FC878244

Overview
NameFC878244
Unique NameFC878244
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length881
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10507 contig Ccv1_Contig10507:1..881. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878244 vs. ExPASy Swiss-Prot
Match: CFA_ECOLI (Cyclopropane-fatty-acyl-phospholipid synthase OS=Escherichia coli (strain K12) GN=cfa PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 3.806e-28
Identity = 68/206 (33.01%), Postives = 111/206 (53.88%), Query Frame = 1
Query:  262 EQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQTYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHW 873
            ++HY+L    F  +L  + +YSC Y+ DA   LE A++A L++ CE+ +L+ G  VLD+GCGWG L+ Y+A  Y +  + G+  S  Q++  +E+C  L+   V I++ D    ++   +DRI S+ MFEH+  KNY      + + +K + +  +H     T      D N D WI KY F  G +PS   +    +   V++ W
Sbjct:  117 KEHYDLGNDLFSRMLDPFMQYSCAYWKDADN-LESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNY-DVSVVGVTISAEQQKMAQERCEGLD---VTILLQDYR--DLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLH-----TIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDW 310          
BLAST of FC878244 vs. ExPASy Swiss-Prot
Match: CFA_ECOL6 (Cyclopropane-fatty-acyl-phospholipid synthase OS=Escherichia coli O6 GN=cfa PE=3 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 3.806e-28
Identity = 68/206 (33.01%), Postives = 111/206 (53.88%), Query Frame = 1
Query:  262 EQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQTYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHW 873
            ++HY+L    F  +L  + +YSC Y+ DA   LE A++A L++ CE+ +L+ G  VLD+GCGWG L+ Y+A  Y +  + G+  S  Q++  +E+C  L+   V I++ D    ++   +DRI S+ MFEH+  KNY      + + +K + +  +H     T      D N D WI KY F  G +PS   +    +   V++ W
Sbjct:  117 KEHYDLGNDLFSRMLDPFMQYSCAYWKDADN-LESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNY-DVSVVGVTISAEQQKMAQERCEGLD---VTILLQDYR--DLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLH-----TIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDW 310          
BLAST of FC878244 vs. ExPASy Swiss-Prot
Match: YLP3_PSEPU (Uncharacterized methyltransferase in lpd-3 5'region OS=Pseudomonas putida PE=4 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.397e-19
Identity = 55/197 (27.92%), Postives = 99/197 (50.25%), Query Frame = 1
Query:  253 KAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQTYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLL 834
            +A   HY++  +F++L L +   YSC YF +   TL+ A++   +  C + RL  G  +LDVGCGWG L+ + A+ Y + K+ GI  SK Q +   ++ +   L   V++ + D      +  +D++ S+ MFEH+   N     +K+   ++E  L+  H    K            ++I +Y F  G +P  +++
Sbjct:  105 EAISYHYDVSNAFYQLWLDQDMAYSCAYFREPDNTLDQAQQDKFDHLCRKLRLNAGDYLLDVGCGWGGLARFAAREY-DAKVFGITLSKEQLKLGRQRVKAEGLTDKVDLQILDYRDLPQDGRFDKVVSVGMFEHVGHANLALYCQKLFGAVREGGLVMNHGITAKHVDGRPVGRGAGEFIDRYVFPHGELPHLSMI 300          
BLAST of FC878244 vs. ExPASy Swiss-Prot
Match: CFA1_MYCTU (Cyclopropane-fatty-acyl-phospholipid synthase 1 OS=Mycobacterium tuberculosis GN=cmaA1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.834e-14
Identity = 48/158 (30.38%), Postives = 80/158 (50.63%), Query Frame = 1
Query:  262 EQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQTYSNCKITGICNSKTQKEFIEEQCRVLE-LQNVEIIVADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVH 726
            + HY+L   FF+L L     YSC YF     TL++A+ A ++L   +  L+ G T+LDVGCGWG+  +   + Y +  + G+  SK Q   +++     E L++  +++A    F  +   DRI SI  FEH   + Y        + +  D ++ +H
Sbjct:   13 QAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF--DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLH 167          
