FC878225

Overview
NameFC878225
Unique NameFC878225
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length881
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10503 contig Ccv1_Contig10503:1..881. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878225 vs. ExPASy Swiss-Prot
Match: UBAX1_ARATH (UBA and UBX domain-containing protein At4g15410 OS=Arabidopsis thaliana GN=At4g15410 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.632e-42
Identity = 96/185 (51.89%), Postives = 116/185 (62.70%), Query Frame = 2
Query:   23 ASRDKKPAKPSSSR-------AGGIRTLSDLNRRSGPXXXXXXXAPQEYYTGGEKSGMLVQDPSKGDPNDVDAIFNQAKELGAVEGPLEHLXXXXXXXXFTGTARLLSGETVPSAPQQ-----PEPIVHNIVFWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNLIRR 541
            A  +K+   PS  R       AG IRT +DLNR              EYYTGG+KSGM+VQDP K    DVD +F+QA++  AV+ P+E          FTG ARLLSGE V S+PQQ     P+ I+H I FW NGFTVNDGPLR   DPENA+F+ SI +SECP ELEPADK+  VHV+L+RR
Sbjct:  111 AGENKETENPSGIRSSRSRQHAGNIRTFADLNRSPADGEGSDSDEANEYYTGGQKSGMMVQDPKK--VKDVDELFDQARQ-SAVDRPVE--PSRSASTSFTGAARLLSGEAVSSSPQQQQQEQPQRIMHTITFWLNGFTVNDGPLRGFSDPENAAFMNSISRSECPSELEPADKKIPVHVDLVRR 290          

HSP 2 Score: 72.7886 bits (177), Expect = 2.928e-12
Identity = 38/64 (59.38%), Postives = 46/64 (71.88%), Query Frame = 1
Query:  691 EPEKHHVPFQGVGRTLGSS-STAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTR 879
            EP K   PFQGVGRTLG+S S ++S P   S P+N A + S GLVVD   P+TS+Q+RLADGTR
Sbjct:  296 EPPKPKNPFQGVGRTLGASGSGSSSAPQASSAPMNVAPAPSRGLVVDPAAPTTSIQLRLADGTR 359          
BLAST of FC878225 vs. ExPASy Swiss-Prot
Match: NSF1C_DICDI (NSFL1 cofactor p47 homolog OS=Dictyostelium discoideum GN=nsfl1c PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.701e-16
Identity = 56/167 (33.53%), Postives = 81/167 (48.50%), Query Frame = 2
Query:   50 PSSSRAGGIRTLSDLNRRS------GPXXXXXXXAPQEYYTGGEKSGMLVQDPSK-----GDPNDVDAIFNQAKELGAV---EGPLEHLXXXXXXXXFTGTARLLSGETVPSAPQQPEP----IVHNIVFWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELE 496
            P+  R GGIRTLSD N                    Q+Y+TGGEKSG++V+   K     G  + V+ +F+ AK  GAV   E  +E            G      G    S P++ +P    +   + FW  GFT++DGPLR+ D+PEN   L+ I++   P+EL+
Sbjct:   93 PAGGRVGGIRTLSDFNNDDHDDHDHSDGDDDEDDRSQQYFTGGEKSGLVVESAPKKGKNGGSGDIVNDVFDSAKRHGAVASNEKKVEKPDSFDSVGYQLGATD--QGNRNVSKPKEKDPNSQVVEVKVTFWNQGFTIDDGPLRKYDNPENKELLDDIQRGIVPRELQ 257          
BLAST of FC878225 vs. ExPASy Swiss-Prot
Match: UBX1_EMENI (UBX domain-containing protein 1 OS=Emericella nidulans GN=ubx1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.233e-15
Identity = 59/191 (30.89%), Postives = 81/191 (42.41%), Query Frame = 2
Query:   17 SMASRDKKPAKPSSSRAGGIR---TLSDLNRRSGPXXXXXXXAPQEYYTGGEKSGMLVQDPSKGDPNDVDAIFNQAKELGAVEGPLEHLXXXXXXXXFTGTARLLSGETVPSA----------PQQPEPIVHNIVFWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNLIRRDVK 550
