FC878282

Overview
NameFC878282
Unique NameFC878282
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878282_ssr83 microsatellite FC878282_ssr83:83..94. BLAST: Citrus ESTs to Prunus persica proteins V1
FC878282_ssr581 microsatellite FC878282_ssr581:581..592. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5942 contig Ccv1_Contig5942:145..887. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878282 vs. ExPASy Swiss-Prot
Match: HSF8_SOLPE (Heat shock factor protein HSF8 OS=Solanum peruvianum GN=HSF8 PE=2 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 2.838e-84
Identity = 160/214 (74.77%), Postives = 168/214 (78.50%), Query Frame = 3
Query:  129 ATNAPPPFLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKP---------XXXXXXXXXXXXXXXXXXVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRXXXXXXXXXXXTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQNDSNKR 743
            + NAPPPFL KTYDMVDD +TD IVSWSPT+NSFVVW+PPEFA+DLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLL+SISRRKP                           VGACVEVGKFGLEEEVERLKRDKNVLMQELVRLR            MVQRLQGME R QQMM+FLAKAV SPGFLAQFVQQQN+SNKR
Sbjct:   35 SANAPPPFLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSISRRKPAHGHAQQQQQPHGHAQQQMQPPGHSASVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDNQLQGMVQRLQGMELRQQQMMSFLAKAVNSPGFLAQFVQQQNESNKR 248          
BLAST of FC878282 vs. ExPASy Swiss-Prot
Match: HSF8_SOLLC (Heat shock factor protein HSF8 OS=Solanum lycopersicum GN=HSF8 PE=3 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 1.078e-83
Identity = 159/214 (74.30%), Postives = 167/214 (78.04%), Query Frame = 3
Query:  129 ATNAPPPFLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKP---------XXXXXXXXXXXXXXXXXXVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRXXXXXXXXXXXTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQNDSNKR 743
            + NAPPPFL KTYDMVDD +TD IVSWSPT+NSFVVW+PPEFA+DLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLL+SISRRKP                           VGACVEVGKFGLEEEVERLKRDKNVLMQELVRLR            MVQRLQGME R QQMM+FLAKAV  PGFLAQFVQQQN+SNKR
Sbjct:   33 SANAPPPFLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSISRRKPAHGHAQQQQQPHGNAQQQMQPPGHSASVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQATDNQLQGMVQRLQGMELRQQQMMSFLAKAVNRPGFLAQFVQQQNESNKR 246          
BLAST of FC878282 vs. ExPASy Swiss-Prot
Match: HFA1D_ARATH (Heat stress transcription factor A-1d OS=Arabidopsis thaliana GN=HSFA1D PE=2 SV=2)

HSP 1 Score: 298.516 bits (763), Expect = 2.486e-80
Identity = 152/206 (73.79%), Postives = 163/206 (79.13%), Query Frame = 3
Query:  129 ATNAPPPFLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKP--XXXXXXXXXXXXXXXXXXVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRXXXXXXXXXXXTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQNDSNK 740
            ++NAPPPFLSKTYDMVDD  TDSIVSWS  +NSF+VW PPEFARDLLPK FKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLL+SI+RRKP                    V ACVEVGKFGLEEEVERLKRDKNVLMQELVRLR           TMVQRLQGME R QQ+M+FLAKAVQSP FL+QF+QQQN  N+
