FC878249

Overview
NameFC878249
Unique NameFC878249
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length901
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878249_ssr199 microsatellite FC878249_ssr199:199..216. BLAST: Citrus ESTs to Prunus persica proteins V1
FC878249_ssr270 microsatellite FC878249_ssr270:270..284. BLAST: Citrus ESTs to Prunus persica proteins V1
FC878249_ssr297 microsatellite FC878249_ssr297:297..314. BLAST: Citrus ESTs to Prunus persica proteins V1
FC878249_ssr317 microsatellite FC878249_ssr317:317..328. BLAST: Citrus ESTs to Prunus persica proteins V1
FC878249_ssr794 microsatellite FC878249_ssr794:794..814. BLAST: Citrus ESTs to Prunus persica proteins V1
FC878249_ssr819 microsatellite FC878249_ssr819:819..830. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig2501 contig Ccv1_Contig2501:38..938. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878249 vs. ExPASy Swiss-Prot
Match: GUN4C_ARATH (Tetrapyrrole-binding protein, chloroplastic OS=Arabidopsis thaliana GN=GUN4 PE=1 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 3.435e-56
Identity = 104/145 (71.72%), Postives = 121/145 (83.45%), Query Frame = 2
Query:  347 FDLLHQHLQAQNFRQADEETRRLLIALAGEAAEKRGYVFFSEVQFIAEADLKAIDELWRQYSDDKFGYSVQKKIWEKVNKDFTKFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKETPVGHLPLTNALRGTQLLASILNHPAF 781
            FD+L  HL  QNFRQADEETRRLLI ++GEAA KRGYVFFSEV+ I+  DL+AID LW ++SD +FGYSVQ+KIW KV KDFT+FF++V WMK LDTE+ QYNYRAFP EF WE   ETP+GHLPLTNALRGTQLL  +L+HPAF
Sbjct:   81 FDVLENHLVNQNFRQADEETRRLLIQISGEAAVKRGYVFFSEVKTISPEDLQAIDNLWIKHSDGRFGYSVQRKIWLKVKKDFTRFFVKVEWMKLLDTEVVQYNYRAFPDEFKWELNDETPLGHLPLTNALRGTQLLKCVLSHPAF 225          
BLAST of FC878249 vs. ExPASy Swiss-Prot
Match: YCF53_PORYE (Uncharacterized protein ycf53 OS=Porphyra yezoensis GN=ycf53 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.534e-22
Identity = 56/150 (37.33%), Postives = 93/150 (62.00%), Query Frame = 2
Query:  335 EPISFDLLHQHLQAQNFRQADEETRRLLIALAGEAAEKRGYVFFSEVQFIAEADLKAIDELWRQYSDDKFGYSVQKKIWEKVNKDFTKFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKETPVGHLPLTNALRGTQLLASILNHPAFE 784
            + +++  L   L  ++  +AD+ T++ LI LAG  A+ R +++F++++ I   DL+ ID+LW  +S  KFG  VQ++IW  V KD+ KF+ ++GW      E+++   R +P EF W +    P GHLPL N LRG Q+L+++  H A+E
Sbjct:   95 QQMNYKDLQMLLTHRDLLKADQLTQQKLIQLAGVNAQTRNWLYFTDIKKIPAQDLQTIDKLWHTHSKGKFGLFVQRQIWLSVGKDWGKFWQKIGW------EVDRIPCR-YPEEFQWNS--HGPRGHLPLFNQLRGVQVLSALFTHKAWE 235          
BLAST of FC878249 vs. ExPASy Swiss-Prot
Match: YCF53_CYACA (Uncharacterized protein ycf53 OS=Cyanidium caldarium GN=ycf53 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.228e-22
Identity = 50/142 (35.21%), Postives = 85/142 (59.86%), Query Frame = 2
Query:  347 FDLLHQHLQAQNFRQADEETRRLLIALAGEAAEKRGYVFFSEVQFIAEADLKAIDELWRQYSDDKFGYSVQKKIWEKVNKDFTKFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKETPVGHLPLTNALRGTQLLASILNH 772
            ++ L   L A NF +A++ T+++L+ LAGE +++R +++F++V  I    +  ++ LW  YS   FG+S+QK+IW  VNK++ KF+ ++GW+           +  +P EF+W      P GHLPL N LRG  +L  I ++
Sbjct:  102 YETLESLLSANNFFEANKFTQQILLELAGEQSKQRNWMYFTDVHSINHQSVSDLNHLWELYSQGNFGFSIQKRIWISVNKNWKKFWKKIGWIN------SNSKWLKYPGEFMW--AVNAPPGHLPLFNQLRGVYVLEFIFDY 235          
BLAST of FC878249 vs. ExPASy Swiss-Prot
