FC878297
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC878297 vs. ExPASy Swiss-Prot
Match: SKI23_ARATH (F-box protein SKIP23 OS=Arabidopsis thaliana GN=SKIP23 PE=1 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 1.554e-44 Identity = 106/256 (41.41%), Postives = 152/256 (59.38%), Query Frame = 2 Query: 98 MADWSQLPTDLLGLIAKRLDTSFDLFRFRHVCTTWRSSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRTVFVIRSPH------NATSWLIKVKEDES--NRKHLLNPLKRHRF----DFAKVLDIQNLSLLEIGHEYVLNYINYPPNSLNDACTLYMEKLILMHLDQKSDLGGFVLLTIHVSGKLAIYTSENKDWVILEQMPSPYDDVILFKGKFYAVDNTGRIVYVDHSCFDVNLVANPVFGGDKKYLV 829 M DWS LP DLL LI+K L++SFDL +FR VC++WRS+ +R++ +I+ PH ++ WLIKV+ED + + LL+PL R +F +VLD+ + E+G E+ L+Y N + + +LY+EK ++ +LD D FVLLTIHVSGKLA++ S ++ W ++ MPSPYDDV+LF G+F+AVDN GR V VD+S + LVA+PVFGGDKK+L+ Sbjct: 1 MVDWSTLPKDLLDLISKSLESSFDLIQFRSVCSSWRSAAEPKSPLPTHHLPILPDNGGSLFPDSAVGFRLS-QRSILLIK-PHEPCIESDSFGWLIKVEEDLNVPRKVTLLDPLCDTRNSIPENFPRVLDMSKFKVRELGREFKLHYFNTVGDIVE---SLYLEKAVVKYLDCDGDYK-FVLLTIHVSGKLAVFRSWDRAWTVINDMPSPYDDVMLFDGRFFAVDNNGRTVVVDYSSLKLTLVASPVFGGDKKFLI 250
BLAST of FC878297 vs. ExPASy Swiss-Prot
Match: FB110_ARATH (F-box protein At2g17036 OS=Arabidopsis thaliana GN=At2g17036 PE=2 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.461e-26 Identity = 81/257 (31.52%), Postives = 133/257 (51.75%), Query Frame = 2 Query: 98 MADWSQLPTDLLGLIAKRLDTSFDLFRFRHVCTTWRSSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRTVFVIRSPH-----NATSWLIKVKED--ESNRKHLLNPLKRHRFDFA----KVLDIQNLSLLEIGHEYVLNYINYPPNSLNDACTLYMEKLILMHLDQKSDLGGFVLLTIHVSGKLAIYTSENKDWVIL-EQMPSPYDDVILFKGKFYAVDNTGRIVYVDHSCFDVNLVANPVF-GGDKKYLV 829 M DW+ LP DLL LI+K L++SFDL +FR VC++WRS+ +++ +I+ + W++KV ++ S + LL PL R F ++ D+ ++ E+ E L + +Y + A L + K ++ +L+ FVLLTI GKLA++ S +++W ++ + +PS D+I+F G+F+A+D GR V VD+S F + L ANP+ GGDKK+L+ Sbjct: 1 MMDWATLPKDLLDLISKCLESSFDLIQFRSVCSSWRSAAGPKRLLWAHNLPFFPSDDKPFLSNVILRVAH---QSILLIKPNEPQCEADLFGWIVKVWDNIYVSRKMTLLKPLSSSRNYFPQHLPRIFDMSKFTVRELCREVKLYHPDYYCVPGHTALELELGKTVVKYLNDDK----FVLLTILEYGKLAVFRSWDREWTVINDYIPSRCQDLIMFDGRFFAIDYNGRTVVVDYSSFKLTLAANPLIGGGDKKFLI 250
BLAST of FC878297 vs. ExPASy Swiss-Prot
Match: FK112_ARATH (Putative F-box/kelch-repeat protein At5g24040 OS=Arabidopsis thaliana GN=At5g24040 PE=4 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 5.389e-13 Identity = 62/232 (26.72%), Postives = 105/232 (45.26%), Query Frame = 2 Query: 98 MADWSQLPTDLLGLIAKRLDTSFDLFRFRHVCTTWRSSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRTVFVIRSPH--NATSWLIKVKEDESNRKHLLNPLKRHRFDFA-------KVLDIQNLSLLEIGHEYVLNYINYPPNSLNDACTLYMEKLILMHLDQKSDLGGFVLLTIHVSGKLAIYTSENKDWVILEQMP-SPYDDVILFKGKFYAVDNTGRIVYVD 763 M WS+LP ++L LI+ ++D FDL FR VC+ WRSS V++++ P+ W+ K++ E N + +L+ L R A +D+ N + E+ E+V Y + L + + E++ M L+++ + +++L LA+Y S + W LE P S ++ ++ FKGKFYA+D TG+ VD Sbjct: 1 MVKWSELPPEILHLISLKIDNPFDLIHFRSVCSFWRSS-----SLLKFRHMTSLRCPLPLDPGGCGDDCHILSSRVYLLKCPNRDRPQYWMFKLQAKE-NGEVVLHSLFLRRNSSAYGCLYPSLSIDLLNCQIFELAQEHVACYSEW--FELFECISKCEERIGFMGLNREKN--EYMILGKLSFNGLAMYRSVDNRWTELEITPDSFFEGIVPFKGKFYAIDRTGKTTVVD 222
BLAST of FC878297 vs. ExPASy Swiss-Prot
Match: FB295_ARATH (Putative F-box protein At5g60060 OS=Arabidopsis thaliana GN=At5g60060 PE=4 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.327e-11 Identity = 66/261 (25.29%), Postives = 114/261 (43.68%), Query Frame = 2 Query: 89 TLLMADWSQLPTDLLGLIAKRLD----TSFDLFRFRHVCTTWRSSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRTVFVIRSPHNATSWLIKVKEDESNRKHLLNPLKRHRF-----DFAKVLDIQNLSLLEIGHEYVLNYINYPPNSLNDACTLYMEKLILMHLDQKSDLGGFVLLTIHVSGKLAIYTSENKD-WVILEQMPSP-YDDVILFK-GKFYAVDNTGRIVYVDHSCFDVNLVANPVF--GGDKKYLV 829 +LL + WS LP D+L LI+ RLD + L R VC TWR S+ + V+ + +P N + L+K++E +L+ R +F +D+Q + + Y + Y N ++ +L+ +K++++ + S ++ IH GKL S N + W IL+ + Y+D++L+K + VD+ G+ V D F V+ +A + GG KK+LV Sbjct: 5 SLLPSQWSDLPLDILELISDRLDHDSSDTIHLLCLRSVCATWRLSLPLSNKNNRLSKFPKYLPFWSSSSSSSGFFTLK-QSNVYKLEAPLNPRTCLVKLQETTPGIMRVLDLFSNDRICFLPENFPSKIDLQEFHVRLVRRTYRMEYANNGGGAVPCFWSLHSDKVVILSSGEDS-----AIIAIHSGGKLGFLKSGNDEKWKILDNSWNVIYEDIMLYKDNRCIVVDDKGKTVIYDVD-FKVSDLAEGLVGGGGHKKHLV 258 The following BLAST results are available for this feature:
BLAST of FC878297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878297 ID=FC878297; Name=FC878297; organism=Citrus clementina; type=EST; length=829bpback to top |