FC878300

Overview
NameFC878300
Unique NameFC878300
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length865
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13114 contig Ccv1_Contig13114:913..1777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878300 vs. ExPASy Swiss-Prot
Match: GLSN_MEDSA (Glutamate synthase [NADH], amyloplastic OS=Medicago sativa PE=1 SV=1)

HSP 1 Score: 437.573 bits (1124), Expect = 4.372e-122
Identity = 216/286 (75.52%), Postives = 241/286 (84.27%), Query Frame = 3
Query:    3 NDAIVLAVGSTKPRDLPVPGRDLSGIHFAMEFLHSNTKSLLDSNLEDDSYISAXXXXXXXXXXXXXXXXXXXXSIRHGCSSIVNLELLPQPPQTRAPGNPWPQWPRVFRVDYGHQEVAAKFGKDPRSYEVLTKRFIGDENGVVKGLEIVRVHWEKDASGKFQFKEVEGSEEIIGADLVLLAMGFLGPEATVAEKLGLERDNRSNFKAEYGRFATSVDGVFAAGDCRRGQSLVVWAISEGRQAAAQVDNYLSSSSDSQEEDFVKMQQGFTKRPQDLNKK-QQHIVMT 857
            NDAIVLAVG+TKPRDLPVPGR+LSG+HFAMEFLH+NTKSLLDSNL+D +YISA                    SIRHGC+++VNLELLPQPP TRAPGNPWPQWPR+FRVDYGHQE   KFGKDPR+YEVLTKRF+GDENGVVKGLE+VRV WEKD +GKFQFKE+EGSEEII ADLVLLAMGFLGPEAT+AEKLG+ERDNRSNFKA+YGRF+TSVDGVFAAGDCRRGQSLVVWAISEGRQAAAQVD+YL++     + +    Q  F KR QDLNKK  +H VMT
Sbjct: 1913 NDAIVLAVGATKPRDLPVPGRELSGVHFAMEFLHANTKSLLDSNLQDGNYISAKGKKVVVIGGGDTGTDCIGTSIRHGCTAVVNLELLPQPPPTRAPGNPWPQWPRIFRVDYGHQEAETKFGKDPRTYEVLTKRFVGDENGVVKGLEVVRVCWEKDETGKFQFKEIEGSEEIIEADLVLLAMGFLGPEATIAEKLGVERDNRSNFKADYGRFSTSVDGVFAAGDCRRGQSLVVWAISEGRQAAAQVDSYLTNEDHGIDGN----QDEFVKRQQDLNKKHSKHTVMT 2194          
BLAST of FC878300 vs. ExPASy Swiss-Prot
Match: GLT1_SCHPO (Putative glutamate synthase [NADPH] OS=Schizosaccharomyces pombe GN=SPAPB1E7.07 PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 8.079e-76
Identity = 139/246 (56.50%), Postives = 168/246 (68.29%), Query Frame = 3
Query:    6 DAIVLAVGSTKPRDLPVPGRDLSGIHFAMEFLHSNTKSLLDSNLEDDSYISAXXXXXXXXXXXXXXXXXXXXSIRHGCSSIVNLELLPQPPQTRAPGNPWPQWPRVFRVDYGHQEVAAKFGKDPRSYEVLTKRFIGDENGVVKGLEIVRVHWEKDASGKFQFKEVEGSEEIIGADLVLLAMGFLGPEATVAEKLGLERDNRSNFKAEYGRFATSVDGVFAAGDCRRGQSLVVWAISEGRQAAAQVD 743
            DA+VLA GST PRDLP+P RD  GIHFAMEFLH NTKSLLDS L+D +YISA                    S+RHG  S+ NLELLP PP+ RA  NPWPQ+PRVFRVDYGH EV A +G+D R Y +LTK F  DE+G VKG+  VR+ W K++ G++  KE+  SEE   ADLV+LA+GFLGPE      + ++RD RSN       + TSV G++AAGDCRRGQSLVVW I EGRQ A ++D
