FC878297

Overview
NameFC878297
Unique NameFC878297
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length829
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10512 contig Ccv1_Contig10512:1..827. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878297 vs. ExPASy Swiss-Prot
Match: SKI23_ARATH (F-box protein SKIP23 OS=Arabidopsis thaliana GN=SKIP23 PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.554e-44
Identity = 106/256 (41.41%), Postives = 152/256 (59.38%), Query Frame = 2
Query:   98 MADWSQLPTDLLGLIAKRLDTSFDLFRFRHVCTTWRSSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRTVFVIRSPH------NATSWLIKVKEDES--NRKHLLNPLKRHRF----DFAKVLDIQNLSLLEIGHEYVLNYINYPPNSLNDACTLYMEKLILMHLDQKSDLGGFVLLTIHVSGKLAIYTSENKDWVILEQMPSPYDDVILFKGKFYAVDNTGRIVYVDHSCFDVNLVANPVFGGDKKYLV 829
            M DWS LP DLL LI+K L++SFDL +FR VC++WRS+                                  +R++ +I+ PH      ++  WLIKV+ED +   +  LL+PL   R     +F +VLD+    + E+G E+ L+Y N   + +    +LY+EK ++ +LD   D   FVLLTIHVSGKLA++ S ++ W ++  MPSPYDDV+LF G+F+AVDN GR V VD+S   + LVA+PVFGGDKK+L+
Sbjct:    1 MVDWSTLPKDLLDLISKSLESSFDLIQFRSVCSSWRSAAEPKSPLPTHHLPILPDNGGSLFPDSAVGFRLS-QRSILLIK-PHEPCIESDSFGWLIKVEEDLNVPRKVTLLDPLCDTRNSIPENFPRVLDMSKFKVRELGREFKLHYFNTVGDIVE---SLYLEKAVVKYLDCDGDYK-FVLLTIHVSGKLAVFRSWDRAWTVINDMPSPYDDVMLFDGRFFAVDNNGRTVVVDYSSLKLTLVASPVFGGDKKFLI 250          
BLAST of FC878297 vs. ExPASy Swiss-Prot
Match: FB110_ARATH (F-box protein At2g17036 OS=Arabidopsis thaliana GN=At2g17036 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.461e-26
Identity = 81/257 (31.52%), Postives = 133/257 (51.75%), Query Frame = 2
Query:   98 MADWSQLPTDLLGLIAKRLDTSFDLFRFRHVCTTWRSSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRTVFVIRSPH-----NATSWLIKVKED--ESNRKHLLNPLKRHRFDFA----KVLDIQNLSLLEIGHEYVLNYINYPPNSLNDACTLYMEKLILMHLDQKSDLGGFVLLTIHVSGKLAIYTSENKDWVIL-EQMPSPYDDVILFKGKFYAVDNTGRIVYVDHSCFDVNLVANPVF-GGDKKYLV 829
            M DW+ LP DLL LI+K L++SFDL +FR VC++WRS+                                   +++ +I+        +   W++KV ++   S +  LL PL   R  F     ++ D+   ++ E+  E  L + +Y     + A  L + K ++ +L+       FVLLTI   GKLA++ S +++W ++ + +PS   D+I+F G+F+A+D  GR V VD+S F + L ANP+  GGDKK+L+
Sbjct:    1 MMDWATLPKDLLDLISKCLESSFDLIQFRSVCSSWRSAAGPKRLLWAHNLPFFPSDDKPFLSNVILRVAH---QSILLIKPNEPQCEADLFGWIVKVWDNIYVSRKMTLLKPLSSSRNYFPQHLPRIFDMSKFTVRELCREVKLYHPDYYCVPGHTALELELGKTVVKYLNDDK----FVLLTILEYGKLAVFRSWDREWTVINDYIPSRCQDLIMFDGRFFAIDYNGRTVVVDYSSFKLTLAANPLIGGGDKKFLI 250          
BLAST of FC878297 vs. ExPASy Swiss-Prot
Match: FK112_ARATH (Putative F-box/kelch-repeat protein At5g24040 OS=Arabidopsis thaliana GN=At5g24040 PE=4 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.389e-13
Identity = 62/232 (26.72%), Postives = 105/232 (45.26%), Query Frame = 2
Query:   98 MADWSQLPTDLLGLIAKRLDTSFDLFRFRHVCTTWRSSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRTVFVIRSPH--NATSWLIKVKEDESNRKHLLNPLKRHRFDFA-------KVLDIQNLSLLEIGHEYVLNYINYPPNSLNDACTLYMEKLILMHLDQKSDLGGFVLLTIHVSGKLAIYTSENKDWVILEQMP-SPYDDVILFKGKFYAVDNTGRIVYVD 763
