FC878302

Overview
NameFC878302
Unique NameFC878302
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length745
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878302_ssr229 microsatellite FC878302_ssr229:229..240. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10582 contig Ccv1_Contig10582:775..1520. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878302 vs. ExPASy Swiss-Prot
Match: SRF1_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsis thaliana GN=SRF1 PE=2 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 2.616e-45
Identity = 103/229 (44.98%), Postives = 133/229 (58.08%), Query Frame = 1
Query:   55 PTNQMEKDASVKPKEDHRSEMRRMGAIPHAQNEQERNKQRMSTIPRRDDHEIDMSSLDMMMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEGTAVKTSTKTAKPFTTARSFTIASLQQYTNSFSQEYLIGAGMLGSVYRAQLPDGKLLTVKKLDKRASSQHKDDEFLELVNNIDRIRHANIVGLKGYCA*HGQWLLI*EYCSNGTLHDMLHSDDELKNNLSWN 741
            P+N   KD   +PKE       R+G         ER+   + +  +++ HEIDM+   M +M                                 AE +  +T++K+  P T  + FT+ASLQQ+TNSFS E LIG GMLGSVYRA+LP GKL  V+KLDK++ +  ++ +FLELVNNIDRIRHANIV L G+C+ H Q LLI EYC NGTLHD+LH DD LK  LSWN
Sbjct:  375 PSNTFNKDKEARPKE-------RVGGASKLHGGAERS---VGSESKQESHEIDMNGNAMDLMHPSSIPPIKRVIAKATEP---------------AEASLKRTTSKSHGPLTAVKHFTVASLQQHTNSFSHENLIGTGMLGSVYRAELPGGKLFAVRKLDKKSPNHEEEGKFLELVNNIDRIRHANIVQLVGFCSEHSQRLLIHEYCRNGTLHDLLHIDDRLKIELSWN 578          
BLAST of FC878302 vs. ExPASy Swiss-Prot
Match: SRF3_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsis thaliana GN=SRF3 PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.298e-44
Identity = 89/130 (68.46%), Postives = 103/130 (79.23%), Query Frame = 1
Query:  355 VKTSTKTAKPFTTARSFTIASLQQYTNSFSQEYLIGAGMLGSVYRAQLPDGKLLTVKKLDKRASSQHKDDEFLELVNNIDRIRHANIVGLKGYCA*HGQWLLI*EYCSNGTLHDMLHSDDELKNNLSWNT 744
            VK ++    P T+ + ++IASLQQYT SF+QE LIG+GMLGSVYRA+LP+GKL  VKKLDKRAS Q +D EF+ELVNNID IRH+NIV L GYCA H Q LL+ EYCSNGTL D LHSDDE K  LSWNT
Sbjct:  457 VKKTSPKRLPLTSVKHYSIASLQQYTESFAQENLIGSGMLGSVYRARLPNGKLFAVKKLDKRASEQQQDHEFIELVNNIDMIRHSNIVELVGYCAEHDQRLLVYEYCSNGTLQDGLHSDDEFKKKLSWNT 586          
BLAST of FC878302 vs. ExPASy Swiss-Prot
Match: SRF8_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsis thaliana GN=SRF8 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.261e-31
Identity = 64/117 (54.70%), Postives = 84/117 (71.79%), Query Frame = 1
Query:  391 TARSFTIASLQQYTNSFSQEYLIGAGMLGSVYRAQLPDGKLLTVKKLDKRASSQHKDDEFLELVNNIDRIRHANIVGLKGYCA*HGQWLLI*EYCSNGTLHDMLHSDDELKNNLSWN 741
            TA  +T++SLQ  TNSFSQE +IG G LG VYRA+ P+GK++ +KK+D  A S  ++D FLE V+N+ R+RH NIV L GYC  HGQ LL+ EY  NG L D LH++D+   NL+WN
Sbjct:  379 TASQYTVSSLQVATNSFSQENIIGEGSLGRVYRAEFPNGKIMAIKKIDNAALSLQEEDNFLEAVSNMSRLRHPNIVPLAGYCTEHGQRLLVYEYVGNGNLDDTLHTNDDRSMNLTWN 495          
BLAST of FC878302 vs. ExPASy Swiss-Prot
Match: SUB_ARATH (Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.456e-28
Identity = 61/118 (51.69%), Postives = 81/118 (68.64%), Query Frame = 1
Query:  388 TTARSFTIASLQQYTNSFSQEYLIGAGMLGSVYRAQLPDGKLLTVKKLDKRASSQHKDDEFLELVNNIDRIRHANIVGLKGYCA*HGQWLLI*EYCSNGTLHDMLHSDDELKNNLSWN 741
            ++A  FTIASLQQYTN+FS+E +IG G +G+VYRA+L  GK L VKKL    +    D EFL LV+N+ +++  +I+ L GYC   GQ LL+ EYC NG+L D LH D +L   L+WN
Sbjct:  480 SSATVFTIASLQQYTNNFSEENIIGEGSIGNVYRAELRHGKFLAVKKLSNTINRTQSDGEFLNLVSNVLKLKRGHILELLGYCNEFGQRLLVYEYCPNGSLQDALHLDRKLHKKLTWN 597          
BLAST of FC878302 vs. ExPASy Swiss-Prot
Match: SRF6_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana GN=SRF6 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.546e-24
