FC878240

Overview
NameFC878240
Unique NameFC878240
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length838
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12933 contig Ccv1_Contig12933:4..841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC878240 vs. ExPASy Swiss-Prot
Match: HS23M_ARATH (23.6 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.6 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.490e-13
Identity = 37/52 (71.15%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:  692 DVFDPFSPTRSLSQVLNFMDQMTESPFFSGTRG----GLRRGWDAKETDDAL 835
            DVFDPFSPTRS+SQVLN MDQ  E+P  S TRG    G RRGWD KE DDAL
Sbjct:   67 DVFDPFSPTRSVSQVLNLMDQFMENPLLSATRGMGASGARRGWDIKEKDDAL 118
[Close]
BLAST of FC878240 vs. ExPASy Swiss-Prot
Match: HS235_ARATH (23.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.5 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.352e-11
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 2 
Query:  695 VFDPFSPTRSLSQVLNFMDQMTESPFFSGTRG----GLRRGWDAKETDDALN 838
            + DPF+PTRSLSQ+LNFMDQ++E P  S TRG    G+RRGW+ KE DDAL+
Sbjct:   70 ILDPFTPTRSLSQMLNFMDQVSEIPLVSATRGMGASGVRRGWNVKEKDDALH 121
The following BLAST results are available for this feature:
BLAST of FC878240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
HS23M_ARATH5.490e-1371.1523.6 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS235_ARATH1.352e-1163.4623.5 kDa heat shock protein, mitochondrial OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA29CE04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA29CE04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878240 ID=FC878240; Name=FC878240; organism=Citrus clementina; type=EST; length=838bp
CCGCATTCACAAAAAGTATTTTGAAATCTCTGCATTGTTTTGTGCTTTCT
TTAAGAATTCGGCTCAATGGCGTCCTCTCTTGCTCTCAAGAGGCTTGTTT
CTTTTAATCTCATCCCCAGGGCTTTACGCTGCACCGTCGCTCCTTCTGCT
ACTTCGGCATCTCGGTTCTTCAACACAAACGCTGTTCGTCAATACGATGA
CGGCGGAGACGACCGTGATCTCGACATTGATCGCCGTTCCGCTCGCTCTT
TCCCTCGCCGTCGTGACGACTTCTTCTCAGGTAGTCGTCTTCTATTTCCC
GTCCCCAGCCCTGTTTCTTTTAAAACGCTAATCTTATTTTGCTGTTGAAC
TAAAAATGCTTGGCGGCGTTTTAGTGTGACAGAGAGAAGAAATAAACTAA
AAACAGCTATTTTTACTCGCTATCAGAAACCGATAATTCCTTTTAAACGC
TAATCTTATTTTTCTGCTGAGCGGCTGTTTGGTGTGACAGAGGAAGAATA
AACTCAAAAGAGCTATTTTACTTGTTATTGGAAGCAGATAGTTCATTTTT
TCTAAAATGAATTTTGAAAAATATAATTCTAAGAAATAATCGTTCGTTAA
TACCATTTGTTGGAAACAGGCCGATGAGTTTGATTAGATTCTTTCTCTTG
GTCTCTGTGATAGTAATTGACATTTATTTTGTGGTGCAATAGATGTGTTT
GATCCATTTTCACCAACAAGGAGCCTGAGCCAGGTCCTGAACTTCATGGA
TCAGATGACGGAGAGCCCTTTCTTCAGTGGCACGCGTGGTGGACTGCGCC
GAGGCTGGGATGCAAAAGAAACCGATGACGCATTGAAC
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