OS=Oryza... [more]
NGA3_ARATH1.913e-1350.59B3 domain-containing transcription factor NGA3 OS=... [more]
NGA2_ARATH3.263e-1391.89B3 domain-containing transcription factor NGA2 OS=... [more]
Y2835_ORYSJ5.567e-1394.44B3 domain-containing protein Os02g0683500 OS=Oryza... [more]
Y1071_ORYSJ7.270e-1391.67Putative B3 domain-containing protein Os10g0537100... [more]
NGA1_ARATH8.038e-1288.57B3 domain-containing transcription factor NGA1 OS=... [more]
NGA4_ARATH2.339e-1179.49B3 domain-containing transcription factor NGA4 OS=... [more]
Y8577_ORYSJ6.805e-1187.88Putative B3 domain-containing protein Os08g0157700... [more]
Y1160_ORYSJ8.887e-1188.24B3 domain-containing protein Os11g0156000 OS=Oryza... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA33CF10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA33CF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878217 ID=FC878217; Name=FC878217; organism=Citrus clementina; type=EST; length=852bp
CAATTTTCATGGGTATCTATCCATCCATCTATCTCTCTTTAAGAACCCAA
AAAGCAAAACAAATTTTTTCGCTTCACTTGTTTTTCCAAGTGACTAATAT
TTGCTTCTTTAATTTCCTTCTAACCGAGCTCTTCTCATATAATATGTGTC
CACTACAACAAACAACTTGGTGCTTTAATTTGTTGAATCTTCCATGGCCC
TGTCTTGTTTAGGGTTTTGGGTTTTCTTGGTCAAAGAAGAAGAAGAAGAA
GAAGGCAGCGAGTCTCTCGTCCGTTTTTGCATTGAGAGTTATCTCTGTGT
TATTTGGCTCTTCAAGGATCTGACACAGCAAGATCATATATAGCAAGAAT
TCACAGCAGGTGTGGATCATGATGAACTTTGTGCAAGAAGAAAAAGGTAA
TAGCAATAATAATAATGAAGAAGATCAAGATGAAGATCATCAGAAAGAGA
GAATTAAGCTCCCTTTTTCCGTTTCTTCTTCATCTTCATCTGTTTCTTCT
TCAAAGTACAAAGCTTTTGTCCCGCATCACCACCAAAACTCATGGCTGCT
GGGCCCCATTGATTCTCAAGAAGCAGCCACCAATTTTGACAACAGAGAAG
ACCTCATGGACTTATCACTTGGAAACAACAACAACAATAATGAAGATCAA
CCACACAAACACAGCGGTAATATAAATAATGCTAATGTTGCTAACGGTAC
TGGTAGTAGTACCACTGGTGAGAGCAGTGGCATGTATAGGTCCATCGAGA
AAGAACACATGTTCGATAAAGTTGTCACACCAAGCGATGTGGGCAAACTA
AACCGACTTGTGATACCGAAACAACACGCCGAGAAGTACTTCCCGCTTGA
CT
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