FC878225
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC878225 vs. ExPASy Swiss-Prot
Match: UBAX1_ARATH (UBA and UBX domain-containing protein At4g15410 OS=Arabidopsis thaliana GN=At4g15410 PE=2 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 4.632e-42 Identity = 96/185 (51.89%), Postives = 116/185 (62.70%), Query Frame = 2 Query: 23 ASRDKKPAKPSSSR-------AGGIRTLSDLNRRSGPXXXXXXXAPQEYYTGGEKSGMLVQDPSKGDPNDVDAIFNQAKELGAVEGPLEHLXXXXXXXXFTGTARLLSGETVPSAPQQ-----PEPIVHNIVFWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNLIRR 541 A +K+ PS R AG IRT +DLNR EYYTGG+KSGM+VQDP K DVD +F+QA++ AV+ P+E FTG ARLLSGE V S+PQQ P+ I+H I FW NGFTVNDGPLR DPENA+F+ SI +SECP ELEPADK+ VHV+L+RR Sbjct: 111 AGENKETENPSGIRSSRSRQHAGNIRTFADLNRSPADGEGSDSDEANEYYTGGQKSGMMVQDPKK--VKDVDELFDQARQ-SAVDRPVE--PSRSASTSFTGAARLLSGEAVSSSPQQQQQEQPQRIMHTITFWLNGFTVNDGPLRGFSDPENAAFMNSISRSECPSELEPADKKIPVHVDLVRR 290 HSP 2 Score: 72.7886 bits (177), Expect = 2.928e-12 Identity = 38/64 (59.38%), Postives = 46/64 (71.88%), Query Frame = 1 Query: 691 EPEKHHVPFQGVGRTLGSS-STAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTR 879 EP K PFQGVGRTLG+S S ++S P S P+N A + S GLVVD P+TS+Q+RLADGTR Sbjct: 296 EPPKPKNPFQGVGRTLGASGSGSSSAPQASSAPMNVAPAPSRGLVVDPAAPTTSIQLRLADGTR 359
BLAST of FC878225 vs. ExPASy Swiss-Prot
Match: NSF1C_DICDI (NSFL1 cofactor p47 homolog OS=Dictyostelium discoideum GN=nsfl1c PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 5.701e-16 Identity = 56/167 (33.53%), Postives = 81/167 (48.50%), Query Frame = 2 Query: 50 PSSSRAGGIRTLSDLNRRS------GPXXXXXXXAPQEYYTGGEKSGMLVQDPSK-----GDPNDVDAIFNQAKELGAV---EGPLEHLXXXXXXXXFTGTARLLSGETVPSAPQQPEP----IVHNIVFWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELE 496 P+ R GGIRTLSD N Q+Y+TGGEKSG++V+ K G + V+ +F+ AK GAV E +E G G S P++ +P + + FW GFT++DGPLR+ D+PEN L+ I++ P+EL+ Sbjct: 93 PAGGRVGGIRTLSDFNNDDHDDHDHSDGDDDEDDRSQQYFTGGEKSGLVVESAPKKGKNGGSGDIVNDVFDSAKRHGAVASNEKKVEKPDSFDSVGYQLGATD--QGNRNVSKPKEKDPNSQVVEVKVTFWNQGFTIDDGPLRKYDNPENKELLDDIQRGIVPRELQ 257
BLAST of FC878225 vs. ExPASy Swiss-Prot
Match: UBX1_EMENI (UBX domain-containing protein 1 OS=Emericella nidulans GN=ubx1 PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 8.233e-15 Identity = 59/191 (30.89%), Postives = 81/191 (42.41%), Query Frame = 2 Query: 17 SMASRDKKPAKPSSSRAGGIR---TLSDLNRRSGPXXXXXXXAPQEYYTGGEKSGMLVQDPSKGDPNDVDAIFNQAKELGAVEGPLEHLXXXXXXXXFTGTARLLSGETVPSA----------PQQPEPIVHNIVFWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNLIRRDVK 550 S S P + SSSR + TL DL + Q+++ GGEKSG+ VQ+P ++ P + FTG AR L GE PS PQ P + + FWA+GF+V+DG L R DDP+NA L SI++ P + A V V + + D K Sbjct: 60 SAKSSSSTPRESSSSRKQPPKKFATLGDLASGAADSSDDDDDENQDFFAGGEKSGLAVQNPDDLKKKIIEKARRTQLPASDDSEPRRNY--------FTGPARTLGGEDTPSRVIDTPSGPAQPQIPRRVRRTLHFWADGFSVDDGELYRSDDPQNAEILNSIRQGRAPLSIMNAQHGQDVDVEIKQHDEK 242
BLAST of FC878225 vs. ExPASy Swiss-Prot
Match: UBX1_YEAST (UBX domain-containing protein 1 OS=Saccharomyces cerevisiae GN=SHP1 PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.824e-12 Identity = 57/191 (29.84%), Postives = 83/191 (43.46%), Query Frame = 2 Query: 26 SRDKKPAKPSSSRAGG----IRTLSDLNRRSGPXXXXXXXAPQEYYTGGEKSGMLVQDPSKGDPNDV-DAIFNQAK---ELGAVEGPLEHLXXXXXXXXFTGTARLLSGETVPSAPQ-----------QPEPIVHNIVFWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNLIRR 541 S +P K SS G + SD+ R G P+ + GGE SG+ V DPS DPN + + +A+ ++GA G + FTG L G T+ +A + +PE + I FW GF V DGPL R DDP N+ +L + + P +L V VN+ ++ Sbjct: 106 STSPEPTKGSSRSGSGNNSRFMSFSDMVR--GQADDDDEDQPRNTFAGGETSGLEVTDPS--DPNSLLKDLLEKARRGGQMGAENGFRDDEDHEMGANRFTGRGFRL-GSTIDAADEVVEDNTSQSQRRPEKVTREITFWKEGFQVADGPLYRYDDPANSFYLSELNQGRAPLKLLDVQFGQEVEVNVYKK 291 The following BLAST results are available for this feature:
BLAST of FC878225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878225 ID=FC878225; Name=FC878225; organism=Citrus clementina; type=EST; length=881bpback to top |