FC878285

Overview
NameFC878285
Unique NameFC878285
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length870
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10928 contig Ccv1_Contig10928:75..944. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878285 vs. ExPASy Swiss-Prot
Match: DHAS_AQUAE (Aspartate-semialdehyde dehydrogenase OS=Aquifex aeolicus GN=asd PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.722e-42
Identity = 96/201 (47.76%), Postives = 130/201 (64.68%), Query Frame = 2
Query:  272 FLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT-EDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVLEGKP-PTCKIFSQQYAFNLFSHNAPVLENGYNEEE 868
            FL VL +R+FP   + + AS+RS GK L+F+ K YTV+ L  E+SF G+DIALFSAGGS SK++ P   + G +V+DNSSA+RM  +VPLV+PEVNPE +   K    K  +IANPNCSTI  ++A  P++ +A + R+VVSTYQ         +E+L+ QT+   EGK  P  + F  Q AFN   H     E+GY +EE
Sbjct:   18 FLKVLEERNFPVDELVLYASERSEGKVLTFKGKEYTVKALNKENSFKGIDIALFSAGGSTSKEWAPKFAKDGVVVIDNSSAWRMDPDVPLVVPEVNPEDVKDFK----KKGIIANPNCSTIQMVVALKPIYDKAGIKRVVVSTYQAVSGAGAKAIEDLKNQTKAWCEGKEMPKAQKFPHQIAFNALPHIDVFFEDGYTKEE 214          
BLAST of FC878285 vs. ExPASy Swiss-Prot
Match: DHAS_PROMA (Aspartate-semialdehyde dehydrogenase OS=Prochlorococcus marinus GN=asd PE=3 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 9.439e-40
Identity = 87/200 (43.50%), Postives = 127/200 (63.50%), Query Frame = 2
Query:  269 EFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEE 868
            E L +L +R FP R +++LAS+RSAG+   F+ +   V++++ + F+ VD+ L SAGGSIS+K+  +    G+++VDNS+A+RM  +VPLV+PEVNP      +V   KG LIANPNC+TI+  +   PL  +  + R+VVSTYQ         M EL+  +++VL G  P  +I     AFNLF HN+P+  N Y EEE
Sbjct:   26 EILKILEERSFPIRELRLLASERSAGQVQFFKGEDLVVKKVSPEGFEDVDLVLASAGGSISRKWRKVINSAGAVIVDNSNAYRMEPDVPLVVPEVNPS-----QVFTHKG-LIANPNCTTILLALVLAPLSAQLPIKRVVVSTYQSASGAGARAMNELKQLSQDVLNGNIPKSEILPYSLAFNLFLHNSPLQSNNYCEEE 219          
BLAST of FC878285 vs. ExPASy Swiss-Prot
Match: DHAS_VIBCH (Aspartate-semialdehyde dehydrogenase OS=Vibrio cholerae GN=asd PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 3.357e-37
Identity = 85/201 (42.29%), Postives = 119/201 (59.20%), Query Frame = 2
Query:  266 QEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEE 868
            +  L VL +R+FP   + +LAS+RS GK   F  K   V+ + E  +  V IALFSAGG +S K+ PIA E G +V+DN+S FR   ++PLV+PEVNPEA++  +       +IANPNCSTI  L+A  P++    + R+ V+TYQ         ++EL  QT ++L G P     FSQQ AFN        ++NGY +EE
Sbjct:   18 ETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDWSQVHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAEFR----NRNIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLLNGYPAETNTFSQQIAFNCIPQIDQFMDNGYTKEE 214          
BLAST of FC878285 vs. ExPASy Swiss-Prot
Match: DHAS_LEGPN (Aspartate-semialdehyde dehydrogenase OS=Legionella pneumophila GN=asd PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.385e-37
Identity = 82/201 (40.80%), Postives = 122/201 (60.70%), Query Frame = 2
Query:  266 QEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEE 868
            + FL+VL +R+FP +S+  LAS RS GK ++F+D+   V +L E  F  VD+ALFSAGG++SK++ P AV  G +VVDN+S FR  +++PLV+    P + S       K  +IANPNCSTI  ++A  P++    ++R+ V+TYQ         + EL  Q  ++L G+P   +++ QQ AFN   H     +NGY  EE
Sbjct:   18 ETFLTVLEERNFPIKSLYPLASSRSVGKTVTFRDQELDVLDLAEFDFSKVDLALFSAGGAVSKEYAPKAVAAGCVVVDNTSCFRYEDDIPLVV----PGSESSSNRDYTKRGIIANPNCSTIQMVVALKPIYDAVGISRINVATYQSVSGTGKKAISELVAQVGDLLNGRPANVQVYPQQIAFNALPHIDQFEDNGYTREE 214          
