FC878300
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC878300 vs. ExPASy Swiss-Prot
Match: GLSN_MEDSA (Glutamate synthase [NADH], amyloplastic OS=Medicago sativa PE=1 SV=1) HSP 1 Score: 437.573 bits (1124), Expect = 4.372e-122 Identity = 216/286 (75.52%), Postives = 241/286 (84.27%), Query Frame = 3 Query: 3 NDAIVLAVGSTKPRDLPVPGRDLSGIHFAMEFLHSNTKSLLDSNLEDDSYISAXXXXXXXXXXXXXXXXXXXXSIRHGCSSIVNLELLPQPPQTRAPGNPWPQWPRVFRVDYGHQEVAAKFGKDPRSYEVLTKRFIGDENGVVKGLEIVRVHWEKDASGKFQFKEVEGSEEIIGADLVLLAMGFLGPEATVAEKLGLERDNRSNFKAEYGRFATSVDGVFAAGDCRRGQSLVVWAISEGRQAAAQVDNYLSSSSDSQEEDFVKMQQGFTKRPQDLNKK-QQHIVMT 857 NDAIVLAVG+TKPRDLPVPGR+LSG+HFAMEFLH+NTKSLLDSNL+D +YISA SIRHGC+++VNLELLPQPP TRAPGNPWPQWPR+FRVDYGHQE KFGKDPR+YEVLTKRF+GDENGVVKGLE+VRV WEKD +GKFQFKE+EGSEEII ADLVLLAMGFLGPEAT+AEKLG+ERDNRSNFKA+YGRF+TSVDGVFAAGDCRRGQSLVVWAISEGRQAAAQVD+YL++ + + Q F KR QDLNKK +H VMT Sbjct: 1913 NDAIVLAVGATKPRDLPVPGRELSGVHFAMEFLHANTKSLLDSNLQDGNYISAKGKKVVVIGGGDTGTDCIGTSIRHGCTAVVNLELLPQPPPTRAPGNPWPQWPRIFRVDYGHQEAETKFGKDPRTYEVLTKRFVGDENGVVKGLEVVRVCWEKDETGKFQFKEIEGSEEIIEADLVLLAMGFLGPEATIAEKLGVERDNRSNFKADYGRFSTSVDGVFAAGDCRRGQSLVVWAISEGRQAAAQVDSYLTNEDHGIDGN----QDEFVKRQQDLNKKHSKHTVMT 2194
BLAST of FC878300 vs. ExPASy Swiss-Prot
Match: GLT1_SCHPO (Putative glutamate synthase [NADPH] OS=Schizosaccharomyces pombe GN=SPAPB1E7.07 PE=2 SV=1) HSP 1 Score: 283.878 bits (725), Expect = 8.079e-76 Identity = 139/246 (56.50%), Postives = 168/246 (68.29%), Query Frame = 3 Query: 6 DAIVLAVGSTKPRDLPVPGRDLSGIHFAMEFLHSNTKSLLDSNLEDDSYISAXXXXXXXXXXXXXXXXXXXXSIRHGCSSIVNLELLPQPPQTRAPGNPWPQWPRVFRVDYGHQEVAAKFGKDPRSYEVLTKRFIGDENGVVKGLEIVRVHWEKDASGKFQFKEVEGSEEIIGADLVLLAMGFLGPEATVAEKLGLERDNRSNFKAEYGRFATSVDGVFAAGDCRRGQSLVVWAISEGRQAAAQVD 743 DA+VLA GST PRDLP+P RD GIHFAMEFLH NTKSLLDS L+D +YISA S+RHG S+ NLELLP PP+ RA NPWPQ+PRVFRVDYGH EV A +G+D R Y +LTK F DE+G VKG+ VR+ W K++ G++ KE+ SEE ADLV+LA+GFLGPE + ++RD RSN + TSV G++AAGDCRRGQSLVVW I EGRQ A ++D Sbjct: 1844 DAVVLASGSTVPRDLPIPNRDSKGIHFAMEFLHKNTKSLLDSELKDGNYISAKGKDVIVIGGGDTGNDCLGTSVRHGAKSVRNLELLPIPPRERAFDNPWPQYPRVFRVDYGHAEVQAHYGQDFREYSILTKSFEKDEDGNVKGINTVRIEWTKNSKGRWIMKEIRNSEEFFPADLVILALGFLGPEEQATAGMNVDRDARSNISTPTKSYETSVPGIYAAGDCRRGQSLVVWGIQEGRQCAREID 2089
