FC878291

Overview
NameFC878291
Unique NameFC878291
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length859
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878291_ssr226 microsatellite FC878291_ssr226:226..237. BLAST: Citrus ESTs to Prunus persica proteins V1
FC878291_ssr20 microsatellite FC878291_ssr20:20..31. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11840 contig Ccv1_Contig11840:9..867. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878291 vs. ExPASy Swiss-Prot
Match: M2K4_ARATH (Mitogen-activated protein kinase kinase 4 OS=Arabidopsis thaliana GN=MKK4 PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.380e-51
Identity = 104/183 (56.83%), Postives = 128/183 (69.95%), Query Frame = 1
Query:  310 RRRPDLTLPIPQRDPSLAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLINPAELQKGNRIGSGSGGTVWRVVHPPTSRVFALKVIYGNHEDSVRSQICREIEILRDVNHPNVVKCHDMYDRNGEIEVLLEYMDGGSLEGAHIRQEHILSDLARQVLSGLAYLHKRKILH 858
            RRRPDLTLP+PQRD SLAV                                            N ++L +GNRIGSG+GGTV++V+H P+SR++ALKVIYGNHE++VR QICREIEILRDVNHPNVVKCH+M+D+NGEI+VLLE+MD GSLEGAH+ +E  L+DL+RQ+LSGLAYLH R I+H
Sbjct:   19 RRRPDLTLPLPQRDVSLAVPLPLPPTSGGSGGSSGSAPSSGGSASSTNTNSSIEAK-------NYSDLVRGNRIGSGAGGTVYKVIHRPSSRLYALKVIYGNHEETVRRQICREIEILRDVNHPNVVKCHEMFDQNGEIQVLLEFMDKGSLEGAHVWKEQQLADLSRQILSGLAYLHSRHIVH 194          
BLAST of FC878291 vs. ExPASy Swiss-Prot
Match: M2K5_ARATH (Mitogen-activated protein kinase kinase 5 OS=Arabidopsis thaliana GN=MKK5 PE=1 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 5.796e-50
Identity = 103/183 (56.28%), Postives = 124/183 (67.76%), Query Frame = 1
Query:  310 RRRPDLTLPIPQRDPSLAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLINPAELQKGNRIGSGSGGTVWRVVHPPTSRVFALKVIYGNHEDSVRSQICREIEILRDVNHPNVVKCHDMYDRNGEIEVLLEYMDGGSLEGAHIRQEHILSDLARQVLSGLAYLHKRKILH 858
            R+RPDL+LP+P RD +LAV                                              +EL++ NRIGSG+GGTV++V+H PTSR FALKVIYGNHED+VR QICREIEILR V+HPNVVKCHDM+D NGEI+VLLE+MD GSLEGAHI QE  L+DL+RQ+LSGLAYLH+R I+H
Sbjct:   19 RKRPDLSLPLPHRDVALAVPLPLPPPSSSSSAPASSSAISTNISAAKSL----------------SELERVNRIGSGAGGTVYKVIHTPTSRPFALKVIYGNHEDTVRRQICREIEILRSVDHPNVVKCHDMFDHNGEIQVLLEFMDQGSLEGAHIWQEQELADLSRQILSGLAYLHRRHIVH 185          
BLAST of FC878291 vs. ExPASy Swiss-Prot
Match: MP2K1_XENLA (Dual specificity mitogen-activated protein kinase kinase 1 OS=Xenopus laevis GN=map2k1 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.882e-16
Identity = 46/122 (37.70%), Postives = 77/122 (63.11%), Query Frame = 1
Query:  508 ELQKGNRIGSGSGGTVWRVVHPPTSRVFALKVIYGNHEDSVRSQICREIEILRDVNHPNVVKCHDMYDRNGEIEVLLEYMDGGSLE----GAHIRQEHILSDLARQVLSGLAYL-HKRKILH 858
            + +K + +G+G+GG V++V H PTS + A K+I+   + ++R+QI RE+++L + N P +V  +  +  +GEI + +E+MDGGSL+     A    E IL  ++  V+ GL YL  K KI+H
Sbjct:   67 DFEKVSELGAGNGGVVFKVSHKPTSLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGKIPEKILGKVSIAVIKGLTYLREKHKIMH 188          
BLAST of FC878291 vs. ExPASy Swiss-Prot
Match: MP2K1_CRIGR (Dual specificity mitogen-activated protein kinase kinase 1 OS=Cricetulus griseus GN=MAP2K1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.152e-16
Identity = 45/122 (36.89%), Postives = 77/122 (63.11%), Query Frame = 1