BLAST of FC878244 vs. ExPASy Swiss-Prot
Match: CFA1_MYCTA (Cyclopropane-fatty-acyl-phospholipid synthase 1 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=cmaA1 PE=4 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.834e-14
Identity = 48/158 (30.38%), Postives = 80/158 (50.63%), Query Frame = 1
Query:  262 EQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQTYSNCKITGICNSKTQKEFIEEQCRVLE-LQNVEIIVADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVH 726
            + HY+L   FF+L L     YSC YF     TL++A+ A ++L   +  L+ G T+LDVGCGWG+  +   + Y +  + G+  SK Q   +++     E L++  +++A    F  +   DRI SI  FEH   + Y        + +  D ++ +H
Sbjct:   13 QAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF--DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLH 167          
BLAST of FC878244 vs. ExPASy Swiss-Prot
Match: CFA2_MYCTU (Cyclopropane-fatty-acyl-phospholipid synthase 2 OS=Mycobacterium tuberculosis GN=cmaA2 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.648e-13
Identity = 50/168 (29.76%), Postives = 76/168 (45.24%), Query Frame = 1
Query:  253 KAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQTYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-EMEASYDRIYSIEMFEH---------MKNYQNLLKKISKWMKEDTLLFVH 726
            +A   HY+    FFKL L     YSC YF     TLE+A+ A  +L  ++  LE G T+LD+GCGWGS   +    Y +  + G+  S+ Q  +  ++    E+ +       I  + E +   DRI S+  FEH          + Y    KK      +D  + +H
Sbjct:   18 EAVRSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEY-DVNVIGLTLSENQ--YAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLH 182          
BLAST of FC878244 vs. ExPASy Swiss-Prot
Match: CFA2_MYCBO (Cyclopropane-fatty-acyl-phospholipid synthase 2 OS=Mycobacterium bovis GN=cmaA2 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.648e-13
Identity = 50/168 (29.76%), Postives = 76/168 (45.24%), Query Frame = 1
Query:  253 KAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQTYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-EMEASYDRIYSIEMFEH---------MKNYQNLLKKISKWMKEDTLLFVH 726
            +A   HY+    FFKL L     YSC YF     TLE+A+ A  +L  ++  LE G T+LD+GCGWGS   +    Y +  + G+  S+ Q  +  ++    E+ +       I  + E +   DRI S+  FEH          + Y    KK      +D  + +H
Sbjct:   18 EAVRSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEY-DVNVIGLTLSENQ--YAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLH 182          
BLAST of FC878244 vs. ExPASy Swiss-Prot
Match: CFA2_MYCLE (Cyclopropane-fatty-acyl-phospholipid synthase OS=Mycobacterium leprae GN=cmaA2 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.900e-13
Identity = 52/178 (29.21%), Postives = 81/178 (45.51%), Query Frame = 1
Query:  253 KAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQTYSNCKITGICNSKTQ-----KEFIE------EQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEH---------MKNYQNLLKKISKWMKEDTLLFVH 726
            +A + HY+    FFKL L     YSC YF     TLE+A++A  +L   +  LE G T+LD+GCGWGS  L+  + Y +  + G+  S  Q      +F E      ++ + + LQ  E         + +   DRI S+  FEH          + Y +  K     + +D  + +H
Sbjct:   21 EAVQSHYDRSNEFFKLWLDPSMTYSCAYFERPDLTLEEAQRAKRDLALSKLGLEPGMTLLDIGCGWGSTMLHAIEKY-DVNVIGLTLSANQLAHNKLKFAEIDHTRTDRTKDVRLQGWE---------QFDEPVDRIISLGAFEHFADGAGDAGFERYDSFFKMCYDVLPDDGRMLLH 188          
BLAST of FC878244 vs. ExPASy Swiss-Prot
Match: MMA1_MYCTU (Methoxy mycolic acid synthase 1 OS=Mycobacterium tuberculosis GN=mma1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.824e-12
Identity = 53/195 (27.18%), Postives = 89/195 (45.64%), Query Frame = 1
