FC878283

Overview
NameFC878283
Unique NameFC878283
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length858
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878283_ssr372 microsatellite FC878283_ssr372:372..383. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12561 contig Ccv1_Contig12561:149..1006. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878283 vs. ExPASy Swiss-Prot
Match: PLSP1_ARATH (Chloroplast processing peptidase OS=Arabidopsis thaliana GN=PLSP1 PE=2 SV=2)

HSP 1 Score: 238.81 bits (608), Expect = 2.946e-62
Identity = 130/216 (60.19%), Postives = 149/216 (68.98%), Query Frame = 3
Query:  234 NPNFVNFQHQN----PRPLN---PKNLLYR-LNCNKLKSSGEETKSVVNTXXXXXXXXXXXXXXXXXXXXXXXXXXALPGWLNITSDDAKTVLAALVISLAFRSFVAEPRYIPSLSMYPTFDVGDRIVAEKVTYYFRKPCSNDIVIFKSPPVLQEVGYTDDDVFIKRVVAKEGDVVEVREGKLIVNGVVRNEDYILEAPSYNMTPITVPENSVFVM 857
            NPNF+ F  ++    P+ LN     NL  R L+C  +K S E TKS  +                             P WL+ TSDDA+TV  A+ +SLAFR F+AEPRYIPSLSMYPTFDVGDR+VAEKV+YYFRKPC+NDIVIFKSPPVLQEVGYTD DVFIKR+VAKEGD+VEV  GKL+VNGV RNE +ILE P Y MTPI VPENSVFVM
Sbjct:   30 NPNFIQFTPKSQLLFPQRLNFNTGTNLNRRTLSCYGIKDSSETTKSAPSLDSGDGGGGDGGDDDKGEVEEKNRL---FPEWLDFTSDDAQTVFVAIAVSLAFRYFIAEPRYIPSLSMYPTFDVGDRLVAEKVSYYFRKPCANDIVIFKSPPVLQEVGYTDADVFIKRIVAKEGDLVEVHNGKLMVNGVARNEKFILEPPGYEMTPIRVPENSVFVM 242          
BLAST of FC878283 vs. ExPASy Swiss-Prot
Match: TPP1_ARATH (Thylakoidal processing peptidase 1, chloroplastic OS=Arabidopsis thaliana GN=TPP1 PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 1.423e-40
Identity = 82/144 (56.94%), Postives = 108/144 (75.00%), Query Frame = 3
Query:  447 GWLN----ITSDDAKTVLAALVISLAFRSFVAEPRYIPSLSMYPTFDVGDRIVAEKVTYYFRKPCSNDIVIFKSPPVL---QEVGYTDDDVFIKRVVAKEGDVVEVREGKLIVNGVVRNEDYILEAPSYNMTPITVPENSVFVM 857
            GW+N    + S+DAK    A+ +S+ FRS +AEP+ IPS SMYPT D GDR++AEKV+Y+FRKP  +DIVIFK+PP+L    E GY+ +DVFIKR+VA EGD VEVR+GKL VN +V+ ED++LE  SY M P+ VP+  VFV+
Sbjct:  144 GWVNKLLSVCSEDAKAAFTAVTVSILFRSALAEPKSIPSTSMYPTLDKGDRVMAEKVSYFFRKPEVSDIVIFKAPPILLEYPEYGYSSNDVFIKRIVASEGDWVEVRDGKLFVNDIVQEEDFVLEPMSYEMEPMFVPKGYVFVL 287          
BLAST of FC878283 vs. ExPASy Swiss-Prot
Match: TPP2_ARATH (Probable thylakoidal processing peptidase 2, chloroplastic OS=Arabidopsis thaliana GN=TPP2 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.858e-40
Identity = 84/141 (59.57%), Postives = 105/141 (74.47%), Query Frame = 3
Query:  447 GW----LNITSDDAKTVLAALVISLAFRSFVAEPRYIPSLSMYPTFDVGDRIVAEKVTYYFRKPCSNDIVIFKSPPVLQEVGYTDDDVFIKRVVAKEGDVVEVREGKLIVNGVVRNEDYILEAPSYNMTPITVPENSVFVM 857
