FC878247

Overview
NameFC878247
Unique NameFC878247
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length838
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878247_ssr461 microsatellite FC878247_ssr461:461..475. BLAST: Citrus ESTs to Prunus persica proteins V1
FC878247_ssr142 microsatellite FC878247_ssr142:142..161. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC878247 vs. ExPASy Swiss-Prot
Match: SAP3_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 3 OS=Arabidopsis thaliana GN=SAP3 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.615e-39
Identity = 83/152 (54.61%), Postives = 93/152 (61.18%), Query Frame = 2
Query:  293 MAEEHRCQAPRLCVNNCGFFGSPTTQNLCSKCFRDLQLKAQQSSSAKHALNQTLIXXXXXXXXXXVDLSLRERPATDXXXXXXXXXXXXXXXXXXQSTAA----NRCITCRRRVGLTGFKCRCGSVFCGTHRYPEQHACSFDFKEMGKELIA 736
            MAEEHR Q PRLC NNCGFFGS  TQNLCSKCFRDLQ + Q SS+AKHAL Q+L             +S    P  D                  ++        RC+TCRRRVG+TGF+CRCG VFCGTHRY EQH CSFDFK MGK+ IA
Sbjct:    1 MAEEHRLQEPRLCANNCGFFGSTATQNLCSKCFRDLQHQEQNSSTAKHALTQSLAAVGAAASS---SVSPPPPPPADSKEIVEAKSEKRAAAEPEEADGPPQDPKRCLTCRRRVGITGFRCRCGFVFCGTHRYAEQHECSFDFKRMGKDKIA 149          
BLAST of FC878247 vs. ExPASy Swiss-Prot
Match: SAP6_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 6 OS=Arabidopsis thaliana GN=SAP6 PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 9.623e-34
Identity = 76/156 (48.72%), Postives = 87/156 (55.77%), Query Frame = 2
Query:  293 MAEEHRCQAP---RLCVNNCGFFGSPTTQNLCSKCFRDLQLKAQQ-SSSAKHALNQTLIXXXXXXXXXXVDLS----LRERPATDXXXXXXXXXXXXXXXXXXQSTAANRCITCRRRVGLTGFKCRCGSVFCGTHRYPEQHACSFDFKEMGKELIA 736
            MAEEHRCQ P   RLCVNNCGF GS  T NLCS C+ DL LK QQ SSS K  +  +L           +       L + P+                    Q    NRC TCR+RVGLTGFKCRCG++FCG HRYPE H CS+DFK  G+E IA
Sbjct:    1 MAEEHRCQTPESNRLCVNNCGFLGSSATMNLCSNCYGDLCLKQQQQSSSIKSTVESSLSVSPPSSSSSEISSPIIPPLLKNPSVKLEVPEKKAVISLPTTEQNQQQRPNRCTTCRKRVGLTGFKCRCGTMFCGVHRYPEIHGCSYDFKSAGREEIA 156          
BLAST of FC878247 vs. ExPASy Swiss-Prot
Match: SAP4_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 4 OS=Arabidopsis thaliana GN=SAP4 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.096e-32
Identity = 73/151 (48.34%), Postives = 84/151 (55.63%), Query Frame = 2
Query:  293 MAEEHRCQAP---RLCVNNCGFFGSPTTQNLCSKCFRDLQLKAQQSSSAKHALNQTLIXXXXXXXXXXVDLSLRERPATDXXXXXXXXXXXXXXXXXXQSTAANRCITCRRRVGLTGFKCRCGSVFCGTHRYPEQHACSFDFKEMGKELIA 736
            MAEEHRC+ P   RLCVNNCGFFGS  T NLCS C+ DL LK QQ +S K  +  +L              +  E P T                   Q    NRC  CR+RVGLTGF CRCG+ FCG+HRYPE H C+FDFK  G+E IA
