FC878218

Overview
NameFC878218
Unique NameFC878218
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length924
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13627 contig Ccv1_Contig13627:64..989. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RR5_SPIOL (30S ribosomal protein S5, chloroplastic OS=Spinacia oleracea GN=rps5 PE=1 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 2.785e-69
Identity = 149/287 (51.92%), Postives = 178/287 (62.02%), Query Frame = 3
Query:  132 RLPKLTLSTVLVRASESDKPN----------------------GIVFDDFNNPDEDAAVFXXXXXXXXXXXXXSFDELPMETEDEIAAAYEELYGPAYAGVSVLGNDVYVMDSKAKKTSAFG-KTKKEKVKDGFEEXXXXXXXXXXXXXXXXXLKFRAIXXXXXXXXXXXXXXXXXXXXXXXXQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923
            R+P    +T L+  S S KP                        I F + +NPDE+   F             + DE P E+E+EIA AYEELYG AY+G S+LGNDVY MDSK KK + FG K+KKEK++DGFEE                 ++FRAI                        QK+AVDARRNI+TVPMTKYLTFPHR++ D+GAA+VMLRPAAPGTGVIAGGAVR VLEMAGVENALGKQLGSNNALNNARAT+VAVQ M+Q+ +V+R+RG PMEE
Sbjct:   20 RIPLFPTTTTLLSLSSSSKPLFLSLSSTRSFPTHLYCIKKDDIDITFFEQDNPDEEIT-FDPPEKPEGYIPPRAVDEPPFESEEEIALAYEELYGAAYSGESLLGNDVYAMDSKIKKATGFGSKSKKEKIRDGFEENVVQVRRVTKVVKGGKHMRFRAIVVVGDKKGQVGVGVGKAKEVVSAVQKAAVDARRNIITVPMTKYLTFPHRNEADYGAARVMLRPAAPGTGVIAGGAVRTVLEMAGVENALGKQLGSNNALNNARATIVAVQTMRQFSDVARDRGIPMEE 305          
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RR5_ARATH (30S ribosomal protein S5, chloroplastic OS=Arabidopsis thaliana GN=rps5 PE=1 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 2.785e-69
Identity = 148/258 (57.36%), Postives = 171/258 (66.28%), Query Frame = 3
Query:  153 STVLVRASESDKPNGIVFDDFNNPDEDAAVFXXXXXXXXXXXXXSFDELPMETEDEIAAAYEELYGPAYAGVSVLGNDVYVMDSKAKKTSAFG-KTKKEKVKDGFEEXXXXXXXXXXXXXXXXXLKFRAIXXXXXXXXXXXXXXXXXXXXXXXXQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923
            S  LV+AS +D    I F+D         VF              FDE   ETE+EIA A+EELYGPAY+G S+LG D+YVMDSK KK+S  G K KK+K++DGFEE                 LKFRAI                        QKSA+DARRNIV VPMTKY TFPHRS+GD+GAAKVMLRPA+PGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARAT+ AVQ+M+Q+R+V++ERG PMEE
Sbjct:   44 SLTLVKASSTDTET-IFFEDETPEITANVVFDPPIAPEGFVSPPYFDEGSDETEEEIATAFEELYGPAYSGESMLGKDIYVMDSKHKKSSGIGGKPKKDKIRDGFEERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIVQVPMTKYSTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATLAAVQQMRQFRDVAQERGIPMEE 300          
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RR5_PORYE (30S ribosomal protein S5, chloroplastic OS=Porphyra yezoensis GN=rps5 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.709e-26
Identity = 68/164 (41.46%), Postives = 94/164 (57.32%), Query Frame = 3
Query:  432 KTKKEKVKD-GFEEXXXXXXXXXXXXXXXXXLKFRAIXXXXXXXXXXXXXXXXXXXXXXXXQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPME 920
            K  K K KD G+EE                 L FR I                        +K   DA++++VTVP+TK  + PH  +G  GAAKV+LRP+APG+GVIAGG+VR VLE++GV+N L KQLGSNN LNNARA +  + +++ + E +++RG P+E
Sbjct:    6 KQSKGKDKDSGWEERVVQVKRVTKVVKGGKKLSFRVILVIGNEQGQVGVGVGKASDVIGAVKKGVTDAKKHLVTVPLTKSNSIPHPINGISGAAKVILRPSAPGSGVIAGGSVRTVLELSGVQNILAKQLGSNNTLNNARAVLNGLTQLRTFSEAAKDRGVPIE 169          