Query:  508 ELQKGNRIGSGSGGTVWRVVHPPTSRVFALKVIYGNHEDSVRSQICREIEILRDVNHPNVVKCHDMYDRNGEIEVLLEYMDGGSLE----GAHIRQEHILSDLARQVLSGLAYL-HKRKILH 858
            + +K + +G+G+GG V++V H P+  V A K+I+   + ++R+QI RE+++L + N P +V  + ++  +GEI + +E+MDGGSL+     A    E IL  ++  V+ GL YL  K KI+H
Sbjct:   67 DFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGVFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMH 188          
BLAST of FC878291 vs. ExPASy Swiss-Prot
Match: MP2K1_RAT (Dual specificity mitogen-activated protein kinase kinase 1 OS=Rattus norvegicus GN=Map2k1 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.220e-15
Identity = 45/122 (36.89%), Postives = 76/122 (62.30%), Query Frame = 1
Query:  508 ELQKGNRIGSGSGGTVWRVVHPPTSRVFALKVIYGNHEDSVRSQICREIEILRDVNHPNVVKCHDMYDRNGEIEVLLEYMDGGSLE----GAHIRQEHILSDLARQVLSGLAYL-HKRKILH 858
            + +K + +G+G+GG V++V H P+  V A K+I+   + ++R+QI RE+++L + N P +V  +  +  +GEI + +E+MDGGSL+     A    E IL  ++  V+ GL YL  K KI+H
Sbjct:   67 DFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMH 188          
BLAST of FC878291 vs. ExPASy Swiss-Prot
Match: MP2K1_RABIT (Dual specificity mitogen-activated protein kinase kinase 1 OS=Oryctolagus cuniculus GN=MAP2K1 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.220e-15
Identity = 45/122 (36.89%), Postives = 76/122 (62.30%), Query Frame = 1
Query:  508 ELQKGNRIGSGSGGTVWRVVHPPTSRVFALKVIYGNHEDSVRSQICREIEILRDVNHPNVVKCHDMYDRNGEIEVLLEYMDGGSLE----GAHIRQEHILSDLARQVLSGLAYL-HKRKILH 858
            + +K + +G+G+GG V++V H P+  V A K+I+   + ++R+QI RE+++L + N P +V  +  +  +GEI + +E+MDGGSL+     A    E IL  ++  V+ GL YL  K KI+H
Sbjct:   67 DFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMH 188          
BLAST of FC878291 vs. ExPASy Swiss-Prot
Match: MP2K1_PANTR (Dual specificity mitogen-activated protein kinase kinase 1 OS=Pan troglodytes GN=MAP2K1 PE=2 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 1.220e-15
Identity = 45/122 (36.89%), Postives = 76/122 (62.30%), Query Frame = 1
Query:  508 ELQKGNRIGSGSGGTVWRVVHPPTSRVFALKVIYGNHEDSVRSQICREIEILRDVNHPNVVKCHDMYDRNGEIEVLLEYMDGGSLE----GAHIRQEHILSDLARQVLSGLAYL-HKRKILH 858
            + +K + +G+G+GG V++V H P+  V A K+I+   + ++R+QI RE+++L + N P +V  +  +  +GEI + +E+MDGGSL+     A    E IL  ++  V+ GL YL  K KI+H
Sbjct:   67 DFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMH 188          
BLAST of FC878291 vs. ExPASy Swiss-Prot
Match: MP2K1_MOUSE (Dual specificity mitogen-activated protein kinase kinase 1 OS=Mus musculus GN=Map2k1 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.220e-15
Identity = 45/122 (36.89%), Postives = 76/122 (62.30%), Query Frame = 1
Query:  508 ELQKGNRIGSGSGGTVWRVVHPPTSRVFALKVIYGNHEDSVRSQICREIEILRDVNHPNVVKCHDMYDRNGEIEVLLEYMDGGSLE----GAHIRQEHILSDLARQVLSGLAYL-HKRKILH 858
            + +K + +G+G+GG V++V H P+  V A K+I+   + ++R+QI RE+++L + N P +V  +  +  +GEI + +E+MDGGSL+     A    E IL  ++  V+ GL YL  K KI+H
Sbjct:   67 DFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMH 188          
BLAST of FC878291 vs. ExPASy Swiss-Prot
Match: MP2K1_HUMAN (Dual specificity mitogen-activated protein kinase kinase 1 OS=Homo sapiens GN=MAP2K1 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.220e-15