Match: YCF53_PORPU (Uncharacterized protein ycf53 OS=Porphyra purpurea GN=ycf53 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.966e-20
Identity = 51/139 (36.69%), Postives = 86/139 (61.87%), Query Frame = 2
Query:  368 LQAQNFRQADEETRRLLIALAGEAAEKRGYVFFSEVQFIAEADLKAIDELWRQYSDDKFGYSVQKKIWEKVNKDFTKFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKETPVGHLPLTNALRGTQLLASILNHPAFE 784
            L   N   AD+ T++ LI LAG   + R +++F++++ I   DL+ ID+LW  +S  KFG+ VQ++IW  + K++ +F+ ++GW      E+ +   R +P EF W +    P GHLPL N LRG Q+L+++ +H A++
Sbjct:  107 LVQNNLIAADKLTQQKLIKLAGVDEKSRNWLYFTDIKKIPVEDLQTIDQLWNAHSKGKFGFFVQRQIWLALEKNWEQFWYKIGW------EINRVPCR-YPEEFHWNS--TGPKGHLPLCNQLRGVQVLSALFSHKAWD 236          
BLAST of FC878249 vs. ExPASy Swiss-Prot
Match: YC53L_SYNY3 (Ycf53-like protein OS=Synechocystis sp. (strain PCC 6803) GN=sll0558 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.180e-20
Identity = 52/142 (36.62%), Postives = 79/142 (55.63%), Query Frame = 2
Query:  356 LHQHLQAQNFRQADEETRRLLIALAGEAAEKRGYVFFSEVQFIAEADLKAIDELWRQYSDDKFGYSVQKKIWEKVNKDFTKFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKETPVGHLPLTNALRGTQLLASILNHPAF 781
            L + L +Q+F  ADE TR  L  LAG  A +R +++F+EV+     DL  I+ LW  +S+  FG+SVQ+++W    K+FTK + ++GW            +  +P  F W+     P GHLPL N LRG ++  S+  HP +
Sbjct:   96 LQEALGSQDFETADEITRDKLCELAGPGASQRQWLYFTEVEKFPALDLHTINALWWLHSNGNFGFSVQRRLWLASGKEFTKLWPKIGW-------KSGNVWTRWPKGFTWD--LSAPQGHLPLLNQLRGVRVAESLYRHPVW 228          
The following BLAST results are available for this feature:
BLAST of FC878249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
GUN4C_ARATH3.435e-5671.72Tetrapyrrole-binding protein, chloroplastic OS=Ara... [more]
YCF53_PORYE5.534e-2237.33Uncharacterized protein ycf53 OS=Porphyra yezoensi... [more]
YCF53_CYACA7.228e-2235.21Uncharacterized protein ycf53 OS=Cyanidium caldari... [more]
YCF53_PORPU3.966e-2036.69Uncharacterized protein ycf53 OS=Porphyra purpurea... [more]
YC53L_SYNY35.180e-2036.62Ycf53-like protein OS=Synechocystis sp. (strain PC... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA74DE05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA74DE05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878249 ID=FC878249; Name=FC878249; organism=Citrus clementina; type=EST; length=901bp
AGTACTTCATTTCTTCCAAATATAAAAAATAAAAACAAAGAAGTAATAAC
GATAACAAACAATAATGGCCACAAACTCTCTCCAATCCCTCCACCACCAC
TCCTTCCTCCGGCGCCACCACCCCGACGCCGCTCCGGCAGCCGCTCTCAA
ACCCACCAACCCAAATTCCCTTTCTTTCTCACTGTCTAATAACAACAATA
CTACTACTACTACTACAACAACTAGTGCAAATACTATGATCACATTCTCA
TCACTTTCCCCATCTACCACTTCTTCTTCTTCTTCATCACAAACATCTAC
TACTACTACTACTACGACAACAACAACAACTTCAGAGCCCATCTCCTTTG
ACCTTCTTCACCAACACTTACAAGCCCAAAACTTCCGGCAAGCCGATGAA
GAAACCCGCCGCCTGCTCATTGCCCTCGCCGGGGAAGCGGCGGAGAAACG
CGGGTACGTCTTCTTCTCTGAAGTTCAGTTCATTGCAGAGGCCGACTTGA
AAGCCATTGACGAACTCTGGAGGCAGTACAGTGACGACAAGTTTGGGTAC
AGCGTTCAGAAGAAGATTTGGGAGAAAGTTAATAAAGATTTTACAAAATT
CTTCATCAGAGTTGGGTGGATGAAGAAGCTGGACACTGAAATGGAGCAGT
ACAATTACAGGGCTTTTCCTACTGAGTTTATTTGGGAGAACGGGAAGGAA
ACTCCCGTGGGGCATTTGCCATTAACAAATGCTTTGAGAGGGACACAGTT
GCTTGCTAGTATCTTGAATCATCCAGCTTTTGAAGGCATGCAAGATGATG
ATGATGATGATGATAAGCAAGAAGAAGAAGTAAGTAAATTTGGTGGTGGT
GATGATAATGGAGTTCTGAAGACAAGCCTTTTGAGCAGAGAGTGTTCGAG
T
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