FC878236

Overview
NameFC878236
Unique NameFC878236
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length899
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10840 contig Ccv1_Contig10840:54..952. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: CCR4C_ARATH (Carbon catabolite repressor protein 4 homolog 3 OS=Arabidopsis thaliana GN=CCR4-3 PE=2 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 5.270e-57
Identity = 106/170 (62.35%), Postives = 129/170 (75.88%), Query Frame = 1
Query:  229 YCRRWYNPLRRK--PFDEPSPDVLRHWIDADPNPISSQ-ERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDRYFDILNVMEKTGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGLRENVAQLSAFEADAQHKIKK 729
            Y RRW NPL R+  P   PS  + R WID+D  P+S   ERF+VVSYNILGD N+  HR+LY NV   Y+KW  RKRLIC+ELI LNPDII MQEVD+YFD+ ++MEK GYAG YKRRTGDNVDGCAMFWKAD+F +LE+ +IEF +FG+R+NVAQL+  E    +K +K
Sbjct:   68 YSRRWQNPLPRRQHPDQIPSSQIARDWIDSDTTPVSQALERFTVVSYNILGDGNSSYHRELYSNVSVPYLKWGYRKRLICEELIRLNPDIISMQEVDKYFDLFSMMEKAGYAGSYKRRTGDNVDGCAMFWKADRFGVLERENIEFSQFGMRDNVAQLAVLELRKSNKSRK 237          

HSP 2 Score: 89.7373 bits (221), Expect = 2.393e-17
Identity = 42/98 (42.86%), Postives = 63/98 (64.29%), Query Frame = 2
Query:  605 FGKLISFGY*SKQALNLKSLAFVKMWHNFPLLRQMRNTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITLQSAIY 898
            F K   FG   ++ +               +L   ++ KSR++L+GNIHVLYNPN+G+VKLGQ+  L S+A ++++KWG+IP+VL GDFN T +S +Y
Sbjct:  196 FWKADRFGVLERENIEFSQFGMRDNVAQLAVLELRKSNKSRKILLGNIHVLYNPNQGDVKLGQVRSLCSKAHLLSKKWGDIPIVLCGDFNSTPKSPLY 293          
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: CCR4E_ARATH (Carbon catabolite repressor protein 4 homolog 5 OS=Arabidopsis thaliana GN=CCR4-5 PE=2 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 2.253e-50
Identity = 67/157 (42.68%), Postives = 101/157 (64.33%), Query Frame = 1
Query:  256 RRKPFDEPSPDVLRHWIDADPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDRYFDILNVMEKTGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGLRENVAQLSAFEADAQHKIK 726
            RR+  ++ S  V R W+ +  N  +  ++  +VSYN+LG  NA  H DLY NV  ++++W+RRK LIC+E+   N  I+C+QEVDR+ D+  +++  G+ G +K RTG+  DGCA+FWK + F LL+   IEF +FG+R NVAQL   E + +   K
Sbjct:   71 RRRTKEKISSSVEREWVFSANNFENLADKLVLVSYNLLGVDNASNHMDLYYNVPRKHLEWSRRKHLICKEISRYNASILCLQEVDRFDDLDVLLKNRGFRGVHKSRTGEASDGCAIFWKENLFELLDHQHIEFDKFGMRNNVAQLCVLEMNCEEDPK 227          

