FC878248

Overview
NameFC878248
Unique NameFC878248
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length772
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14038 contig Ccv1_Contig14038:146..917. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878248 vs. ExPASy Swiss-Prot
Match: TPP2_ARATH (Probable thylakoidal processing peptidase 2, chloroplastic OS=Arabidopsis thaliana GN=TPP2 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.413e-25
Identity = 75/197 (38.07%), Postives = 111/197 (56.35%), Query Frame = 2
Query:  224 MALRVTVNFSGYVAQNLAHSAGIRFGFSTTSTRSFHECLFRPRVFCHSKKTDL-DPPPN---YQPKANYRC-------NTLAAEIFGDGACNSPILMGLVSLMKSTAGMPGPSATSMGVFGISPFKAASIIPFLQGSKWLPCNEPGTV-PESDYVDKGGTT--DKIQFSGSENLNGVSLQLKTSGSWLSKLLNVCSD 772
            MA+RVT  +S YVA+++A SAG R G  T   RS  E   RPR   H++  D+ D  P    + P +  R        +T+A EI  +G C SP+++G++SLM  T     P  + M   GISPFK +S+IPFL+GSKW+PC+ P T+  +   VD+GG     K++   S+ ++           W++KLLN+CS+
Sbjct:    1 MAIRVTFTYSSYVARSIASSAGTRVG--TGDVRSCFETWVRPRFCGHNQIPDIVDKSPGSNTWGPSSGPRARPASSMYSTIAREILEEG-CKSPLVLGMISLMNLTGA---PQFSGMTGLGISPFKTSSVIPFLRGSKWMPCSIPATLSTDIAEVDRGGKVCDPKVKLELSDKVS------NGGNGWVNKLLNICSE 185          
BLAST of FC878248 vs. ExPASy Swiss-Prot
Match: TPP1_ARATH (Thylakoidal processing peptidase 1, chloroplastic OS=Arabidopsis thaliana GN=TPP1 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.274e-23
Identity = 76/183 (41.53%), Postives = 104/183 (56.83%), Query Frame = 2
Query:  224 MALRVTVNFSGYVAQNLAHSAGIRFGFSTTSTRSFHECLFRPRVFCHSKKTDLDPPPNYQPKANYRCNTLAAEIFGDGACNSPILMGLVSLMKSTAGMPGPSATSMGVFGISPFKAASIIPFLQGSKWLPCNEPGTVPESDYVDKGGTTDKIQFSGSENLNGVSLQLKTSGSWLSKLLNVCSD 772
            MA+R+T  +S +VA+NL    G R G          E L RPR F H  K D D  P  +P + Y   ++A E+ G+G+  SP++MGL+S++KST G     +++M V G+S FKA+SIIPFLQGSKW+        P  D VDKGGT         E+ NG S        W++KLL+VCS+
Sbjct:    1 MAIRITFTYSTHVARNLV---GTRVGPGGYC----FESLVRPRFFSH--KRDFDRSPRNRPASMY--GSIARELIGEGS-QSPLVMGLISILKSTTGH---ESSTMNVLGVSSFKASSIIPFLQGSKWIK-----NPPVIDDVDKGGTVCD-DDDDKESRNGGS-------GWVNKLLSVCSE 155          
The following BLAST results are available for this feature:
BLAST of FC878248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TPP2_ARATH5.413e-2538.07Probable thylakoidal processing peptidase 2, chlor... [more]
TPP1_ARATH2.274e-2341.53Thylakoidal processing peptidase 1, chloroplastic ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ7YA02RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ7YA02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878248 ID=FC878248; Name=FC878248; organism=Citrus clementina; type=EST; length=772bp
AACAAAAGCTCGTAAATTTGAGCGCTGATTTTCTCCAAAAAGCAGTCTCA
CATCGGCATCCGGTTTTACACTCTAAGCCTCAATTCAACCTTTCCGCTTC
CGACTCACTGAATCAGCCCGTGACGATGTCGTTTATCAGCTTCTAGATCT
CCTCCGATCAACCCTTTTAATCTCCGAAAGCGCAATTCAACTAATCCTCC
TCAAGCTATTCAAAATCGCAAACATGGCGTTACGTGTCACCGTCAACTTC
TCCGGTTACGTCGCTCAAAACCTCGCCCACTCCGCCGGAATCCGCTTCGG
CTTCTCCACCACCTCCACTCGCTCCTTCCACGAATGCTTGTTTCGCCCTC
GAGTCTTCTGCCATAGCAAAAAAACCGACCTTGATCCGCCCCCAAATTAT
CAGCCCAAAGCAAATTACCGATGTAACACACTCGCCGCCGAAATATTCGG
TGACGGCGCTTGCAACAGTCCGATCCTGATGGGATTGGTCTCGTTGATGA
AGTCAACGGCTGGTATGCCCGGTCCTTCGGCAACCTCCATGGGTGTCTTT
GGGATTTCACCGTTTAAAGCCGCTTCGATTATTCCCTTTCTACAGGGATC
GAAGTGGCTTCCCTGTAACGAGCCGGGCACCGTTCCGGAGAGTGATTACG
TGGATAAAGGAGGGACTACTGATAAAATACAGTTTAGTGGGAGTGAAAAT
CTGAATGGTGTAAGCTTGCAGTTGAAAACAAGCGGAAGTTGGTTATCGAA
GTTGTTGAATGTATGTTCGGAT
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