Sbjct:    1 MAEEHRCETPEGHRLCVNNCGFFGSSATMNLCSNCYGDLCLKQQQQASMKSTVESSLSPVIAPVLENYA--AELEIPTTKKTEEKKPIQIPTEQPSPPQRP--NRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGCTFDFKSAGREEIA 147          
BLAST of FC878247 vs. ExPASy Swiss-Prot
Match: SAP1_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 1 OS=Arabidopsis thaliana GN=SAP1 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.590e-28
Identity = 58/139 (41.73%), Postives = 79/139 (56.83%), Query Frame = 2
Query:  320 PRLCVNNCGFFGSPTTQNLCSKCFRDLQLKAQQSSSAKHALNQTLIXXXXXXXXXXVDLSLRERPATDXXXXXXXXXXXXXXXXXXQSTAANRCITCRRRVGLTGFKCRCGSVFCGTHRYPEQHACSFDFKEMGKELIA 736
            P+LCV  CGFFGSP+  NLCSKC+RD++   +Q++SAK A+ ++L                +    +                     + A RC++C ++VG+TGFKCRCGS FCGTHRYPE H C FDFK + +E IA
Sbjct:   16 PKLCVKGCGFFGSPSNMNLCSKCYRDIRATEEQTASAKAAVEKSLNPNKPKTQPQQSQEITQGVLGSGSSSSSTRGGDSAAAPLDPPKSTATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFKGVAREAIA 154          
BLAST of FC878247 vs. ExPASy Swiss-Prot
Match: SAP7_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 7 OS=Arabidopsis thaliana GN=SAP7 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.296e-27
Identity = 60/146 (41.10%), Postives = 80/146 (54.79%), Query Frame = 2
Query:  320 PRLCVNNCGFFGSPTTQNLCSKCFRDLQLKAQQSSSAKHALNQTLIXXXXXXXXXXVDLSLRERPA-------TDXXXXXXXXXXXXXXXXXXQSTAANRCITCRRRVGLTGFKCRCGSVFCGTHRYPEQHACSFDFKEMGKELIA 736
            P+LC N CGFFGSP+  NLCSKC+R L+ +  Q++ AK A+  +L               L  +PA       T                        NRC +C ++VG+ GFKC+CGS FCG+HRYPE+H CSFDFKE+G++ IA
Sbjct:   16 PKLCDNGCGFFGSPSNMNLCSKCYRSLRAEEDQTAVAKAAVKNSLKLPSCSIIAPGQKHPLEIKPAHLETVVVTAEPSSVPVAAEQDEAEPSRPVRPNNRCFSCNKKVGVMGFKCKCGSTFCGSHRYPEKHECSFDFKEVGRDAIA 161          
BLAST of FC878247 vs. ExPASy Swiss-Prot
Match: SAP5_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 5 OS=Oryza sativa subsp. japonica GN=SAP5 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.645e-26
Identity = 64/151 (42.38%), Postives = 78/151 (51.66%), Query Frame = 2
Query:  293 MAEEHRCQ--APRLCVNNCGFFGSPTTQNLCSKCFRDLQLKAQQSSSAKHALNQTLIXXXXXXXXXXVDLSLRERPATDXXXXXXXXXXXXXXXXXXQSTA-ANRCITCRRRVGLTGFKCRCGSVFCGTHRYPEQHACSFDFKEMGKELIA 736
            MAEE R Q    RLC NNCGFFGSP T +LCSKC+RD Q +   +     A                   +    P++                    + A A+RC +CR+RVGLTGF CRCG  FCG HRYPE+HAC FDFK  G++ IA
Sbjct:    1 MAEEQRWQEGCHRLCANNCGFFGSPATLDLCSKCYRDRQGRESTAPVVVAAAASAC------------PATHPSSPSSSSCPAFLPSSTAAEAGVVVAAVAKASRCASCRKRVGLTGFACRCGGTFCGAHRYPERHACGFDFKAAGRDAIA 139          
BLAST of FC878247 vs. ExPASy Swiss-Prot