HSP 2 Score: 80.8777 bits (198), Expect = 2.253e-50
Identity = 35/65 (53.85%), Postives = 51/65 (78.46%), Query Frame = 2
Query:  704 QMRNTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITLQSAIY 898
            ++R++  RR++VGNIHVL+NP RG++KLGQ+     +A  ++++WGNIPV +AGD N T QSAIY
Sbjct:  231 RVRSSDPRRLVVGNIHVLFNPKRGDIKLGQVRLFLEKAYKLSQEWGNIPVAIAGDLNSTPQSAIY 295          
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: CCR4F_ARATH (Carbon catabolite repressor protein 4 homolog 6 OS=Arabidopsis thaliana GN=CCR4-6 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 1.744e-40
Identity = 62/150 (41.33%), Postives = 93/150 (62.00%), Query Frame = 1
Query:  256 RRKPFDEPSPDVLRHWIDADPNPISSQERFSVVSYNILGDKNAFKH-RDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDRYFDILNVMEKTGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGLRENVAQLSAFE 702
            R++P  +PS    R W  A   P    E+F V+SYNIL D  A  H R LY ++    + W  RK  +  EL   + DI+C+QEVD++ D+   M+  GY+  +K RTG+ VDGCA+FW++++F+L+ + SI+F + GLR+NVAQ+   E
Sbjct:  156 RQRPRSKPSD--YREWEYAKTPPSPGSEKFVVLSYNILADYLANDHWRSLYFHIPRNMLSWGWRKSKLVFELSLWSADIMCLQEVDKFQDLEEEMKHRGYSAIWKMRTGNAVDGCAIFWRSNRFKLVHEESIQFNQLGLRDNVAQICVLE 303          

HSP 2 Score: 67.3958 bits (163), Expect = 1.744e-40
Identity = 30/59 (50.85%), Postives = 42/59 (71.19%), Query Frame = 2
Query:  722 SRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITLQSAIY 898
            S RV++ NIHVL+NP RG+ KLGQ+  L  +A  V++ W + P+VL GDFN T +S +Y
Sbjct:  324 SHRVVICNIHVLFNPKRGDFKLGQVRTLLDKAHAVSKLWDDAPIVLCGDFNCTPKSPLY 382          
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: ANGE1_RAT (Protein angel homolog 1 OS=Rattus norvegicus GN=Angel1 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.747e-22
Identity = 54/159 (33.96%), Postives = 83/159 (52.20%), Query Frame = 1
Query:  253 LRRKPFDEPSPDVL-RHWIDADPNPISS--------QERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEV--DRYFDILN-VMEKTGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGL----RENV 681
            L+  P + P  ++L R W D    P +         Q +F+++SYNIL      +  +LY +   + + WN R   + QE    +PDI+C+QEV  D Y++ L   +   G+   YKRRTG   DGCA+ +K  +FRLL  + +E+   GL    R+NV
Sbjct:  203 LQPPPMEIPYHEILWREWEDFSTQPDAQGLEAGDGPQFQFTLMSYNILAQDLMQQSSELYLHCHPDILNWNYRFANLMQEFQHWDPDILCLQEVQEDHYWEQLEPSLRMMGFTCFYKRRTGCKTDGCAVCYKPTRFRLLCASPVEYFRPGLELLNRDNV 361          

HSP 2 Score: 47.3654 bits (111), Expect = 1.747e-22
Identity = 24/56 (42.86%), Postives = 31/56 (55.36%), Query Frame = 2
Query:  737 VGNIHVLYNPNRGEVKLGQICFLSSRAQIVA--EKWGNIPVVLAGDFNITLQSAIY 898
            V N HVLYNP RG+VKL Q+  L +    VA      + P++L GD N    S +Y
Sbjct:  385 VANTHVLYNPRRGDVKLAQMAILLAEVDKVARLSDGSHCPIILCGDLNSVPDSPLY 440          
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: ANGE1_MOUSE (Protein angel homolog 1 OS=Mus musculus GN=Angel1 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.747e-22
Identity = 54/159 (33.96%), Postives = 83/159 (52.20%), Query Frame = 1
Query:  253 LRRKPFDEPSPDVL-RHWIDADPNPISS--------QERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEV--DRYFDILN-VMEKTGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGL----RENV 681
            L+  P + P  ++L R W D    P +         Q +F+++SYNIL      +  +LY +   + + WN R   + QE    +PDI+C+QEV  D Y++ L   +   G+   YKRRTG   DGCA+ +K  +FRLL  + +E+   GL    R+NV
Sbjct:  203 LQPPPMEIPYHEILWREWEDFSTQPDAQGLEAGDGPQFQFTLMSYNILAQDLMQQSSELYLHCHPDILNWNYRFANLMQEFQHWDPDILCLQEVQEDHYWEQLEPSLRMMGFTCFYKRRTGCKTDGCAVCYKPTRFRLLCASPVEYFRPGLELLNRDNV 361          