Sbjct: 1844 DAVVLASGSTVPRDLPIPNRDSKGIHFAMEFLHKNTKSLLDSELKDGNYISAKGKDVIVIGGGDTGNDCLGTSVRHGAKSVRNLELLPIPPRERAFDNPWPQYPRVFRVDYGHAEVQAHYGQDFREYSILTKSFEKDEDGNVKGINTVRIEWTKNSKGRWIMKEIRNSEEFFPADLVILALGFLGPEEQATAGMNVDRDARSNISTPTKSYETSVPGIYAAGDCRRGQSLVVWGIQEGRQCAREID 2089          
BLAST of FC878300 vs. ExPASy Swiss-Prot
Match: GLT1_YEAST (Glutamate synthase [NADH] OS=Saccharomyces cerevisiae GN=GLT1 PE=1 SV=2)

HSP 1 Score: 234.572 bits (597), Expect = 5.621e-61
Identity = 121/252 (48.02%), Postives = 158/252 (62.70%), Query Frame = 3
Query:    3 NDAIVLAVGSTKPRDLPVPGRDLSGIHFAMEFLHSNTKSLLDSNLEDDSYISAXXXXXXXXXXXXXXXXXXXXSIRHGCSSIVNLELLPQPPQTRAPGNPWPQWPRVFRVDYGHQEVAAKFGKDPRSYEVLTKRFIGDENGVVKGLEIVRVHWEKDASGKFQFKEVEGSEEIIGADLVLLAMGFLGPEATVAEKLGLERDNRSNFKAEYGRFATSVDG--VFAAGDCRRGQSLVVWAISEGRQAAAQVDNYL 752
            ++A+V A+GST PRDLP+ GR+L  I FAM+ L SNTK+LL+ +LE                           S+RHG +S++N ELLP+PP  RA  NPWPQWPRV RVDYGH EV   +G+DPR Y +L+K FIG++ G V  +  VRV W+K  SG +Q  E+  SEEI  AD++LL+MGF+GPE        +++  R    A     + S+DG   FA GDCRRGQSL+VWAI EGR+ AA VD +L
Sbjct: 1868 HNAVVYAIGSTIPRDLPIKGRELKNIDFAMQLLESNTKALLNKDLEIIRE-KIQGKKVIVVGGGDTGNDCLGTSVRHGAASVLNFELLPEPPVERAKDNPWPQWPRVMRVDYGHAEVKEHYGRDPREYCILSKEFIGNDEGEVTAIRTVRVEWKKSQSGVWQMVEIPNSEEIFEADIILLSMGFVGPELINGNDNEVKKTRRGTI-ATLDDSSYSIDGGKTFACGDCRRGQSLIVWAIQEGRKCAASVDKFL 2117          
BLAST of FC878300 vs. ExPASy Swiss-Prot
Match: GLTB_BACSU (Glutamate synthase [NADPH] small chain OS=Bacillus subtilis GN=gltB PE=2 SV=2)

HSP 1 Score: 208.379 bits (529), Expect = 4.314e-53
Identity = 102/253 (40.32%), Postives = 152/253 (60.08%), Query Frame = 3
Query:    6 DAIVLAVGSTKPRDLPVPGRDLSGIHFAMEFLHSNTKSLLDSNLEDDSYISAXXXXXXXXXXXXXXXXXXXXSIRHGCSSIVNLELLPQPPQTRAPGNPWPQWPRVFRVDYGHQEVAAKFGKDPRSYEVLTKRFIGDENGVVKGLEIVRVHWEKDASGKFQFKEVEGSEEIIGADLVLLAMGFLGPEATVAEKLGLERDNRSNFKAEYGRFATSVDGVFAAGDCRRGQSLVVWAISEGRQAAAQVDNYLSSSS 764
            DA++L  G+ K RDL + GRD  G+H+AM++L   TKS LDSN +D  +I A                    ++R    S+      P+ P  R   N WP+ P VF ++Y ++E  AKFG+DPR Y + T + + D+NG +K L  +++   K+  GK++F+E+ G+E++  A LV +A+GF G E  + ++ G+   N +   A YG + T++DGVFAAGD RRGQSL+VWAI+EGR+ A +VD YL  SS