Match: SAP6_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 6 OS=Oryza sativa subsp. japonica GN=SAP6 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.787e-25
Identity = 63/156 (40.38%), Postives = 82/156 (52.56%), Query Frame = 2
Query:  290 KMAEE---HRCQAPRLCVNNCGFFGSPTTQNLCSKCFRD-LQLKAQQSSSAKHALNQTLIXXXXXXXXXXVDLSLRERPATDXXXXXXXXXXXXXXXXXXQSTA---ANRCITCRRRVGLTGFKCRCGSVFCGTHRYPEQHACSFDFKEMGKELIA 736
            K AEE   H  +AP LCVNNCGFFGS  T+N+CSKC+RD ++ K   +   K  L                  SL   P                     + T    +NRC++CR++VGLTGFKCRCG  FC  HRY + H C+FD+K++G+E IA
Sbjct:    8 KEAEETGVHTPEAPILCVNNCGFFGSRMTENMCSKCYRDTVKAKTVATVVEKKPL-----------------ASLSSTPLVTEVTDGGSGSVADGKQVMEEDTPKPPSNRCLSCRKKVGLTGFKCRCGGTFCSMHRYADSHKCTFDYKQVGREQIA 146          
BLAST of FC878247 vs. ExPASy Swiss-Prot
Match: SAP9_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 9 OS=Arabidopsis thaliana GN=SAP9 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.819e-24
Identity = 55/150 (36.67%), Postives = 79/150 (52.67%), Query Frame = 2
Query:  302 EHRCQAPRLCVNNCGFFGSPTTQNLCSKCFRDLQLKAQQSSSAKHALNQTLIXXXXXXXXXXVDLSL-----RERPATDXXXXXXXXXXXXXXXXXXQSTAANRCITCRRRVGLTGFKCRCGSVFCGTHRYPEQHACSFDFKEMGKELIA 736
            + +   P+LCV  CGFFGSP+  +LCSKC+R +  +  Q++ AK A+ ++               ++      E+ A                    +    NRC+ C ++VG+ GFKC+CGS FCG HRYPE H CSFDFKE+G+  IA
Sbjct:   13 QSQASEPKLCVKGCGFFGSPSNMDLCSKCYRGICAEEAQTAVAKAAVEKSFKPSPPRSLFIAEPPAVVVEPKPEKAAVVVVSAEPSSSAVPEANEPSRPARTNRCLCCNKKVGIMGFKCKCGSTFCGEHRYPETHDCSFDFKEVGRGEIA 162          
BLAST of FC878247 vs. ExPASy Swiss-Prot
Match: SAP9_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 9 OS=Oryza sativa subsp. japonica GN=SAP9 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.293e-24
Identity = 56/144 (38.89%), Postives = 75/144 (52.08%), Query Frame = 2
Query:  305 HRCQAPRLCVNNCGFFGSPTTQNLCSKCFRDLQLKAQQSSSAKHALNQTLIXXXXXXXXXXVDLSLRERPATDXXXXXXXXXXXXXXXXXXQSTAANRCITCRRRVGLTGFKCRCGSVFCGTHRYPEQHACSFDFKEMGKELIA 736
            H  +AP LCVNNCGFFGS  T N+CSKC+RD     + ++ A   + +                   E PA                        +NRC++CR++VGLTGF+CRCG  FC THRY E H C+FD+K+ G++ IA
Sbjct:   15 HTPEAPILCVNNCGFFGSSMTNNMCSKCYRDF---VKVTTMAAPVVEKKAFTPASSSKTPLEPAKPDEVPAA--------AVEDKQAAQEPPKPPSNRCLSCRKKVGLTGFQCRCGGTFCSTHRYTEAHDCTFDYKKAGRDQIA 147          
BLAST of FC878247 vs. ExPASy Swiss-Prot
Match: SAP2_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 2 OS=Arabidopsis thaliana GN=SAP2 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 1.179e-23
Identity = 55/152 (36.18%), Postives = 82/152 (53.95%), Query Frame = 2