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RR5_PORPU (30S ribosomal protein S5, chloroplastic OS=Porphyra purpurea GN=rps5 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.808e-26
Identity = 67/164 (40.85%), Postives = 94/164 (57.32%), Query Frame = 3
Query:  432 KTKKEKVKD-GFEEXXXXXXXXXXXXXXXXXLKFRAIXXXXXXXXXXXXXXXXXXXXXXXXQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPME 920
            K  K K KD G+EE                 L FR I                        +K   DA++++VTVP+TK  + PH  +G  GAA+V+LRP+APG+GVIAGG+VR VLE++GV+N L KQLGSNN LNNARA +  + +++ + E +++RG P+E
Sbjct:    6 KQGKSKEKDNGWEERVVQVKRVTKVVKGGKKLSFRVILVVGNEQGQVGVGVGKASDVIGAVKKGVTDAKKHLVTVPLTKSNSIPHPINGISGAAQVILRPSAPGSGVIAGGSVRTVLELSGVQNILAKQLGSNNTLNNARAVLNGLTQLRTFSEAAKDRGVPIE 169          
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_SYNP2 (30S ribosomal protein S5 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rpsE PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.974e-26
Identity = 60/103 (58.25%), Postives = 79/103 (76.70%), Query Frame = 3
Query:  612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPME 920
            +K   DA++++V VP+TK  T  HR +G  G AKVM+RPAAPGTGVIAGGAVR VLE+AGV+N L KQLGS++ LNNARATV A+  ++ +  V++ERG  +E
Sbjct:   67 RKGVSDAKKHVVDVPLTKTNTITHRINGVAGGAKVMMRPAAPGTGVIAGGAVRTVLELAGVKNILAKQLGSSSPLNNARATVDALGNLRSFSSVAQERGVSIE 169          
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_NOSP7 (30S ribosomal protein S5 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rpsE PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.496e-26
Identity = 57/103 (55.34%), Postives = 76/103 (73.79%), Query Frame = 3
Query:  612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPME 920
            +K   D +++++ +P+TK  + PH  DG  G AKV++RPAAPGTGVIAGGAVR VLE+AGV N L KQLGSNN LNNARA V A+  ++   EV+ +RG P++
Sbjct:   69 KKGVADGKKHLIDIPITKSNSIPHPIDGVGGGAKVIMRPAAPGTGVIAGGAVRTVLELAGVRNVLAKQLGSNNPLNNARAAVNALSTLRTLSEVAEDRGIPIQ 171          
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_ANAVT (30S ribosomal protein S5 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rpsE PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.496e-26
Identity = 58/104 (55.77%), Postives = 76/104 (73.08%), Query Frame = 3
Query:  612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923
            +K   D +++++ +P+TK  + PH  DG  G AKVM+RPAAPGTGVIAGGAVR VLE+AGV N L KQLGSNN LNNARA V A+  ++   EV+ +RG  +E+
Sbjct:   68 KKGVADGKKHLIDIPITKSNSIPHPIDGVGGGAKVMMRPAAPGTGVIAGGAVRTVLELAGVRNVLAKQLGSNNPLNNARAAVNALSTLRTLAEVAEDRGIAIEK 171          
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_ANASP (30S ribosomal protein S5 OS=Anabaena sp. (strain PCC 7120) GN=rpsE PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.496e-26
Identity = 58/104 (55.77%), Postives = 76/104 (73.08%), Query Frame = 3
Query:  612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923
            +K   D +++++ +P+TK  + PH  DG  G AKVM+RPAAPGTGVIAGGAVR VLE+AGV N L KQLGSNN LNNARA V A+  ++   EV+ +RG  +E+
Sbjct:   68 KKGVADGKKHLIDIPITKSNSIPHPIDGVGGGAKVMMRPAAPGTGVIAGGAVRTVLELAGVRNVLAKQLGSNNPLNNARAAVNALSTLRTLAEVAEDRGIAIEK 171          
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_CYAP7 (30S ribosomal protein S5 OS=Cyanothece sp. (strain PCC 7424) GN=rpsE PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.108e-25