Sbjct:  239 DAVILCTGAQKQRDLLIEGRDSKGVHYAMDYLTLATKSYLDSNFKDKQFIDAKGKDVIVIGGGDTGADCVATALRQKAKSVHQFGKHPKLPPARTNDNMWPEQPHVFTLEYAYEEAEAKFGRDPREYSIQTTKMVADKNGKLKELHTIQMEKVKNEHGKYEFRELPGTEKVWPAQLVFIAIGFEGTEQPLLKQFGVNSVN-NKISAAYGDYQTNIDGVFAAGDARRGQSLIVWAINEGREVAREVDRYLMGSS 490          
BLAST of FC878300 vs. ExPASy Swiss-Prot
Match: GLTD_AZOBR (Glutamate synthase [NADPH] small chain OS=Azospirillum brasilense GN=gltD PE=1 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 1.449e-16
Identity = 74/259 (28.57%), Postives = 125/259 (48.26%), Query Frame = 3
Query:    9 AIVLAVGSTKPRDLPVPGRDLSGIHFAMEFLHSNTKSLLDSNLE--DDSYISAXXXXXXXXXXXXXXXXXXXXSIRHGCSSIVNLELLPQPPQTRAPGNPWPQWPRVFRVDYGH-QEVAAKFGKDPRSYEVLTKRFIGDENGVVKGLEIVRVHWE-KDASGKFQFKEVEGSEEIIGADLVLLAMGFLGPEATVA-EKLGLERDNRSNFKAEYGRFATSVDGVFAAGDCRRGQSLVVWAISEGRQAAAQVDNYLSSSSDS 770
            A+++A G  K RD+  PG  L  I  A+++L ++ K  L   +E  ++  ++A                    +IR G +S+   + L +  +   PG+         + +  H +E   +F      ++   + F GD   VV G+  VR+H    DA+G+   + +EGSE  + ADLV+ A+GF   +   A ++  L+         ++    T++DGVFAAGD  RG SLVVWAI +GR AA  +  Y  + +++
Sbjct:  236 AVLVATGVYKARDIKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGGDTAMDCVRTAIRQGATSV---KCLYRRDRKNMPGS---------QREVAHAEEEGVEF-----IWQAAPEGFTGDT--VVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAFDEPELKVTRWGTLLVDHRTKMTNMDGVFAAGDIVRGASLVVWAIRDGRDAAEGIHAYAKAKAEA 475          
BLAST of FC878300 vs. ExPASy Swiss-Prot
Match: GLTD_ECOLI (Glutamate synthase [NADPH] small chain OS=Escherichia coli (strain K12) GN=gltD PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 3.229e-16
Identity = 75/254 (29.53%), Postives = 112/254 (44.09%), Query Frame = 3
Query:    6 DAIVLAVGSTKPRDLPVPGRDLSGIHFAMEFLHSNTKSLLD-SNLEDDSYISAXXXXXXXXXXXXXXXXXXXXSIRHGCSSIVNLELLPQPPQTRAPGNPWPQWPRVFRVDYGHQEVAAKFGKDPRSYEVLTKRFIGDENGVVKGLEIVRVHW-EKDASGKFQFKEVEGSEEIIGADLVLLAMGFLGPEATVAEKLGLERDNRSNFKAEYGR---FATSVDGVFAAGDCRRGQSLVVWAISEGRQAAAQVDNYL 752
            DA+ L VG+ +     +   D  G++ A+ FL +NTK L+      D+ ++S                     S+R G   +       +  +   PG+      R    +   + V  KF   P   EV       + NG V G+++VR    E DA G+ + + V GSE I+ AD V++A GF         K  +E D++    A  G    F TS   +FA GD  RG  LVV AI+EGR+AA  + N+L