Sbjct:   31 SSNAPPPFLSKTYDMVDDHNTDSIVSWSANNNSFIVWKPPEFARDLLPKNFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLQSITRRKPAHGQGQGHQRSQHSNGQNSSVSACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDNQLQTMVQRLQGMENRQQQLMSFLAKAVQSPHFLSQFLQQQNQQNE 236          
BLAST of FC878282 vs. ExPASy Swiss-Prot
Match: HSFA1_ORYSJ (Heat stress transcription factor A-1 OS=Oryza sativa subsp. japonica GN=HSFA1 PE=2 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 3.360e-77
Identity = 144/202 (71.29%), Postives = 160/202 (79.21%), Query Frame = 3
Query:  138 APPPFLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKPXXXXXXXXXXXXXXXXXXVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRXXXXXXXXXXXTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQNDSNKR 743
            APPPFL KTY+MVDD ATD++VSW P +NSFVVWN PEFARDLLPKYFKH+NFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLL++I+RRKP                  V ACVEVGKFG+EEE+E LKRDKNVLMQELVRLR           T+ +RLQGMEQR QQMM+FLAKA+ SPGFLAQFVQQ  +S +R
Sbjct:   34 APPPFLMKTYEMVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKTINRRKP--THGNNQVQQPQLPAAPVPACVEVGKFGMEEEIEMLKRDKNVLMQELVRLRQQQQTTDHQLQTLGKRLQGMEQRQQQMMSFLAKAMHSPGFLAQFVQQNENSRRR 233          
BLAST of FC878282 vs. ExPASy Swiss-Prot
Match: HFA1A_ARATH (Heat stress transcription factor A-1a OS=Arabidopsis thaliana GN=HSFA1A PE=1 SV=2)

HSP 1 Score: 285.804 bits (730), Expect = 1.668e-76
Identity = 143/211 (67.77%), Postives = 163/211 (77.25%), Query Frame = 3
Query:  126 NATNAPPPFLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSISRRK-------PXXXXXXXXXXXXXXXXXXVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRXXXXXXXXXXXTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQNDSN 737
            NA + PPPFLSKTYDMV+D ATD+IVSWSPT+NSF+VW+PPEF+RDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLL+ ISRRK                          + +CVEVGKFGLEEEVE+LKRDKNVLMQELV+LR            +V+ LQ MEQR QQ+M+FLAKAVQ+P FL+QF+Q+Q DSN
Sbjct:   45 NANSLPPPFLSKTYDMVEDPATDAIVSWSPTNNSFIVWDPPEFSRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKKISRRKSVQGHGSSSSNPQSQQLSQGQGSMAALSSCVEVGKFGLEEEVEQLKRDKNVLMQELVKLRQQQQTTDNKLQVLVKHLQVMEQRQQQIMSFLAKAVQNPTFLSQFIQKQTDSN 255          
BLAST of FC878282 vs. ExPASy Swiss-Prot
Match: HFA1E_ARATH (Heat stress transcription factor A-1e OS=Arabidopsis thaliana GN=HSFA1E PE=2 SV=2)

HSP 1 Score: 272.707 bits (696), Expect = 1.461e-72
Identity = 139/199 (69.85%), Postives = 152/199 (76.38%), Query Frame = 3
Query:  144 PPFLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKPXXXXXXXXXXXXXXXXXXVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRXXXXXXXXXXXTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQNDSNK 740
            PPFLSKTYDMVDD  TD +VSWS  +NSFVVWN PEFA+  LPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQK +L+SI RRKP                  VGACVEVGKFGLEEEVERL+RDKNVLMQELVRLR            + Q++  MEQR QQMM+FLAKAVQSPGFL QF QQ N++N+