            GW    LNI S+DAK    A+ +SL FRS +AEP+ IPS SM PT DVGDR++AEKV+Y+FRKP  +DIVIFK+PP+L E GY+  DVFIKR+VA EGD VEV +GKL+VN  V+ ED++LE   Y M P+ VPE  VFV+
Sbjct:  174 GWVNKLLNICSEDAKAAFTAVTVSLLFRSALAEPKSIPSTSMLPTLDVGDRVIAEKVSYFFRKPEVSDIVIFKAPPILVEHGYSCADVFIKRIVASEGDWVEVCDGKLLVNDTVQAEDFVLEPIDYEMEPMFVPEGYVFVL 314          
BLAST of FC878283 vs. ExPASy Swiss-Prot
Match: LEP1_SYNY3 (Probable signal peptidase I-1 OS=Synechocystis sp. (strain PCC 6803) GN=lepB1 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.131e-28
Identity = 64/139 (46.04%), Postives = 85/139 (61.15%), Query Frame = 3
Query:  441 LPGWLNITSDDAKTVLAALVISLAFRSFVAEPRYIPSLSMYPTFDVGDRIVAEKVTYYFRKPCSNDIVIFKSPPVLQEVGYTDDDVFIKRVVAKEGDVVEVREGKLIVNGVVRNEDYILEAPSYNMTPITVPENSVFVM 857
            +P       ++   ++ ALV++L  R FVAEPRYIPS SM PT + GDR+V EKV+Y+F  P   DI++F  P +LQ  GY     FIKRV+A  G  VEV  G +  +G    E+YILE P YN+  + VP+  VFVM
Sbjct:    6 IPSPWQFIKENIPLLMVALVLALLLRFFVAEPRYIPSDSMLPTLEQGDRLVVEKVSYHFHPPQVGDIIVFHPPELLQVQGYDLGQAFIKRVIALPGQTVEVNNGIVYRDGQPLQEEYILEPPQYNLPAVRVPDGQVFVM 144          
BLAST of FC878283 vs. ExPASy Swiss-Prot
Match: LEP_PHOLA (Signal peptidase I OS=Phormidium laminosum GN=lepB PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.005e-23
Identity = 51/127 (40.16%), Postives = 80/127 (62.99%), Query Frame = 3
Query:  477 KTVLAALVISLAFRSFVAEPRYIPSLSMYPTFDVGDRIVAEKVTYYFRKPCSNDIVIFKSPPVLQEVGYTDDDVFIKRVVAKEGDVVEVREGKLIVNGVVRNEDYILEAPSYNMTPITVPENSVFVM 857
            KT+  ++V++L  R+FVAE RYIPS SM PT +V DR++ EK++Y+F  P   DI++F     L++   + ++ FIKRV+   G+ V+V  G++++NG    E+YI   P Y   P  VP +S  V+
Sbjct:   33 KTIGLSVVLALGIRTFVAEARYIPSESMLPTLEVNDRLIVEKISYHFNPPRRGDIIVFHPTEALKQQNPSLNEAFIKRVIGLPGETVQVTGGRVLINGQPLEENYIQSPPDYQWGPEKVPADSFLVL 159          
BLAST of FC878283 vs. ExPASy Swiss-Prot
Match: LEP2_SYNY3 (Probable signal peptidase I-2 OS=Synechocystis sp. (strain PCC 6803) GN=lepB2 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.024e-22
Identity = 52/136 (38.24%), Postives = 82/136 (60.29%), Query Frame = 3
Query:  450 WLNITSDDAKTVLAALVISLAFRSFVAEPRYIPSLSMYPTFDVGDRIVAEKVTYYFRKPCSNDIVIFKSPPVLQEVGYTDDDVFIKRVVAKEGDVVEVREGKLIVNGVVRNEDYILEAPSYNMTPITVPENSVFVM 857
            WL +     KT++ A+++++  R+FVAE RYIPS SM PT  + DR++ EK++Y  R P   +IV+F     L+   +   D FIKR++   GD V V +G + VNG + +E+YI   P+Y   P+ VP++   V+
Sbjct:   21 WLEL----GKTMVTAVILAIGIRTFVAEARYIPSSSMEPTLQINDRLIIEKISYRLRDPERGEIVVFNPTDALKAKNF--HDAFIKRIIGLPGDEVRVSQGNVYVNGKMLDENYIAAPPAYEYGPVKVPDDQYLVL 150          
BLAST of FC878283 vs. ExPASy Swiss-Prot
Match: LEP_MYCLE (Probable signal peptidase I OS=Mycobacterium leprae GN=lepB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.886e-11