            S  S    P + SSSR    +   TL DL   +           Q+++ GGEKSG+ VQ+P       ++              P  +         FTG AR L GE  PS           PQ P  +   + FWA+GF+V+DG L R DDP+NA  L SI++   P  +  A     V V + + D K
Sbjct:   60 SAKSSSSTPRESSSSRKQPPKKFATLGDLASGAADSSDDDDDENQDFFAGGEKSGLAVQNPDDLKKKIIEKARRTQLPASDDSEPRRNY--------FTGPARTLGGEDTPSRVIDTPSGPAQPQIPRRVRRTLHFWADGFSVDDGELYRSDDPQNAEILNSIRQGRAPLSIMNAQHGQDVDVEIKQHDEK 242          
BLAST of FC878225 vs. ExPASy Swiss-Prot
Match: UBX1_YEAST (UBX domain-containing protein 1 OS=Saccharomyces cerevisiae GN=SHP1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.824e-12
Identity = 57/191 (29.84%), Postives = 83/191 (43.46%), Query Frame = 2
Query:   26 SRDKKPAKPSSSRAGG----IRTLSDLNRRSGPXXXXXXXAPQEYYTGGEKSGMLVQDPSKGDPNDV-DAIFNQAK---ELGAVEGPLEHLXXXXXXXXFTGTARLLSGETVPSAPQ-----------QPEPIVHNIVFWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNLIRR 541
            S   +P K SS    G      + SD+ R  G         P+  + GGE SG+ V DPS  DPN +   +  +A+   ++GA  G  +          FTG    L G T+ +A +           +PE +   I FW  GF V DGPL R DDP N+ +L  + +   P +L        V VN+ ++
Sbjct:  106 STSPEPTKGSSRSGSGNNSRFMSFSDMVR--GQADDDDEDQPRNTFAGGETSGLEVTDPS--DPNSLLKDLLEKARRGGQMGAENGFRDDEDHEMGANRFTGRGFRL-GSTIDAADEVVEDNTSQSQRRPEKVTREITFWKEGFQVADGPLYRYDDPANSFYLSELNQGRAPLKLLDVQFGQEVEVNVYKK 291          
The following BLAST results are available for this feature:
BLAST of FC878225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
UBAX1_ARATH4.632e-4251.89UBA and UBX domain-containing protein At4g15410 OS... [more]
NSF1C_DICDI5.701e-1633.53NSFL1 cofactor p47 homolog OS=Dictyostelium discoi... [more]
UBX1_EMENI8.233e-1530.89UBX domain-containing protein 1 OS=Emericella nidu... [more]
UBX1_YEAST3.824e-1229.84UBX domain-containing protein 1 OS=Saccharomyces c... [more]
back to top
Properties
Property NameValue
Genbank descriptionIC0AAA33CF12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA33CF12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878225 ID=FC878225; Name=FC878225; organism=Citrus clementina; type=EST; length=881bp
CAGAAAAAACTTCCAATCCATGGCGTCACGTGACAAAAAACCAGCAAAAC
CATCAAGCAGTCGGGCCGGCGGTATACGCACGCTCTCCGATCTGAACCGG
CGGTCGGGACCCGACTCCGACTCAGACGATGATGCACCTCAAGAGTATTA
CACTGGTGGCGAGAAGAGTGGTATGCTTGTCCAAGATCCTTCCAAGGGCG
ATCCTAATGATGTGGATGCGATTTTCAATCAGGCTAAGGAACTGGGAGCT
GTAGAAGGGCCGCTTGAGCATCTCAGTCCATCTTCAAGCTCAAGAAGCTT
TACTGGAACTGCTAGATTACTCTCGGGGGAAACTGTACCGTCTGCACCTC
AGCAGCCTGAGCCCATTGTTCATAACATTGTTTTCTGGGCCAATGGTTTC
ACTGTTAATGATGGTCCCTTGAGGAGGTTGGATGATCCTGAAAATGCATC
TTTCTTAGAGAGCATCAAAAAGTCTGAGTGTCCAAAAGAGCTAGAGCCTG
CTGATAAAAGGTCCTCAGTTCATGTCAATCTGATAAGGAGGGATGTGAAA
TGCCCTGTAAGTCTAATTTTCTTTGTTTTGTACTAGCCTTATGTTTGCAG
TGGGCCGTGGCCCTGCAAATTGGTTTCAATGTAATATGGATCTTGTTGGA
AACTGGTAAACCATCATTCTTAATGTTTATATTTTTGCAGGAACCAGAGA
AGCACCATGTTCCATTTCAGGGTGTTGGAAGAACACTGGGTAGCAGCAGT
ACTGCAGCTTCTGAACCAACTGTTGATTCCACCCCGGTCAACACTGCTTC
CTCCTCTTCTGAGGGTCTGGTTGTTGATGAAAACCTTCCGTCGACATCAG
TTCAGATCAGGTTGGCGGACGGAACCCGCTT
back to top