HSP 2 Score: 47.3654 bits (111), Expect = 1.747e-22
Identity = 24/56 (42.86%), Postives = 31/56 (55.36%), Query Frame = 2
Query:  737 VGNIHVLYNPNRGEVKLGQICFLSSRAQIVA--EKWGNIPVVLAGDFNITLQSAIY 898
            V N HVLYNP RG+VKL Q+  L +    VA      + P++L GD N    S +Y
Sbjct:  385 VANTHVLYNPRRGDVKLAQMAILLAEVDKVARLSDGSHCPIILCGDLNSVPDSPLY 440          
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: ANGE1_HUMAN (Protein angel homolog 1 OS=Homo sapiens GN=ANGEL1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.155e-21
Identity = 50/144 (34.72%), Postives = 75/144 (52.08%), Query Frame = 1
Query:  295 RHWIDADPNPISS--------QERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEV--DRYFDILN-VMEKTGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGL----RENV 681
            R W D    P +         Q +F+++SYNIL      +  +LY +   + + WN R   + QE    +PDI+C+QEV  D Y++ L   +   G+   YKRRTG   DGCA+ +K  +FRLL  + +E+   GL    R+NV
Sbjct:  221 REWEDFSTQPDAQGLKAGDGPQFQFTLMSYNILAQDLMQQSSELYLHCHPDILNWNYRFVNLMQEFQHWDPDILCLQEVQEDHYWEQLEPSLRMMGFTCFYKRRTGCKTDGCAVCYKPTRFRLLCASPVEYFRPGLELLNRDNV 364          

HSP 2 Score: 46.9802 bits (110), Expect = 3.155e-21
Identity = 23/56 (41.07%), Postives = 31/56 (55.36%), Query Frame = 2
Query:  737 VGNIHVLYNPNRGEVKLGQICFLSSRAQIVA--EKWGNIPVVLAGDFNITLQSAIY 898
            V N H+LYNP RG+VKL Q+  L +    VA      + P++L GD N    S +Y
Sbjct:  388 VANTHILYNPRRGDVKLAQMAILLAEVDKVARLSDGSHCPIILCGDLNSVPDSPLY 443          
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: ANGE2_HUMAN (Protein angel homolog 2 OS=Homo sapiens GN=ANGEL2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.426e-20
Identity = 45/121 (37.19%), Postives = 65/121 (53.72%), Query Frame = 1
Query:  307 DADPNPISSQERF--SVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEV--DRY-FDILNVMEKTGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEF 654
            + DP    S+ +F  SV+SYNIL       +  LY++ R   + W+ R   I +E+   + D++C+QEV  D Y  +I   +E  GY   YK RTG   DGCA+ +K  KF LL    +EF
Sbjct:  153 NVDPKCEDSENKFDFSVMSYNILSQDLLEDNSHLYRHCRRPVLHWSFRFPNILKEIKHFDADVLCLQEVQEDHYGAEIRPSLESLGYHCEYKMRTGRKPDGCAICFKHSKFSLLSVNPVEF 273          