Sbjct:   22 PPFLSKTYDMVDDPLTDDVVSWSSGNNSFVVWNVPEFAKQFLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKQILKSIVRRKP---AQVQPPQQPQVQHSSVGACVEVGKFGLEEEVERLQRDKNVLMQELVRLRQQQQVTEHHLQNVGQKVHVMEQRQQQMMSFLAKAVQSPGFLNQFSQQSNEANQ 217          
BLAST of FC878282 vs. ExPASy Swiss-Prot
Match: HFA1B_ARATH (Heat stress transcription factor A-1b OS=Arabidopsis thaliana GN=HSFA1B PE=2 SV=2)

HSP 1 Score: 270.781 bits (691), Expect = 5.552e-72
Identity = 139/203 (68.47%), Postives = 154/203 (75.86%), Query Frame = 3
Query:  135 NAPPPFLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKPXXXXXXXXXXXXXXXXXXVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRXXXXXXXXXXXTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQNDSNKR 743
            N+ PPFLSKTYDMVDD  T+ +VSWS  +NSFVVW+ PEF++ LLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRG+K LL+SI RRKP                  VGACVEVGKFG+EEEVERLKRDKNVLMQELVRLR            + Q++Q MEQR QQMM+FLAKAVQSPGFL Q VQQ N+   R
Sbjct:   23 NSVPPFLSKTYDMVDDPLTNEVVSWSSGNNSFVVWSAPEFSKVLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGRKQLLKSIVRRKP--SHVQQNQQQTQVQSSSVGACVEVGKFGIEEEVERLKRDKNVLMQELVRLRQQQQATENQLQNVGQKVQVMEQRQQQMMSFLAKAVQSPGFLNQLVQQNNNDGNR 223          
BLAST of FC878282 vs. ExPASy Swiss-Prot
Match: HFA2B_ORYSJ (Heat stress transcription factor A-2b OS=Oryza sativa subsp. japonica GN=HSFA2B PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 5.758e-61
Identity = 117/194 (60.31%), Postives = 138/194 (71.13%), Query Frame = 3
Query:  141 PPPFLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKPXXXXXXXXXXXXXXXXXXVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRXXXXXXXXXXXTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQ 722
            PPPFL+KTYDMVDD  TD+ VSWS TSNSFVVW+P  FA  LLP++FKHNNFSSFVRQLNTYGFRKVDPDRWEFANE FLRGQ+HLL++I RRKP                  +G  +EVG FG + E++RLKRDK +LM E+V+LR            M  RLQG EQR QQMMAFLA+ +++P FL Q + Q
Sbjct:   50 PPPFLTKTYDMVDDAGTDAAVSWSATSNSFVVWDPHAFATVLLPRFFKHNNFSSFVRQLNTYGFRKVDPDRWEFANENFLRGQRHLLKNIKRRKP--------PSHTASNQQSLGPYLEVGHFGYDAEIDRLKRDKQLLMAEVVKLRQEQQNTKANLKAMEDRLQGTEQRQQQMMAFLARVMKNPEFLKQLMSQ 235          
BLAST of FC878282 vs. ExPASy Swiss-Prot
Match: HFA2E_ORYSJ (Heat stress transcription factor A-2e OS=Oryza sativa subsp. japonica GN=HSFA2E PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.283e-60
Identity = 115/198 (58.08%), Postives = 140/198 (70.71%), Query Frame = 3
Query:  129 ATNAPPPFLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKPXXXXXXXXXXXXXXXXXXVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRXXXXXXXXXXXTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQ 722
            A   PPPFL+KTYDMVDD  TD++VSWS T+NSFVVW+P  F   LLP+YFKHNNFSSFVRQLNTYGFRKVDPD+WEFANEGFLRGQKHLL+SI RRKP                  +G+ +EVG FG E E+++LKRDK++LM E+V+LR            M Q+LQG EQ+ Q MMAFL++ + +P F+ Q   Q
Sbjct:   32 ADGGPPPFLTKTYDMVDDPTTDAVVSWSATNNSFVVWDPHLFGNVLLPRYFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEGFLRGQKHLLKSIKRRKP---------PNSSPSQQSLGSFLEVGHFGYEGEIDQLKRDKHLLMAEVVKLRQEQQNTKSDLQAMEQKLQGTEQKQQHMMAFLSRVMHNPEFIRQLFSQ 220          