BLAST of FC878300 vs. ExPASy Swiss-Prot
Match: GLT1_YEAST (Glutamate synthase [NADH] OS=Saccharomyces cerevisiae GN=GLT1 PE=1 SV=2) HSP 1 Score: 234.572 bits (597), Expect = 5.621e-61 Identity = 121/252 (48.02%), Postives = 158/252 (62.70%), Query Frame = 3 Query: 3 NDAIVLAVGSTKPRDLPVPGRDLSGIHFAMEFLHSNTKSLLDSNLEDDSYISAXXXXXXXXXXXXXXXXXXXXSIRHGCSSIVNLELLPQPPQTRAPGNPWPQWPRVFRVDYGHQEVAAKFGKDPRSYEVLTKRFIGDENGVVKGLEIVRVHWEKDASGKFQFKEVEGSEEIIGADLVLLAMGFLGPEATVAEKLGLERDNRSNFKAEYGRFATSVDG--VFAAGDCRRGQSLVVWAISEGRQAAAQVDNYL 752 ++A+V A+GST PRDLP+ GR+L I FAM+ L SNTK+LL+ +LE S+RHG +S++N ELLP+PP RA NPWPQWPRV RVDYGH EV +G+DPR Y +L+K FIG++ G V + VRV W+K SG +Q E+ SEEI AD++LL+MGF+GPE +++ R A + S+DG FA GDCRRGQSL+VWAI EGR+ AA VD +L Sbjct: 1868 HNAVVYAIGSTIPRDLPIKGRELKNIDFAMQLLESNTKALLNKDLEIIRE-KIQGKKVIVVGGGDTGNDCLGTSVRHGAASVLNFELLPEPPVERAKDNPWPQWPRVMRVDYGHAEVKEHYGRDPREYCILSKEFIGNDEGEVTAIRTVRVEWKKSQSGVWQMVEIPNSEEIFEADIILLSMGFVGPELINGNDNEVKKTRRGTI-ATLDDSSYSIDGGKTFACGDCRRGQSLIVWAIQEGRKCAASVDKFL 2117
BLAST of FC878300 vs. ExPASy Swiss-Prot
Match: GLTB_BACSU (Glutamate synthase [NADPH] small chain OS=Bacillus subtilis GN=gltB PE=2 SV=2) HSP 1 Score: 208.379 bits (529), Expect = 4.314e-53 Identity = 102/253 (40.32%), Postives = 152/253 (60.08%), Query Frame = 3 Query: 6 DAIVLAVGSTKPRDLPVPGRDLSGIHFAMEFLHSNTKSLLDSNLEDDSYISAXXXXXXXXXXXXXXXXXXXXSIRHGCSSIVNLELLPQPPQTRAPGNPWPQWPRVFRVDYGHQEVAAKFGKDPRSYEVLTKRFIGDENGVVKGLEIVRVHWEKDASGKFQFKEVEGSEEIIGADLVLLAMGFLGPEATVAEKLGLERDNRSNFKAEYGRFATSVDGVFAAGDCRRGQSLVVWAISEGRQAAAQVDNYLSSSS 764 DA++L G+ K RDL + GRD G+H+AM++L TKS LDSN +D +I A ++R S+ P+ P R N WP+ P VF ++Y ++E AKFG+DPR Y + T + + D+NG +K L +++ K+ GK++F+E+ G+E++ A LV +A+GF G E + ++ G+ N + A YG + T++DGVFAAGD RRGQSL+VWAI+EGR+ A +VD YL SS Sbjct: 239 DAVILCTGAQKQRDLLIEGRDSKGVHYAMDYLTLATKSYLDSNFKDKQFIDAKGKDVIVIGGGDTGADCVATALRQKAKSVHQFGKHPKLPPARTNDNMWPEQPHVFTLEYAYEEAEAKFGRDPREYSIQTTKMVADKNGKLKELHTIQMEKVKNEHGKYEFRELPGTEKVWPAQLVFIAIGFEGTEQPLLKQFGVNSVN-NKISAAYGDYQTNIDGVFAAGDARRGQSLIVWAINEGREVAREVDRYLMGSS 490