Query:  314 QAPRLCVNNCGFFGSPTTQNLCSKCFRDLQLKAQQ----------SSSAKHALNQTLIXXXXXXXXXXVD-LSLRERPATDXXXXXXXXXXXXXXXXXXQSTAANRCITCRRRVGLTGFKCRCGSVFCGTHRYPEQHACSFDFKEMGKELIA 736
            + P+LC NNCGFFGS  T N+CSKC +D+  + +Q          +SS+ + + +T            V+ +++  +P++                   +    +RC TC +RVGLTGFKCRCGS+FCGTHRY + H CSF++    +E IA
Sbjct:   13 EGPKLCTNNCGFFGSAATMNMCSKCHKDMLFQQEQGAKFASAVSGTSSSSNIIKETFTAALVDIETKSVEPMTVSVQPSS-----VQVVAEVVAPEEAAKPKGPSRCTTCNKRVGLTGFKCRCGSLFCGTHRYADVHDCSFNYHAAAQEAIA 159          
The following BLAST results are available for this feature:
BLAST of FC878247 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
SAP3_ARATH2.615e-3954.61Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP6_ARATH9.623e-3448.72Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP4_ARATH3.096e-3248.34Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP1_ARATH1.590e-2841.73Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP7_ARATH2.296e-2741.10Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP5_ORYSJ9.645e-2642.38Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP6_ORYSJ4.787e-2540.38Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP9_ARATH1.819e-2436.67Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP9_ORYSJ5.293e-2438.89Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP2_ARATH1.179e-2336.18Zinc finger A20 and AN1 domain-containing stress-a... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA96BB01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA96BB01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878247 ID=FC878247; Name=FC878247; organism=Citrus clementina; type=EST; length=838bp
AGAAGGTGTTGGGAATCTGCAGTCAGGGCCGGGAATCCTCCCCTCAAAAG
GAAAAGAAGAGTTTCTTTTTCCGCGGAGCTGCCTTCCTTCATAAAAAGAG
AAACCCTGCTTTCCTTTCTTTGCCAAAACTCCTTTGCCTTCCTTTCTTTC
TTTCTTTCTTTCCAAAATCCCAATTGCCAAACAGAAGATAAAGACTAATG
CTCCTTATATATTTCCTTTCCAGTCGTCCCTCTTTTGAAAAATCAATCAA
TTTCAGCAAATTATTCCTGAAAATATTGTTTACAGGTTGAAGATGGCGGA
AGAGCACAGATGTCAAGCACCCCGTTTGTGCGTGAACAACTGCGGATTTT
TCGGGAGCCCAACAACTCAAAATCTCTGCTCCAAATGTTTTCGCGATCTT
CAGTTGAAAGCACAACAATCTTCCTCGGCCAAACACGCCCTTAACCAAAC
CCTGATTTCTTCGTCGTCGTCGTCGCCGTCGCCGTCGGTTGATTTGTCTC
TGCGCGAGAGACCGGCGACGGATGTGGAGGTAGCGGCAGAGGCGGAGAAG
CCGCCGGCTGAGGTGGCCGCTCCGGTGCAGTCGACGGCGGCGAACAGGTG
CATAACTTGCAGGAGGCGCGTGGGGCTCACGGGGTTCAAGTGCAGGTGCG
GGTCGGTGTTCTGCGGGACCCACAGGTACCCGGAGCAGCACGCGTGCTCG
TTCGATTTCAAAGAGATGGGCAAAGAGCTGATTGCAGACAAACCCAAGAC
ACAAGAATGGGCAATGAAAGATAGGGATGCTGAGGCAGAGCCATTAAACC
TTTAATTGGTGGACTGAGGACACAAACCACCGGTGATT
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