HSP 2 Score: 48.1358 bits (113), Expect = 7.426e-20
Identity = 25/58 (43.10%), Postives = 36/58 (62.07%), Query Frame = 2
Query:  731 VLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVA-EKWGNI-PVVLAGDFNITLQSAIY 898
            + V N H+LYNP RG++KL Q+  L +    VA +K G+  P+V+ GDFN    S +Y
Sbjct:  304 ICVANTHLLYNPRRGDIKLTQLAMLLAEISSVAHQKDGSFCPIVMCGDFNSVPGSPLY 361          
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: ANGE2_BOVIN (Protein angel homolog 2 OS=Bos taurus GN=ANGEL2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.634e-19
Identity = 42/107 (39.25%), Postives = 59/107 (55.14%), Query Frame = 1
Query:  343 FSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEV--DRY-FDILNVMEKTGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEF 654
            FSV+SYNIL       +  LY++ R   + W+ R   I +E+   + D++C+QEV  D Y  +I   +E  GY   YK RTG   DGCA+ +K  KF LL    +EF
Sbjct:  167 FSVMSYNILSQDLLEDNSHLYKHCRRPVLHWSFRFPNILKEIKHFDADVLCLQEVQEDHYGTEIRPSLESLGYHCEYKMRTGRKPDGCAICFKHSKFSLLSVNPVEF 273          

HSP 2 Score: 48.1358 bits (113), Expect = 1.634e-19
Identity = 26/61 (42.62%), Postives = 36/61 (59.02%), Query Frame = 2
Query:  722 SRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVA-EKWGNI-PVVLAGDFNITLQSAIY 898
            S  + V N H+LYNP RG++KL Q+  L +    VA +K G   P+V+ GDFN    S +Y
Sbjct:  301 SPAICVANTHLLYNPRRGDIKLTQLAMLLAEISSVAHQKDGRFCPIVMCGDFNSVPGSPLY 361          
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: CCR4_CRYNE (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Cryptococcus neoformans GN=CCR4 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.037e-19
Identity = 55/149 (36.91%), Postives = 80/149 (53.69%), Query Frame = 1
Query:  277 PSPDVLRHWIDADPN---PISS-QERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVD--RYFDILNVM-EKTGYAGCYKRRTGDN---------VDGCAMFWKADKFRLLEQTSIEFKEFGLRE 675
            P P   R WID + +   P S  QE FSV++YNIL    +F     Y       + W+ RKRL+ +E++  + D++C+QE+D  +Y D    M +K GY G +  R+            VDGCA FWK +KFRL+E   IEF +  L++
Sbjct:  363 PPPPPERQWIDLETDVDTPTSGKQESFSVLTYNILCA--SFAPATTYSYTPSWALDWDYRKRLLLEEIVTASADVVCLQEIDCKQYADYFYPMLKKEGYEGQHYPRSRAKTMSVDEQKLVDGCATFWKEEKFRLVETQVIEFNQLALQK 509          

HSP 2 Score: 30.8018 bits (68), Expect = 6.037e-19
Identity = 16/47 (34.04%), Postives = 25/47 (53.19%), Query Frame = 2
Query:  728 RVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGD 868
            R+LV N H+ ++    +VKL QI  L    + + E++   PV L  D
Sbjct:  541 RLLVANSHIYWDHRYRDVKLVQIGMLMEELEKIVEQFSRYPVKLDTD 587          
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: ANGE2_DANRE (Protein angel homolog 2 OS=Danio rerio GN=angel2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.069e-19
Identity = 51/150 (34.00%), Postives = 77/150 (51.33%), Query Frame = 1
Query:  283 PDVLRHWID------ADPNPISSQER----FSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEV--DRY-FDILNVMEKTGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGL----RENV 681
            P++ RHW D      A P+    +++    FSV+SYNIL       +  LY++     + W  R   I +EL   + DI+C+QEV  D Y   I   +E  GY   +KRRTG   DGCA+ +K ++F L+    +E+   G+    R+NV
Sbjct:  169 PELKRHWEDLSHLCKAAPSVNRGKQKWPFDFSVMSYNILSQDLLCDNTYLYRHCNPPVLDWRNRFPNIIKELEQYSADIMCLQEVQEDHYKQQIKPSLESLGYHCEFKRRTGLKPDGCAVIFKRERFSLVSCHPVEYFRRGVPLMDRDNV 318          