Sbjct:  233 DAVFLGVGTYQSMRGGLENEDADGVYAALPFLIANTKQLMGFGETRDEPFVSMEGKRVVVLGGGDTAMDCVRTSVRQGAKHVT---CAYRRDEENMPGS------RREVKNAREEGVEFKFNVQPLGIEV-------NGNGKVSGVKMVRTEMGEPDAKGRRRAEIVAGSEHIVPADAVIMAFGFRPHNMEWLAKHSVELDSQGRIIAPEGSDNAFQTSNPKIFAGGDIVRGSDLVVTAIAEGRKAADGIMNWL 470          
BLAST of FC878300 vs. ExPASy Swiss-Prot
Match: GLTD_RHOSH (Putative glutamate synthase [NADPH] small chain OS=Rhodobacter sphaeroides GN=gltD PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.663e-15
Identity = 73/256 (28.52%), Postives = 121/256 (47.27%), Query Frame = 3
Query:    3 NDAIVLAVGSTKPRDLPVPGRDLSGIHFAMEFLHSNTKSLLDSNLEDDSYISAXXXXXXXXXXXXXXXXXXXXSIRHGCSSIVNLELLPQPPQTRAPGNPWPQWPRVFRVDYGHQEVAAKFG--KDPRSYEVLTKRFIGDENGVVKGLEIVRVHW-EKDASGKFQFKEVEGSEEIIGADLVLLAMGFLGPE--ATVAEKLGLERDNRSNFKAEYGRFATSVDGVFAAGDCRRGQSLVVWAISEGRQAAAQVDNYLS 755
            +DA+++A G  K RDL  PG   +G+  A+ +L ++ +      ++DD  + A                    +IR G +S+   + L +  +   PG+         R     +E   +F     PR +        GD    V+G+ + ++   E DA+G+   + +EG++ +  ADL ++A+GF  PE   T+     L        KA++   ATS+ GV+A GD  RG SLVVWAI +GR AA  + +YL+
Sbjct:  172 HDAVLIATGVYKQRDLAAPGVGSAGVVQALSYLTASNRRSFGDEVDDDG-LDASGKRVVVIGGGDTAMDCVRTAIRQGATSV---KCLYRRDRANMPGSQ--------REVANAEEEGVEFVWLSAPRGF------IAGD---AVEGVIVQKMRLGEPDATGRQMPEIIEGADYVEPADLAIMALGF-EPEDLPTLWGVPDLTVTRWGTIKADFRTHATSLPGVYAVGDIVRGASLVVWAIRDGRDAAQSILDYLA 405          
BLAST of FC878300 vs. ExPASy Swiss-Prot
Match: AEGA_ECOLI (Protein aegA OS=Escherichia coli (strain K12) GN=aegA PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 8.794e-14
Identity = 71/259 (27.41%), Postives = 115/259 (44.40%), Query Frame = 3
Query:    6 DAIVLAVGSTKPRDLPVPGRDLSGIHFAMEFLHSNTKSLLD-SNLEDDSYISAXXXXXXXXXXXXXXXXXXXXSIRHGCSSIVNLELLPQPPQTRAPGNPWPQWPRVFRVDYGHQEVAA-KFGKDPRSYEVLTKRFIGDENGVVKGLEIVRVHW-EKDASGKFQFKEVEGSEEIIGADLVLLAMGFLGPEATVAEKLGLERDNRSNFKAEYG---RFATSVDGVFAAGDCRRGQSLVVWAISEGRQAAAQVDNYLSSSS 764
            DA+ + VG+ +     +P  D  G++ A+ FL +NTK ++    L ++ +I+                     ++RHG S   N+    +  +   PG+          V    +E A  +F   P + E+       +E G V G+  +R    E DA G+ +   VEGSE ++ AD V++A GF        E  G+  D      A+     R+ T+   +FA GD  RG  LVV A++EGR AA  + ++L   S