BLAST of FC878285 vs. ExPASy Swiss-Prot
Match: DHAS_VIBMI (Aspartate-semialdehyde dehydrogenase (Fragment) OS=Vibrio mimicus GN=asd PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.848e-36
Identity = 84/201 (41.79%), Postives = 117/201 (58.21%), Query Frame = 2
Query:  266 QEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEE 868
            +  L VL +R+FP   + +LAS+RS GK   F  K   V+ + E  +  V IALFSAGG +S  + PI  E G +V+DN+S FR   ++PLVIPEVNPEA++  +       +IANPNCSTI  L+A  P++    + R+ V+TYQ         ++EL  QT ++L G P     FSQQ AFN        ++NGY +EE
Sbjct:   18 ETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDWSQVHIALFSAGGELSAHWAPIRAEAGVVVIDNTSHFRYDYDIPLVIPEVNPEAIAEFR----NRNIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLLNGYPAETNTFSQQIAFNCIPQIDQFMDNGYTKEE 214          
BLAST of FC878285 vs. ExPASy Swiss-Prot
Match: DHAS_SHESP (Aspartate-semialdehyde dehydrogenase OS=Shewanella sp. (strain DB6705) GN=asd PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.080e-35
Identity = 81/201 (40.30%), Postives = 120/201 (59.70%), Query Frame = 2
Query:  266 QEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEE 868
            Q  + +L +R+FP   +  LAS RSAG  +SF  K   + ++ +  +    I  FSAGG +S+K+ PIA E G +V+DN+S FR   +VPLVIPEVNPEA++  +       +IANPNCSTI  L+A  P++    ++R+ V+TYQ         + EL  Q  ++L+G P   K++S+Q AFN+       +ENGY +EE
Sbjct:   18 QTIIEILQERNFPIAKLFPLASSRSAGGTVSFNGKQVEILDVDDFDWSQAQIGFFSAGGDVSEKWAPIAAESGCVVIDNTSHFRYDNDVPLVIPEVNPEAIADFR----NRNIIANPNCSTIQMLVALKPIYDAFGISRINVATYQSVSGSGKEAIAELAGQCSKLLQGLPIEPKVYSKQIAFNVLPQIDTFMENGYTKEE 214          
BLAST of FC878285 vs. ExPASy Swiss-Prot
Match: DHAS_SHEVI (Aspartate-semialdehyde dehydrogenase OS=Shewanella violacea GN=asd PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.842e-35
Identity = 80/201 (39.80%), Postives = 118/201 (58.71%), Query Frame = 2
Query:  266 QEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEE 868
            Q  + +L +R+FP   +  LAS RSAG  +SF  K   + ++ +  +    I  FSAGG +S+K+ PIA E G +V+DN+S FR   +VPLVIPEVNPEA++  +       +IANPNCSTI  L+A  P++    ++R+ V+TYQ         + EL  Q  ++L G P   K++ +Q AFN+       +ENGY +EE
Sbjct:   18 QTMIEILEERNFPVAKLFPLASSRSAGGTVSFNGKQVEILDVDDFDWSQAQIGFFSAGGDVSEKWAPIAAENGCVVIDNTSQFRYDNDVPLVIPEVNPEAIADFR----NRNIIANPNCSTIQMLVALKPIYDAFGISRINVATYQSVSGSGKEAITELAGQCSKLLHGLPAESKVYPKQIAFNVLPQIDKFMENGYTKEE 214          
BLAST of FC878285 vs. ExPASy Swiss-Prot
Match: DHAS_BACSU (Aspartate-semialdehyde dehydrogenase OS=Bacillus subtilis GN=asd PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 7.000e-35
Identity = 84/208 (40.38%), Postives = 124/208 (59.62%), Query Frame = 2
Query:  266 QEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVLEGKPPTCKIF-------SQQYAFNLFSHNAPVLENGYNEEE 868
            Q+ L  L DR+F   ++ +L+SKRSAG +++F+ +  TV+E + +SF+GV+IALFSAGGS+S+   P AV++G+IV+DN+SAFRM EN PLV+PEVN   +           +IANPNCSTI  + A  P+ +   + +++VSTYQ         ++EL  QT+ +L  +    +I          Q AFN         +NGY  EE
Sbjct:   18 QQMLKTLEDRNFEMDTLTLLSSKRSAGTKVTFKGQELTVQEASPESFEGVNIALFSAGGSVSQALAPEAVKRGAIVIDNTSAFRMDENTPLVVPEVNEADLH------EHNGIIANPNCSTIQMVAALEPIRKAYGLNKVIVSTYQAVSGAGNEAVKELYSQTQAILNKEEIEPEIMPVKGDKKHYQIAFNAIPQIDKFQDNGYTFEE 219          
BLAST of FC878285 vs. ExPASy Swiss-Prot
Match: DHAS_CAMJE (Aspartate-semialdehyde dehydrogenase OS=Campylobacter jejuni GN=asd PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 4.537e-34
Identity = 88/208 (42.31%), Postives = 121/208 (58.17%), Query Frame = 2
