FC878242

Overview
NameFC878242
Unique NameFC878242
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878242_ssr514 microsatellite FC878242_ssr514:514..523. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5702 contig Ccv1_Contig5702:1..687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALM_LOCMI (Calmodulin OS=Locusta migratoria PE=1 SV=2)

HSP 1 Score: 296.59 bits (758), Expect = 8.203e-80
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 2 
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 149
[Close]
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALM_DROME (Calmodulin OS=Drosophila melanogaster GN=Cam PE=1 SV=2)

HSP 1 Score: 296.59 bits (758), Expect = 8.203e-80
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 2 
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 149
[Close]
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALM_APLCA (Calmodulin OS=Aplysia californica GN=CAM PE=2 SV=2)

HSP 1 Score: 296.59 bits (758), Expect = 8.203e-80
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 2 
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 149
[Close]
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALMA_HALRO (Calmodulin-A OS=Halocynthia roretzi PE=1 SV=2)

HSP 1 Score: 296.59 bits (758), Expect = 8.203e-80
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 2 
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 149
[Close]
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALM1_BRALA (Calmodulin-1 OS=Branchiostoma lanceolatum PE=2 SV=2)

HSP 1 Score: 296.59 bits (758), Expect = 8.203e-80
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 2 
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 149
[Close]
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALM1_BRAFL (Calmodulin-1 OS=Branchiostoma floridae PE=2 SV=2)

HSP 1 Score: 296.59 bits (758), Expect = 8.203e-80
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 2 
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 149
[Close]
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALM_STIJA (Calmodulin OS=Stichopus japonicus PE=1 SV=2)

HSP 1 Score: 295.434 bits (755), Expect = 1.828e-79
Identity = 148/149 (99.33%), Postives = 149/149 (100.00%), Query Frame = 2 
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNG+ISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 149
[Close]
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALM_CAEEL (Calmodulin OS=Caenorhabditis elegans GN=cmd-1 PE=1 SV=3)

HSP 1 Score: 295.434 bits (755), Expect = 1.828e-79
Identity = 148/149 (99.33%), Postives = 149/149 (100.00%), Query Frame = 2 
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMT+K
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTTK 149
[Close]
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALM_STRIE (Calmodulin OS=Strongylocentrotus intermedius PE=2 SV=3)

HSP 1 Score: 294.664 bits (753), Expect = 3.117e-79
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 2 
Query:   56 ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK
Sbjct:    9 ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 156
[Close]
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALM_PYUSP (Calmodulin OS=Pyuridae sp. PE=1 SV=2)

HSP 1 Score: 294.664 bits (753), Expect = 3.117e-79
Identity = 148/149 (99.33%), Postives = 149/149 (100.00%), Query Frame = 2 
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG+GTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 149
The following BLAST results are available for this feature:
BLAST of FC878242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 481
Match NameE-valueIdentityDescription
CALM_LOCMI8.203e-80100.00Calmodulin OS=Locusta migratoria PE=1 SV=2[more]
CALM_DROME8.203e-80100.00Calmodulin OS=Drosophila melanogaster GN=Cam PE=1 ... [more]
CALM_APLCA8.203e-80100.00Calmodulin OS=Aplysia californica GN=CAM PE=2 SV=2[more]
CALMA_HALRO8.203e-80100.00Calmodulin-A OS=Halocynthia roretzi PE=1 SV=2[more]
CALM1_BRALA8.203e-80100.00Calmodulin-1 OS=Branchiostoma lanceolatum PE=2 SV=... [more]
CALM1_BRAFL8.203e-80100.00Calmodulin-1 OS=Branchiostoma floridae PE=2 SV=2[more]
CALM_STIJA1.828e-7999.33Calmodulin OS=Stichopus japonicus PE=1 SV=2[more]
CALM_CAEEL1.828e-7999.33Calmodulin OS=Caenorhabditis elegans GN=cmd-1 PE=1... [more]
CALM_STRIE3.117e-79100.00Calmodulin OS=Strongylocentrotus intermedius PE=2 ... [more]
CALM_PYUSP3.117e-7999.33Calmodulin OS=Pyuridae sp. PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionIC0AAA55AC12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA55AC12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878242 ID=FC878242; Name=FC878242; organism=Citrus clementina; type=EST; length=687bp
CGCTTACTGTGATTTTTTTAGTGTAGCTCCAGTTAATCCAAGTTAATCTA
CGATGGCGGATCAACTAACAGAAGAACAAATCGCCGAATTCAAAGAGGCG
TTTTCACTGTTCGACAAAGACGGCGATGGCACCATCACGACTAAAGAATT
GGGCACCGTTATGCGATCACTAGGACAGAACCCCACAGAAGCTGAGCTTC
AAGACATGATCAACGAAGTCGATGCGGACGGCAACGGCACGATAGACTTC
CCAGAGTTCCTCACAATGATGGCGCGCAAGATGAAGGACACCGACAGCGA
AGAGGAGATCCGCGAGGCGTTCCGCGTCTTCGACAAGGACGGCAACGGTT
TCATCTCGGCCGCCGAGCTGCGCCACGTCATGACCAACCTCGGCGAGAAG
CTCACGGACGAGGAGGTCGACGAGATGATCCGCGAGGCCGACATCGACGG
CGACGGACAGGTCAATTACGAGGAATTCGTCACCATGATGACGTCGAAGT
GAGCCGCCGGCTAGTGTGTGTGTAAAAAGCAGAGTATTTAAATATACATT
TTGTTTCATGACACACAATATTACCATCGTATTGGACCTGCATTTCTCTA
GTGTTTGCGATAAATTAAATATTGTCATCGTTTCAGTTAATTAATTATGA
TGTAACGTAATGCACGCGGGGCGCCAGCGGGGGGGGC
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