Sbjct:  414 DAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGAS---NVTCAYRRDEANMPGSKK-------EVKNAREEGANFEFNVQPVALEL-------NEQGHVCGIRFLRTRLGEPDAQGRRRPVPVEGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQTTNPKIFAGGDAVRGADLVVTAMAEGRHAAQGIIDWLGVKS 655          
The following BLAST results are available for this feature:
BLAST of FC878300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
GLSN_MEDSA4.372e-12275.52Glutamate synthase [NADH], amyloplastic OS=Medicag... [more]
GLT1_SCHPO8.079e-7656.50Putative glutamate synthase [NADPH] OS=Schizosacch... [more]
GLT1_YEAST5.621e-6148.02Glutamate synthase [NADH] OS=Saccharomyces cerevis... [more]
GLTB_BACSU4.314e-5340.32Glutamate synthase [NADPH] small chain OS=Bacillus... [more]
GLTD_AZOBR1.449e-1628.57Glutamate synthase [NADPH] small chain OS=Azospiri... [more]
GLTD_ECOLI3.229e-1629.53Glutamate synthase [NADPH] small chain OS=Escheric... [more]
GLTD_RHOSH4.663e-1528.52Putative glutamate synthase [NADPH] small chain OS... [more]
AEGA_ECOLI8.794e-1427.41Protein aegA OS=Escherichia coli (strain K12) GN=a... [more]
back to top
Properties
Property NameValue
Genbank descriptionIC0AAA96BB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA96BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878300 ID=FC878300; Name=FC878300; organism=Citrus clementina; type=EST; length=865bp
AGAATGATGCTATTGTATTAGCAGTAGGCTCCACAAAACCTAGGGATCTT
CCTGTACCCGGAAGGGATTTGTCAGGCATCCATTTTGCAATGGAGTTCCT
TCATTCAAATACCAAAAGCTTGCTAGATAGCAATCTCGAGGATGATAGCT
ACATTTCTGCCAAGGGGAAGAAAGTAGTTGTTATTGGTGGAGGAGATACT
GGTACGGACTGTATAGGTACATCTATTCGTCATGGTTGTAGTAGCATCGT
AAATCTAGAGCTTCTCCCTCAGCCTCCACAAACTAGGGCTCCTGGCAACC
CTTGGCCTCAGTGGCCTCGTGTATTCCGTGTAGACTATGGACACCAGGAA
GTTGCTGCCAAATTCGGCAAAGACCCAAGGTCATATGAGGTATTGACAAA
GCGGTTTATTGGAGATGAAAATGGGGTTGTGAAAGGACTAGAGATAGTAC
GTGTGCATTGGGAGAAGGATGCTAGTGGGAAGTTTCAATTCAAAGAGGTT
GAAGGCTCTGAGGAAATAATTGGGGCCGACCTAGTCCTTCTGGCCATGGG
ATTCCTTGGCCCTGAAGCGACGGTGGCAGAAAAGTTGGGACTGGAGCGAG
ACAACCGATCAAATTTCAAGGCAGAATACGGTCGCTTTGCAACCAGTGTG
GATGGTGTCTTTGCAGCTGGGGATTGCCGGCGTGGCCAGTCTCTTGTGGT
ATGGGCAATCTCAGAGGGCCGCCAAGCTGCTGCTCAAGTGGACAATTACC
TCAGCTCTTCTAGCGACAGCCAAGAGGAGGATTTTGTCAAGATGCAACAA
GGCTTCACCAAAAGGCCGCAAGACTTGAACAAGAAGCAGCAACACATTGT
CATGACTTAGGTGAT
back to top