BLAST of FC878300 vs. ExPASy Swiss-Prot
Match: GLTD_AZOBR (Glutamate synthase [NADPH] small chain OS=Azospirillum brasilense GN=gltD PE=1 SV=3) HSP 1 Score: 87.0409 bits (214), Expect = 1.449e-16 Identity = 74/259 (28.57%), Postives = 125/259 (48.26%), Query Frame = 3 Query: 9 AIVLAVGSTKPRDLPVPGRDLSGIHFAMEFLHSNTKSLLDSNLE--DDSYISAXXXXXXXXXXXXXXXXXXXXSIRHGCSSIVNLELLPQPPQTRAPGNPWPQWPRVFRVDYGH-QEVAAKFGKDPRSYEVLTKRFIGDENGVVKGLEIVRVHWE-KDASGKFQFKEVEGSEEIIGADLVLLAMGFLGPEATVA-EKLGLERDNRSNFKAEYGRFATSVDGVFAAGDCRRGQSLVVWAISEGRQAAAQVDNYLSSSSDS 770 A+++A G K RD+ PG L I A+++L ++ K L +E ++ ++A +IR G +S+ + L + + PG+ + + H +E +F ++ + F GD VV G+ VR+H DA+G+ + +EGSE + ADLV+ A+GF + A ++ L+ ++ T++DGVFAAGD RG SLVVWAI +GR AA + Y + +++ Sbjct: 236 AVLVATGVYKARDIKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGGDTAMDCVRTAIRQGATSV---KCLYRRDRKNMPGS---------QREVAHAEEEGVEF-----IWQAAPEGFTGDT--VVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAFDEPELKVTRWGTLLVDHRTKMTNMDGVFAAGDIVRGASLVVWAIRDGRDAAEGIHAYAKAKAEA 475
BLAST of FC878300 vs. ExPASy Swiss-Prot
Match: GLTD_ECOLI (Glutamate synthase [NADPH] small chain OS=Escherichia coli (strain K12) GN=gltD PE=1 SV=3) HSP 1 Score: 85.8853 bits (211), Expect = 3.229e-16 Identity = 75/254 (29.53%), Postives = 112/254 (44.09%), Query Frame = 3 Query: 6 DAIVLAVGSTKPRDLPVPGRDLSGIHFAMEFLHSNTKSLLD-SNLEDDSYISAXXXXXXXXXXXXXXXXXXXXSIRHGCSSIVNLELLPQPPQTRAPGNPWPQWPRVFRVDYGHQEVAAKFGKDPRSYEVLTKRFIGDENGVVKGLEIVRVHW-EKDASGKFQFKEVEGSEEIIGADLVLLAMGFLGPEATVAEKLGLERDNRSNFKAEYGR---FATSVDGVFAAGDCRRGQSLVVWAISEGRQAAAQVDNYL 752 DA+ L VG+ + + D G++ A+ FL +NTK L+ D+ ++S S+R G + + + PG+ R + + V KF P EV + NG V G+++VR E DA G+ + + V GSE I+ AD V++A GF K +E D++ A G F TS +FA GD RG LVV AI+EGR+AA + N+L Sbjct: 233 DAVFLGVGTYQSMRGGLENEDADGVYAALPFLIANTKQLMGFGETRDEPFVSMEGKRVVVLGGGDTAMDCVRTSVRQGAKHVT---CAYRRDEENMPGS------RREVKNAREEGVEFKFNVQPLGIEV-------NGNGKVSGVKMVRTEMGEPDAKGRRRAEIVAGSEHIVPADAVIMAFGFRPHNMEWLAKHSVELDSQGRIIAPEGSDNAFQTSNPKIFAGGDIVRGSDLVVTAIAEGRKAADGIMNWL 470
BLAST of FC878300 vs. ExPASy Swiss-Prot