Query:  271 YELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQTYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVH-------HFCHKT-FAYHFEDTNDDDWITKYFFTGGTMPS 822
            Y++   FF L L   + Y+C YF     TLE+A+ A ++L  ++  LE G T+LDVGCGWG   +   + Y +  + G+  S+   E  +++   +  Q   E  +      E E + DRI S E F+  K   Y    ++    + +D  + +H        + H+   A    D     ++ +  F GG +PS
Sbjct:   15 YDISDDFFALFLDPTWVYTCAYFERDDMTLEEAQLAKVDLALDKLNLEPGMTLLDVGCGWGGALVRAVEKY-DVNVIGLTLSRNHYERSKDRLAAIGTQRRAEARLQGWE--EFEENVDRIVSFEAFDAFKKERYLTFFERSYDILPDDGRMLLHSLFTYDRRWLHEQGIALTMSDLRFLKFLRESIFPGGELPS 206          
BLAST of FC878244 vs. ExPASy Swiss-Prot
Match: MMA1_MYCTA (Methoxy mycolic acid synthase 1 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=mma1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.824e-12
Identity = 53/195 (27.18%), Postives = 89/195 (45.64%), Query Frame = 1
Query:  271 YELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQTYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVH-------HFCHKT-FAYHFEDTNDDDWITKYFFTGGTMPS 822
            Y++   FF L L   + Y+C YF     TLE+A+ A ++L  ++  LE G T+LDVGCGWG   +   + Y +  + G+  S+   E  +++   +  Q   E  +      E E + DRI S E F+  K   Y    ++    + +D  + +H        + H+   A    D     ++ +  F GG +PS
Sbjct:   15 YDISDDFFALFLDPTWVYTCAYFERDDMTLEEAQLAKVDLALDKLNLEPGMTLLDVGCGWGGALVRAVEKY-DVNVIGLTLSRNHYERSKDRLAAIGTQRRAEARLQGWE--EFEENVDRIVSFEAFDAFKKERYLTFFERSYDILPDDGRMLLHSLFTYDRRWLHEQGIALTMSDLRFLKFLRESIFPGGELPS 206          
The following BLAST results are available for this feature:
BLAST of FC878244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
CFA_ECOLI3.806e-2833.01Cyclopropane-fatty-acyl-phospholipid synthase OS=E... [more]
CFA_ECOL63.806e-2833.01Cyclopropane-fatty-acyl-phospholipid synthase OS=E... [more]
YLP3_PSEPU9.397e-1927.92Uncharacterized methyltransferase in lpd-3 5'regio... [more]
CFA1_MYCTU1.834e-1430.38Cyclopropane-fatty-acyl-phospholipid synthase 1 OS... [more]
CFA1_MYCTA1.834e-1430.38Cyclopropane-fatty-acyl-phospholipid synthase 1 OS... [more]
CFA2_MYCTU2.648e-1329.76Cyclopropane-fatty-acyl-phospholipid synthase 2 OS... [more]
CFA2_MYCBO2.648e-1329.76Cyclopropane-fatty-acyl-phospholipid synthase 2 OS... [more]
CFA2_MYCLE5.900e-1329.21Cyclopropane-fatty-acyl-phospholipid synthase OS=M... [more]
MMA1_MYCTU3.824e-1227.18Methoxy mycolic acid synthase 1 OS=Mycobacterium t... [more]
MMA1_MYCTA3.824e-1227.18Methoxy mycolic acid synthase 1 OS=Mycobacterium t... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA74DE04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA74DE04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878244 ID=FC878244; Name=FC878244; organism=Citrus clementina; type=EST; length=881bp
CTGCGGCACAGAAATAAGAGAGAACTGCAAATGGAGGGGATAATGCACGC
AGCTTACGATGCAACGGTGCGGCTGATGCTGTCATCACTTGAACGGAACT
TGCTACCGGACGCCGTCATCAGGAGGCTCAGCCGTTTGCTCTTGGGAGGC
CGACTTCGCTCCGGCTACAAACCTTCAGCTGAGCTCCAACTCAGTGACCT
CCTCCAGTTCGCACATTCACTGAGAGAGATGCCTATAGCCATCCAGACGG
ACAAGGCGAAAGAGCAGCATTATGAACTGCCAACCTCTTTCTTCAAGTTG
GTTCTTGGTAAATATTTCAAATACAGCTGCTGTTACTTCTCTGATGCATC
AAAAACCTTAGAGGATGCTGAGAAAGCAATGTTGGAGCTGTACTGTGAGA
GGTCAAGGTTGGAAGACGGTCACACTGTTCTTGATGTTGGATGTGGCTGG
GGGTCACTGTCCCTGTACATTGCTCAAACGTATAGTAACTGCAAGATTAC
TGGGATATGCAATTCAAAAACTCAGAAAGAATTTATTGAGGAGCAGTGTC
GGGTTCTTGAGCTTCAAAACGTGGAGATAATTGTTGCAGATATCAGCACA
TTTGAAATGGAAGCATCATATGACCGAATATACTCCATTGAAATGTTTGA
GCATATGAAGAACTATCAGAATCTTCTCAAGAAGATATCAAAGTGGATGA
AAGAAGACACCCTTCTTTTTGTTCATCATTTCTGCCACAAAACATTTGCC
TATCACTTTGAGGACACAAATGATGATGATTGGATTACAAAATACTTCTT
CACCGGTGGAACAATGCCTTCAGCTAATCTACTTCTTTATTTCCAGGACG
ATGTTTCTGTTGTTGATCACTGGCTTGTGAA
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