BLAST of FC878282 vs. ExPASy Swiss-Prot
Match: HFA2C_ORYSJ (Heat stress transcription factor A-2c OS=Oryza sativa subsp. japonica GN=HSFA2C PE=2 SV=2)

HSP 1 Score: 229.95 bits (585), Expect = 1.086e-59
Identity = 113/195 (57.95%), Postives = 139/195 (71.28%), Query Frame = 3
Query:  141 PPPFLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKPXXXXXXXXXXXXXXXXXXVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRXXXXXXXXXXXTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQ 725
            PPPFL+KTYD+V+D ATD +VSWS   NSFVVW+P  FA  LLP+ FKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQ+HLL++I RRKP                  + +C+EVG+FG EEE++RLKRDKN+L+ E+V+LR            M  RL+  EQ+  QMM FLA+A+++P F  Q  QQ+
Sbjct:   40 PPPFLTKTYDLVEDPATDGVVSWSRAGNSFVVWDPHVFADLLLPRLFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLKTIKRRKP-------PSNAPPSQQQSLTSCLEVGEFGFEEEIDRLKRDKNILITEVVKLRQEQQATKDHVKAMEDRLRAAEQKQVQMMGFLARAMRNPEFFQQLAQQK 227          
The following BLAST results are available for this feature:
BLAST of FC878282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
HSF8_SOLPE2.838e-8474.77Heat shock factor protein HSF8 OS=Solanum peruvian... [more]
HSF8_SOLLC1.078e-8374.30Heat shock factor protein HSF8 OS=Solanum lycopers... [more]
HFA1D_ARATH2.486e-8073.79Heat stress transcription factor A-1d OS=Arabidops... [more]
HSFA1_ORYSJ3.360e-7771.29Heat stress transcription factor A-1 OS=Oryza sati... [more]
HFA1A_ARATH1.668e-7667.77Heat stress transcription factor A-1a OS=Arabidops... [more]
HFA1E_ARATH1.461e-7269.85Heat stress transcription factor A-1e OS=Arabidops... [more]
HFA1B_ARATH5.552e-7268.47Heat stress transcription factor A-1b OS=Arabidops... [more]
HFA2B_ORYSJ5.758e-6160.31Heat stress transcription factor A-2b OS=Oryza sat... [more]
HFA2E_ORYSJ1.283e-6058.08Heat stress transcription factor A-2e OS=Oryza sat... [more]
HFA2C_ORYSJ1.086e-5957.95Heat stress transcription factor A-2c OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ7YA09RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ7YA09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878282 ID=FC878282; Name=FC878282; organism=Citrus clementina; type=EST; length=743bp
TTTTAGTGTGATTAATTCACGAATTTGTTAGCATGGATGGAGCCGCCAAC
AGGGGCGGAGGCGCTGGTGATCCATCGGCGACTGGTGGTGGTGGTACGCC
TCCATCGCAGCCGACCCCTGTGCAGAATGCTACGAATGCACCACCGCCGT
TTCTGAGCAAAACTTATGACATGGTGGATGATCTGGCGACGGACTCGATA
GTGTCTTGGAGCCCTACCAGCAACAGCTTCGTCGTTTGGAACCCTCCGGA
GTTCGCGCGTGACCTCCTTCCTAAGTACTTCAAGCACAACAACTTTTCTA
GCTTTGTTCGCCAGTTAAACACTTACGGTTTTAGAAAAGTTGATCCGGAC
CGCTGGGAATTCGCAAATGAGGGCTTTTTACGTGGTCAAAAGCACCTGCT
TCGGAGTATTAGTAGGAGAAAACCTGCGCACGGACATGGTCATCAGCAGT
CACATCAACAAAATGCACAAAGTTCTTCCGTGGGTGCTTGTGTTGAAGTT
GGGAAATTTGGGCTTGAGGAAGAAGTAGAGAGGCTTAAGAGGGACAAGAA
CGTGCTTATGCAGGAACTTGTTAGGTTGAGGCAGCAGCAGCAGGCTACTG
ATAGCCAGCTGCAAACCATGGTTCAACGTCTTCAGGGGATGGAGCAGCGG
CACCAGCAAATGATGGCATTCCTGGCAAAAGCTGTGCAGAGCCCTGGTTT
CCTAGCCCAGTTTGTACAGCAACAAAATGATAGCAATAAACGG
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