Identity = 53/167 (31.74%), Postives = 75/167 (44.91%), Query Frame = 3
Query:  483 VLAALVISLAF--RSFVAEPRYIPSLSMYPTFD-----VGDRIVAEKVTYYFRKPCSNDIVIFKSPP---------------------VLQEVGYT--DDDVFIKRVVAKEGDVVEVR-EGKLIVNGVVRNEDYILEAP-----------SYNMTPITVPENSVFVM 857
            +LA + I L +   +FVA P  IPS SM PT       VGDRI+ +K+TY F  P   D+++FK PP                      L  VG+   D++  +KRV+A  G  V+ R +  L VNG    E Y+                    P+TVP+  ++VM
Sbjct:   58 ILAVIAIGLYYVMLTFVARPYLIPSESMEPTLHGCSGCVGDRIMVDKITYRFSSPQPGDVIVFKGPPSWNTMYKSIRSNNIVLRSVQNALSFVGFVPPDENDLVKRVIAVGGQTVQCRSDTGLTVNGKPLKEPYLRPVTMNADLSFSPCLGSEFGPVTVPQGRLWVM 224          
The following BLAST results are available for this feature:
BLAST of FC878283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PLSP1_ARATH2.946e-6260.19Chloroplast processing peptidase OS=Arabidopsis th... [more]
TPP1_ARATH1.423e-4056.94Thylakoidal processing peptidase 1, chloroplastic ... [more]
TPP2_ARATH1.858e-4059.57Probable thylakoidal processing peptidase 2, chlor... [more]
LEP1_SYNY32.131e-2846.04Probable signal peptidase I-1 OS=Synechocystis sp.... [more]
LEP_PHOLA6.005e-2340.16Signal peptidase I OS=Phormidium laminosum GN=lepB... [more]
LEP2_SYNY31.024e-2238.24Probable signal peptidase I-2 OS=Synechocystis sp.... [more]
LEP_MYCLE6.886e-1131.74Probable signal peptidase I OS=Mycobacterium lepra... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA50AB09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA50AB09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878283 ID=FC878283; Name=FC878283; organism=Citrus clementina; type=EST; length=858bp
AGGATAAGCGTTGAGTGGAGATGATGATATCTCTAAATCTCCTATCTACG
CTGCCTTCCCTTCAGAACCCTAATTTCACTTCTACCCAATCTTCCAACCC
TCTCAAAAACCCTAATTTTGCTGCAAAACCTTTTTCCAAGTCCCTCAAAA
ACCCTTATTTCACAATCCTCAACCTGCACCCAAAATCAAACCCACCCCAG
TTTTCACGCACCCGTTGGCCCTTTGTCTCTATAAATCCCAACTTTGTTAA
CTTTCAGCACCAAAATCCTAGGCCCTTGAACCCCAAAAATTTACTTTACA
GACTGAACTGTAATAAATTGAAAAGCTCCGGGGAAGAGACCAAATCAGTT
GTTAATACTGGTAGTGGTGGAGGCGGCGGCGGCGACGGCGGAGGTGGTGA
CGGTAGCGATGATGAAGAGGCGGAGGGGCAAAGTGGGGCATTGCCAGGAT
GGTTGAATATCACTTCTGATGATGCAAAAACAGTTTTGGCGGCGCTGGTT
ATTTCACTTGCTTTTCGGTCGTTTGTGGCCGAGCCAAGGTACATTCCTTC
GTTGTCGATGTATCCTACGTTTGATGTTGGAGATCGAATTGTTGCAGAAA
AGGTTACCTACTATTTCAGAAAGCCATGCTCAAATGATATAGTAATTTTC
AAAAGTCCACCGGTTCTTCAGGAAGTAGGATACACTGATGATGATGTCTT
TATTAAACGAGTTGTTGCCAAGGAAGGCGATGTTGTAGAGGTTCGTGAAG
GGAAACTTATAGTTAATGGAGTTGTAAGAAATGAAGACTATATCTTGGAG
GCCCCTTCTTATAACATGACACCAATTACTGTACCGGAGAACTCGGTCTT
TGTTATGG
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