Match: GLTD_RHOSH (Putative glutamate synthase [NADPH] small chain OS=Rhodobacter sphaeroides GN=gltD PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 4.663e-15 Identity = 73/256 (28.52%), Postives = 121/256 (47.27%), Query Frame = 3 Query: 3 NDAIVLAVGSTKPRDLPVPGRDLSGIHFAMEFLHSNTKSLLDSNLEDDSYISAXXXXXXXXXXXXXXXXXXXXSIRHGCSSIVNLELLPQPPQTRAPGNPWPQWPRVFRVDYGHQEVAAKFG--KDPRSYEVLTKRFIGDENGVVKGLEIVRVHW-EKDASGKFQFKEVEGSEEIIGADLVLLAMGFLGPE--ATVAEKLGLERDNRSNFKAEYGRFATSVDGVFAAGDCRRGQSLVVWAISEGRQAAAQVDNYLS 755 +DA+++A G K RDL PG +G+ A+ +L ++ + ++DD + A +IR G +S+ + L + + PG+ R +E +F PR + GD V+G+ + ++ E DA+G+ + +EG++ + ADL ++A+GF PE T+ L KA++ ATS+ GV+A GD RG SLVVWAI +GR AA + +YL+ Sbjct: 172 HDAVLIATGVYKQRDLAAPGVGSAGVVQALSYLTASNRRSFGDEVDDDG-LDASGKRVVVIGGGDTAMDCVRTAIRQGATSV---KCLYRRDRANMPGSQ--------REVANAEEEGVEFVWLSAPRGF------IAGD---AVEGVIVQKMRLGEPDATGRQMPEIIEGADYVEPADLAIMALGF-EPEDLPTLWGVPDLTVTRWGTIKADFRTHATSLPGVYAVGDIVRGASLVVWAIRDGRDAAQSILDYLA 405
BLAST of FC878300 vs. ExPASy Swiss-Prot
Match: AEGA_ECOLI (Protein aegA OS=Escherichia coli (strain K12) GN=aegA PE=3 SV=2) HSP 1 Score: 77.7962 bits (190), Expect = 8.794e-14 Identity = 71/259 (27.41%), Postives = 115/259 (44.40%), Query Frame = 3 Query: 6 DAIVLAVGSTKPRDLPVPGRDLSGIHFAMEFLHSNTKSLLD-SNLEDDSYISAXXXXXXXXXXXXXXXXXXXXSIRHGCSSIVNLELLPQPPQTRAPGNPWPQWPRVFRVDYGHQEVAA-KFGKDPRSYEVLTKRFIGDENGVVKGLEIVRVHW-EKDASGKFQFKEVEGSEEIIGADLVLLAMGFLGPEATVAEKLGLERDNRSNFKAEYG---RFATSVDGVFAAGDCRRGQSLVVWAISEGRQAAAQVDNYLSSSS 764 DA+ + VG+ + +P D G++ A+ FL +NTK ++ L ++ +I+ ++RHG S N+ + + PG+ V +E A +F P + E+ +E G V G+ +R E DA G+ + VEGSE ++ AD V++A GF E G+ D A+ R+ T+ +FA GD RG LVV A++EGR AA + ++L S Sbjct: 414 DAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGAS---NVTCAYRRDEANMPGSKK-------EVKNAREEGANFEFNVQPVALEL-------NEQGHVCGIRFLRTRLGEPDAQGRRRPVPVEGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQTTNPKIFAGGDAVRGADLVVTAMAEGRHAAQGIIDWLGVKS 655 The following BLAST results are available for this feature:
BLAST of FC878300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878300 ID=FC878300; Name=FC878300; organism=Citrus clementina; type=EST; length=865bpback to top |