HSP 2 Score: 45.8246 bits (107), Expect = 6.069e-19
Identity = 23/58 (39.66%), Postives = 34/58 (58.62%), Query Frame = 2
Query:  731 VLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGN--IPVVLAGDFNITLQSAIY 898
            + V N H+LYNP RG++KL Q+  L +    V++   +   PV+L GDFN    S +Y
Sbjct:  336 ICVANTHLLYNPRRGDIKLAQLAMLLAEISRVSQLPDSSVCPVLLCGDFNSVPWSPLY 393          
The following BLAST results are available for this feature:
BLAST of FC878236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CCR4C_ARATH5.270e-5762.35Carbon catabolite repressor protein 4 homolog 3 OS... [more]
CCR4E_ARATH2.253e-5042.68Carbon catabolite repressor protein 4 homolog 5 OS... [more]
CCR4F_ARATH1.744e-4041.33Carbon catabolite repressor protein 4 homolog 6 OS... [more]
ANGE1_RAT1.747e-2233.96Protein angel homolog 1 OS=Rattus norvegicus GN=An... [more]
ANGE1_MOUSE1.747e-2233.96Protein angel homolog 1 OS=Mus musculus GN=Angel1 ... [more]
ANGE1_HUMAN3.155e-2134.72Protein angel homolog 1 OS=Homo sapiens GN=ANGEL1 ... [more]
ANGE2_HUMAN7.426e-2037.19Protein angel homolog 2 OS=Homo sapiens GN=ANGEL2 ... [more]
ANGE2_BOVIN1.634e-1939.25Protein angel homolog 2 OS=Bos taurus GN=ANGEL2 PE... [more]
CCR4_CRYNE6.037e-1936.91Glucose-repressible alcohol dehydrogenase transcri... [more]
ANGE2_DANRE6.069e-1934.00Protein angel homolog 2 OS=Danio rerio GN=angel2 P... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA55AC11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA55AC11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878236 ID=FC878236; Name=FC878236; organism=Citrus clementina; type=EST; length=899bp
AGAGAGTGGTTACTTGTGGATCAATCAATGAGGTCCGAAGCCACTTCCTC
CTCTTCTTGGCTCGGCCGGATCCCACCAACGGCCACCTCCGCGCCGAGCG
GCGGCTCCGGCAAGTGCCGGCACTTCATCTTCTTCTCCTCCTCCTGCTGC
AAGACTACAAACACCATTTCCTGTGGCTTCAATGGTCCCACCACACATTC
CTCATCATCATCGCCGTCAACTCGTTCGTACTGCCGTCGATGGTACAACC
CTCTCCGACGTAAGCCGTTCGATGAGCCTTCTCCTGACGTCCTCCGCCAC
TGGATCGACGCTGATCCTAATCCAATTTCATCTCAAGAGAGATTCTCGGT
CGTGTCATATAACATATTGGGAGATAAAAATGCTTTCAAACATAGAGATT
TATATCAAAATGTTCGGTATGAATACATGAAATGGAACCGTCGCAAAAGG
TTAATATGCCAAGAGTTGATTGGATTGAACCCGGATATTATCTGTATGCA
AGAGGTGGACAGGTATTTTGATATTCTGAATGTTATGGAGAAAACGGGAT
ATGCTGGTTGTTACAAGCGGCGCACTGGGGATAACGTTGATGGTTGTGCG
ATGTTTTGGAAAGCTGATAAGTTTCGGTTATTAGAGCAAACAAGCATTGA
ATTTAAAGAGTTTGGCCTTCGTGAAAATGTGGCACAACTTTCCGCTTTTG
AGGCAGATGCGCAACACAAAATCAAGAAGAGTACTGGTTGGTAACATACA
CGTTCTTTATAATCCAAACCGAGGGGAAGTGAAATTAGGTCAAATTTGTT
TTCTTTCCTCAAGGGCACAAATTGTTGCAGAGAAATGGGGTAATATCCCT
GTTGTGCTTGCTGGTGACTTCAATATCACTCTTCAAAGTGCAATTTACA
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