Identity = 55/103 (53.40%), Postives = 78/103 (75.73%), Query Frame = 3
Query:  612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPME 920
            +K   D ++ ++ VP+TK  + PH ++G  G A V++RPAAPGTGVIAGGAVR VLE+AGV+N L KQLGS+N LNNARA + A++ ++ + EV++ER  P+E
Sbjct:   67 RKGVADGKKQLIEVPLTKASSIPHLTNGASGGASVIMRPAAPGTGVIAGGAVRTVLELAGVKNILAKQLGSDNPLNNARAAINALETLRTFSEVAKERDVPLE 169          
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_THEEB (30S ribosomal protein S5 OS=Thermosynechococcus elongatus (strain BP-1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.447e-25
Identity = 56/103 (54.37%), Postives = 79/103 (76.70%), Query Frame = 3
Query:  612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPME 920
            +K   D +++++ VP+TK  + PH + G+ GAA+VM+RPAAPGTGVIAGG+VR VLE+AGV N L KQLGS+N LNNARA + A+  ++ ++EV+ ER  P+E
Sbjct:   67 RKGVADGKKHLIDVPITKSNSIPHPTFGEGGAARVMIRPAAPGTGVIAGGSVRTVLELAGVRNVLAKQLGSSNPLNNARAALEALAALRTFQEVAEEREIPIE 169          
The following BLAST results are available for this feature:
BLAST of FC878218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR5_SPIOL2.785e-6951.9230S ribosomal protein S5, chloroplastic OS=Spinaci... [more]
RR5_ARATH2.785e-6957.3630S ribosomal protein S5, chloroplastic OS=Arabido... [more]
RR5_PORYE1.709e-2641.4630S ribosomal protein S5, chloroplastic OS=Porphyr... [more]
RR5_PORPU3.808e-2640.8530S ribosomal protein S5, chloroplastic OS=Porphyr... [more]
RS5_SYNP24.974e-2658.2530S ribosomal protein S5 OS=Synechococcus sp. (str... [more]
RS5_NOSP76.496e-2655.3430S ribosomal protein S5 OS=Nostoc punctiforme (st... [more]
RS5_ANAVT6.496e-2655.7730S ribosomal protein S5 OS=Anabaena variabilis (s... [more]
RS5_ANASP6.496e-2655.7730S ribosomal protein S5 OS=Anabaena sp. (strain P... [more]
RS5_CYAP71.108e-2553.4030S ribosomal protein S5 OS=Cyanothece sp. (strain... [more]
RS5_THEEB1.447e-2554.3730S ribosomal protein S5 OS=Thermosynechococcus el... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA55AC08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA55AC08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878218 ID=FC878218; Name=FC878218; organism=Citrus clementina; type=EST; length=924bp
TTACATACACATCACCAATGGCAACAACAGCATCAGCAACAAGAGCAACC
CTTTCTCTCTCGTCATTGTCTTTGTCTCTATCTCTTCACTCGACTCCCCG
CCTCTCATTCCTCTCCACTGCAAAACTCACCAGGCTCCCAAAACTCACCC
TCTCGACCGTCCTCGTCAGAGCCTCCGAATCCGACAAACCAAACGGCATC
GTTTTCGACGACTTCAACAACCCAGATGAAGACGCCGCCGTTTTCGACCC
ACCGACGCCCCCGGAGGATTACACTCCCCCGCCCTCCTTCGACGAGCTCC
CAATGGAAACCGAGGACGAAATTGCCGCTGCTTACGAAGAATTGTACGGA
CCCGCGTACGCGGGAGTCAGCGTCTTGGGAAATGATGTTTATGTGATGGA
CTCGAAGGCGAAAAAGACGAGTGCTTTTGGGAAAACGAAGAAGGAGAAAG
TGAAGGATGGGTTTGAAGAAAGAGTGGTTCAAGTCAGAAGAGTGACGAAG
GTGGTCAAAGGAGGGAAGCAGTTGAAGTTTAGAGCTATTGTTGTGGTTGG
TGATAAGAAAGGCCAAGTTGGTGTTGGCGTTGCCAAAGCTAAAGAAGTTA
TTGCTGCCGTACAGAAATCCGCCGTTGATGCTAGGAGGAATATTGTTACT
GTCCCTATGACTAAGTACTTGACTTTCCCACACAGATCTGATGGTGATTT
TGGGGCGGCTAAGGTGATGCTCAGACCTGCTGCTCCTGGTACTGGAGTGA
TTGCTGGAGGTGCTGTTAGAATTGTTCTCGAAATGGCAGGTGTTGAGAAT
GCTTTGGGGAAGCAACTTGGGAGTAACAATGCCCTCAACAATGCTAGAGC
AACGGTTGTTGCAGTGCAGAAAATGAAGCAGTGGCGTGAAGTTTCTCGTG
AACGCGGGAATCCAATGGAAGAAT
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