            M  WS+LP ++L LI+ ++D  FDL  FR VC+ WRSS                                     V++++ P+      W+ K++  E N + +L+ L   R   A         +D+ N  + E+  E+V  Y  +    L +  +   E++  M L+++ +   +++L       LA+Y S +  W  LE  P S ++ ++ FKGKFYA+D TG+   VD
Sbjct:    1 MVKWSELPPEILHLISLKIDNPFDLIHFRSVCSFWRSS-----SLLKFRHMTSLRCPLPLDPGGCGDDCHILSSRVYLLKCPNRDRPQYWMFKLQAKE-NGEVVLHSLFLRRNSSAYGCLYPSLSIDLLNCQIFELAQEHVACYSEW--FELFECISKCEERIGFMGLNREKN--EYMILGKLSFNGLAMYRSVDNRWTELEITPDSFFEGIVPFKGKFYAIDRTGKTTVVD 222          
BLAST of FC878297 vs. ExPASy Swiss-Prot
Match: FB295_ARATH (Putative F-box protein At5g60060 OS=Arabidopsis thaliana GN=At5g60060 PE=4 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.327e-11
Identity = 66/261 (25.29%), Postives = 114/261 (43.68%), Query Frame = 2
Query:   89 TLLMADWSQLPTDLLGLIAKRLD----TSFDLFRFRHVCTTWRSSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRTVFVIRSPHNATSWLIKVKEDESNRKHLLNPLKRHRF-----DFAKVLDIQNLSLLEIGHEYVLNYINYPPNSLNDACTLYMEKLILMHLDQKSDLGGFVLLTIHVSGKLAIYTSENKD-WVILEQMPSP-YDDVILFK-GKFYAVDNTGRIVYVDHSCFDVNLVANPVF--GGDKKYLV 829
            +LL + WS LP D+L LI+ RLD     +  L   R VC TWR S+                                 +  V+ + +P N  + L+K++E       +L+     R      +F   +D+Q   +  +   Y + Y N    ++    +L+ +K++++   + S      ++ IH  GKL    S N + W IL+   +  Y+D++L+K  +   VD+ G+ V  D   F V+ +A  +   GG KK+LV
Sbjct:    5 SLLPSQWSDLPLDILELISDRLDHDSSDTIHLLCLRSVCATWRLSLPLSNKNNRLSKFPKYLPFWSSSSSSSGFFTLK-QSNVYKLEAPLNPRTCLVKLQETTPGIMRVLDLFSNDRICFLPENFPSKIDLQEFHVRLVRRTYRMEYANNGGGAVPCFWSLHSDKVVILSSGEDS-----AIIAIHSGGKLGFLKSGNDEKWKILDNSWNVIYEDIMLYKDNRCIVVDDKGKTVIYDVD-FKVSDLAEGLVGGGGHKKHLV 258          
The following BLAST results are available for this feature:
BLAST of FC878297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SKI23_ARATH1.554e-4441.41F-box protein SKIP23 OS=Arabidopsis thaliana GN=SK... [more]
FB110_ARATH1.461e-2631.52F-box protein At2g17036 OS=Arabidopsis thaliana GN... [more]
FK112_ARATH5.389e-1326.72Putative F-box/kelch-repeat protein At5g24040 OS=A... [more]
FB295_ARATH1.327e-1125.29Putative F-box protein At5g60060 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA24CD04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA24CD04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878297 ID=FC878297; Name=FC878297; organism=Citrus clementina; type=EST; length=829bp
CACGGTTCTTCCTCTTCATTTCCATTACTTTCCGTTCAATTCTCCTTCAC
TTCCCTGAGAAAAAAAAATAATAATAAAACACAAAGAAACTCTCCTCATG
GCAGACTGGTCGCAGCTCCCGACAGACCTCCTAGGCCTAATTGCCAAACG
CCTGGACACCTCCTTCGACCTCTTCCGCTTCCGCCACGTATGCACCACGT
GGCGCTCCTCCGTTACACCAACACGCCGCCGTTTCCCTGGTCGATTCCCG
CTCCTCCCGAACGAAAACAACAGTAAGAATTTCTTCAGCTCCTCGTTCGG
TTTCTCCCTTTCGAAACGCACAGTTTTCGTCATCCGATCGCCGCACAACG
CGACGAGCTGGCTGATCAAAGTGAAAGAAGACGAATCTAATAGAAAGCAC
TTGCTGAATCCACTGAAACGACACCGTTTCGATTTTGCTAAGGTATTGGA
CATCCAAAATCTCAGCTTGCTGGAAATTGGACATGAATATGTGCTGAATT
ACATAAATTACCCTCCGAATTCATTAAATGATGCTTGTACTTTATACATG
GAGAAGCTAATTTTGATGCATTTAGATCAAAAAAGTGATCTTGGTGGATT
TGTGTTGCTTACTATACACGTGTCTGGTAAATTAGCTATATACACGAGTG
AAAACAAAGATTGGGTTATATTAGAACAGATGCCCTCACCGTATGATGAC
GTGATATTATTCAAAGGCAAATTTTACGCTGTTGATAATACAGGGAGGAT
TGTTTATGTTGATCATTCTTGTTTTGATGTGAATTTGGTTGCAAATCCTG
TGTTTGGTGGCGACAAAAAGTATTTGGTT
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