Query:  266 QEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF--DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVL-----EGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEE 868
            +E L+VL + DFP  SI  LAS +S G ++ F+ KAY V+ELTE+ F  + +DIA FSAGGS+S+K+   AVE G++V+DN+S FRM ++VPLV+PE NPE +   K    K  +IANPNCSTI  +    PL+    + R+ VSTYQ         M+EL    +        E +P T   F    A NL       ++N Y +EE
Sbjct:   18 EELLNVLDELDFPVESILPLASAKSVGSEVEFKGKAYKVKELTENVFKENPIDIAFFSAGGSVSEKYAKFAVESGAVVIDNTSHFRMEKDVPLVVPECNPEDIKDWK----KTGIIANPNCSTIQMVQVLKPLNDAFNLKRVDVSTYQAASGAGKEGMQELVEAMQSFFAFKLDEFEPQT---FPYTLALNLIPQIDVFMDNDYTKEE 218          
BLAST of FC878285 vs. ExPASy Swiss-Prot
Match: DHAS_SYNY3 (Aspartate-semialdehyde dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=asd PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.320e-33
Identity = 74/156 (47.44%), Postives = 101/156 (64.74%), Query Frame = 2
Query:  401 SFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEE 868
            +F G D+ L SAGGS SK++     + G+++VDNSSAFRMV  VPLV+PE+NPEA    +       +IANPNC+TI+  +A  PLH+   + R+VV+TYQ         MEE++ Q+R++LEGK P  +I     AFNLF HN+P+  N Y EEE
Sbjct:    5 AFKGCDLVLASAGGSTSKRWAEEITKAGAVMVDNSSAFRMVPEVPLVVPEINPEAAQNHQ------GIIANPNCTTILMGVAIYPLHQLQPIKRIVVATYQSASGAGAMAMEEVKHQSRDILEGKIPQAEILPYPLAFNLFPHNSPITANHYCEEE 154          
The following BLAST results are available for this feature:
BLAST of FC878285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
DHAS_AQUAE7.722e-4247.76Aspartate-semialdehyde dehydrogenase OS=Aquifex ae... [more]
DHAS_PROMA9.439e-4043.50Aspartate-semialdehyde dehydrogenase OS=Prochloroc... [more]
DHAS_VIBCH3.357e-3742.29Aspartate-semialdehyde dehydrogenase OS=Vibrio cho... [more]
DHAS_LEGPN4.385e-3740.80Aspartate-semialdehyde dehydrogenase OS=Legionella... [more]
DHAS_VIBMI4.848e-3641.79Aspartate-semialdehyde dehydrogenase (Fragment) OS... [more]
DHAS_SHESP1.080e-3540.30Aspartate-semialdehyde dehydrogenase OS=Shewanella... [more]
DHAS_SHEVI1.842e-3539.80Aspartate-semialdehyde dehydrogenase OS=Shewanella... [more]
DHAS_BACSU7.000e-3540.38Aspartate-semialdehyde dehydrogenase OS=Bacillus s... [more]
DHAS_CAMJE4.537e-3442.31Aspartate-semialdehyde dehydrogenase OS=Campylobac... [more]
DHAS_SYNY31.320e-3347.44Aspartate-semialdehyde dehydrogenase OS=Synechocys... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA29CE12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA29CE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878285 ID=FC878285; Name=FC878285; organism=Citrus clementina; type=EST; length=870bp
CTCCGATTCAGACCCCACAGACGATCTTTGAAGCAACCAAAAACCCCATA
TCTGTTTCCAACTATCAAACTCAAAACCTCACTAGCCGCCATCCGCCGCC
GCAGCAAACATGGCGACTTTCTCGTCACATCAAACACAGACCCACTTCAT
ATCCAAACTGCCCGCCAACAAACCCAGAACCAAACCCATGTTCACAAGAG
TCCGAATGTCCTACCAAGAATCGGCACCCTCCGTGGCGGTCGTCGGCGTG
ACTGGCGCCGTCGGCCAAGAGTTCCTCTCCGTCCTCTCCGATCGCGACTT
CCCTTACCGTTCGATCAAAATGCTGGCCTCCAAGCGTTCTGCTGGGAAGC
AACTCAGCTTCCAAGACAAAGCGTACACGGTCGAAGAGCTAACGGAGGAT
AGCTTTGATGGCGTTGATATCGCGCTGTTTAGTGCTGGTGGGTCGATCAG
TAAGAAGTTTGGGCCTATTGCTGTCGAGAAAGGGAGCATTGTTGTGGATA
ATAGCTCGGCTTTTAGGATGGTGGAGAATGTGCCGCTTGTGATTCCTGAA
GTGAATCCTGAAGCCATGAGTGGGATTAAAGTTGGAATGGGGAAAGGTGC
TTTGATTGCTAATCCTAATTGTTCTACTATCATTTGCTTGATGGCTGCCA
CGCCTCTCCATCGCCGTGCTAAGGTTACACGTATGGTGGTAAGTACATAT
CAGGCTGCTAGTGGTGCTGGTGCTGCTGCAATGGAAGAACTTGAGCTGCA
AACTCGTGAGGTGCTGGAAGGAAAACCTCCAACTTGTAAAATCTTTTCAC
AACAGTATGCTTTCAATTTGTTCTCACACAATGCACCTGTTCTTGAAAAT
GGGTACAATGAAGAAGAGAT
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