Identity = 45/122 (36.89%), Postives = 76/122 (62.30%), Query Frame = 1
Query:  508 ELQKGNRIGSGSGGTVWRVVHPPTSRVFALKVIYGNHEDSVRSQICREIEILRDVNHPNVVKCHDMYDRNGEIEVLLEYMDGGSLE----GAHIRQEHILSDLARQVLSGLAYL-HKRKILH 858
            + +K + +G+G+GG V++V H P+  V A K+I+   + ++R+QI RE+++L + N P +V  +  +  +GEI + +E+MDGGSL+     A    E IL  ++  V+ GL YL  K KI+H
Sbjct:   67 DFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMH 188          
BLAST of FC878291 vs. ExPASy Swiss-Prot
Match: MP2K1_SERCA (Dual specificity mitogen-activated protein kinase kinase 1 (Fragment) OS=Serinus canaria GN=MAP2K1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.593e-15
Identity = 44/122 (36.07%), Postives = 76/122 (62.30%), Query Frame = 1
Query:  508 ELQKGNRIGSGSGGTVWRVVHPPTSRVFALKVIYGNHEDSVRSQICREIEILRDVNHPNVVKCHDMYDRNGEIEVLLEYMDGGSLE----GAHIRQEHILSDLARQVLSGLAYL-HKRKILH 858
            + +K + +G+G+GG V++V H P+  + A K+I+   + ++R+QI RE+++L + N P +V  +  +  +GEI + +E+MDGGSL+     A    E IL  ++  V+ GL YL  K KI+H
Sbjct:   60 DFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMH 181          
The following BLAST results are available for this feature:
BLAST of FC878291 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
M2K4_ARATH1.380e-5156.83Mitogen-activated protein kinase kinase 4 OS=Arabi... [more]
M2K5_ARATH5.796e-5056.28Mitogen-activated protein kinase kinase 5 OS=Arabi... [more]
MP2K1_XENLA1.882e-1637.70Dual specificity mitogen-activated protein kinase ... [more]
MP2K1_CRIGR7.152e-1636.89Dual specificity mitogen-activated protein kinase ... [more]
MP2K1_RAT1.220e-1536.89Dual specificity mitogen-activated protein kinase ... [more]
MP2K1_RABIT1.220e-1536.89Dual specificity mitogen-activated protein kinase ... [more]
MP2K1_PANTR1.220e-1536.89Dual specificity mitogen-activated protein kinase ... [more]
MP2K1_MOUSE1.220e-1536.89Dual specificity mitogen-activated protein kinase ... [more]
MP2K1_HUMAN1.220e-1536.89Dual specificity mitogen-activated protein kinase ... [more]
MP2K1_SERCA1.593e-1536.07Dual specificity mitogen-activated protein kinase ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ7YA10RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ7YA10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878291 ID=FC878291; Name=FC878291; organism=Citrus clementina; type=EST; length=859bp
CTCTCTCCATTTTTCCTTCCAAACAAACAAAAGCTCATGGTATGGATTCT
TAACAACAAAATCAAACCACCGAAAATCTCATTACATCTTCCAATCCAAT
GATCATTTCTTGCGTGAAAAAAATTCAACCTTTCTTTCATTAAAAAAAAA
ATTTAAAACAAATTCACCTTCAACTCCGTTTTACACCGAGACTAGCCGGC
GTAATCATCGATGAGACCTGTTCTACCGCCGCCGCCGAGCGGCTTATCCT
CCTCGTCCTCTTCCTCGTCCTCCTCTCCGTCGTCATCATTGGCCAATCGC
AGAGGTCAACGCCGGAGACCGGACCTCACGCTGCCAATCCCGCAGCGGGA
CCCATCCTTGGCCGTCCCCCTTCCGTTACCGCCGACGTCAAACTCGTCCT
CTTCCTCCGGTCAGTCGACGAGCCACCAGAACCACCACCCTCACCAGCAG
CAGCAAAACCAAACTCAGAACAACCACCAGAACCGGCACCAGCTCATCAA
CCCGGCTGAGCTCCAGAAAGGAAACCGAATCGGCAGCGGCAGCGGCGGCA
CGGTCTGGAGAGTCGTCCACCCGCCGACGTCGCGCGTGTTCGCGCTCAAG
GTAATATACGGTAACCACGAGGACTCCGTCAGATCTCAGATCTGCCGTGA
AATCGAGATCCTCCGCGACGTTAATCACCCTAACGTCGTTAAGTGTCACG
ACATGTACGACCGTAACGGCGAGATAGAGGTCCTGTTAGAGTACATGGAC
GGTGGATCCCTAGAAGGGGCCCACATAAGACAGGAGCACATATTATCTGA
TTTAGCTAGACAAGTATTAAGTGGATTAGCGTATTTACACAAACGAAAAA
TCCTACACC
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