Identity = 58/131 (44.27%), Postives = 79/131 (60.31%), Query Frame = 1
Query:  352 AVKTSTKTAKPFTTARSFTIASLQQYTNSFSQEYLIGAGMLGSVYRAQLPDGKLLTVKKLDKRASSQHKDDEFLELVNNIDRIRHANIVGLKGYCA*HGQWLLI*EYCSNGTLHDMLHSDDELKNNLSWNT 744
            AVK ST      +  R +++A LQ  T SFS + L+G G  G VYRA+  DGK+L VKK+D  A      D+F+E+V+ I  + H N+  L GYCA HGQ L++ E+  NG+LHD LH  +E    L WN+
Sbjct:  389 AVKKSTVVVP--SNVRLYSVADLQIATGSFSVDNLLGEGTFGRVYRAEFDDGKVLAVKKIDSSALPHGMTDDFIEMVSKIANLDHPNVTKLVGYCAEHGQHLVVYEFHKNGSLHDFLHLSEEESKALVWNS 517          
BLAST of FC878302 vs. ExPASy Swiss-Prot
Match: SRF7_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsis thaliana GN=SRF7 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.264e-23
Identity = 53/118 (44.92%), Postives = 73/118 (61.86%), Query Frame = 1
Query:  388 TTARSFTIASLQQYTNSFSQEYLIGAGMLGSVYRAQLPDGKLLTVKKLDKRASSQHKDDEFLELVNNIDRIRHANIVGLKGYCA*HGQWLLI*EYCSNGTLHDMLHSDDELKNNLSWN 741
            +   ++T++ LQ  TNSFS + L+G G  G VYRAQ  DGK+L VKK+D  A      D+F E+V+ I  + H N+  L GYC+ HGQ L++ E+  NG+LHD LH  +E    L WN
Sbjct:  402 SNVNTYTVSDLQVATNSFSVDNLLGEGTFGRVYRAQFEDGKVLAVKKIDSSALPTDTADDFTEIVSKIAHLDHENVTKLDGYCSEHGQHLVVYEFHRNGSLHDFLHLAEEESKPLIWN 519          
BLAST of FC878302 vs. ExPASy Swiss-Prot
Match: SRF2_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 2 OS=Arabidopsis thaliana GN=SRF2 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.708e-20
Identity = 51/127 (40.16%), Postives = 82/127 (64.57%), Query Frame = 1
Query:  358 KTSTKTAKPFTTARSFTIASLQQYTNSFSQEYLIGAGMLGSVYRAQLPDGKLLTVKKLDKRASSQHKDDEFLELVNNIDRIRHANIVGLKGYCA*HGQWLLI*EYCSNGTLHDMLHSDDELKNNLSW 738
            K+ + T +  + A+ F+ A LQ  TN FS+E L+G G LGSVYRA+LPDG+   V+ +   + S H++++F E++    ++RH NIV L G+C  +G+ LL+ EY  + +L++ +H  DE+   LSW
Sbjct:  388 KSFSATCQYPSFAKLFSAAELQLATNCFSEENLLGEGPLGSVYRAKLPDGQFAVVRNIPMSSLSLHEEEQFTEVLQTASKLRHPNIVTLLGFCIENGEHLLVYEYVGHLSLYNAMH--DEVYKPLSW 512          
BLAST of FC878302 vs. ExPASy Swiss-Prot
Match: SRF5_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsis thaliana GN=SRF5 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.969e-20
Identity = 51/131 (38.93%), Postives = 72/131 (54.96%), Query Frame = 1
Query:  352 AVKTSTKTAKPFTTARSFTIASLQQYTNSFSQEYLIGAGMLGSVYRAQLPDGKLLTVKKLDKRASSQHKDDEFLELVNNIDRIRHANIVGLKGYCA*HGQWLLI*EYCSNGTLHDMLHSDDELKNNLSWNT 744
            A K + K      +A  F ++ LQ  T +FS   L+G G +G VYRA+  DG+ L VKK+D       K +    +V ++ +IRH NI  L GYC+  G  +L+ EY  NG+LH+ LH  D     L+WNT
Sbjct:  375 ANKLNAKRTTSTRSAVEFELSDLQSATANFSPGNLLGEGSIGRVYRAKYSDGRTLAVKKIDSTLFDSGKSEGITPIVMSLSKIRHQNIAELVGYCSEQGHNMLVYEYFRNGSLHEFLHLSDCFSKPLTWNT 505          
BLAST of FC878302 vs. ExPASy Swiss-Prot
Match: SRF4_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsis thaliana GN=SRF4 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.446e-19
Identity = 48/133 (36.09%), Postives = 77/133 (57.89%), Query Frame = 1
Query:  349 TAVKTSTKTAKPFTTA-RSFTIASLQQYTNSFSQEYLIGAGMLGSVYRAQLPDGKLLTVKKLDKRASSQHKDDEFLELVNNIDRIRHANIVGLKGYCA*HGQWLLI*EYCSNGTLHDMLHSDDELKNNLSWNT 744
            T  ++ST    P T   ++F++A LQ   + FS   L+G G +G VY+A+  DG+   VK++D     +   +EF  +V++I  I H N+  L GYC+  G+ +L+ EY ++G+LH  LH  D+    L+WNT
Sbjct:  384 TPDRSSTSQDSPDTRGVKAFSLADLQNTASCFSPNRLLGEGTIGRVYKAKFQDGRKFAVKEIDSSLLGKGNPEEFSHIVSSISSIHHKNMAELVGYCSEQGRNMLVYEYFTSGSLHRFLHLSDDFSKPLTWNT 516          
BLAST of FC878302 vs. ExPASy Swiss-Prot
Match: BRI1_SOLLC (Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.821e-15
Identity = 45/114 (39.47%), Postives = 64/114 (56.14%), Query Frame = 1
Query:  397 RSFTIASLQQYTNSFSQEYLIGAGMLGSVYRAQLPDGKLLTVKKLDKRASSQHKDDEFLELVNNIDRIRHANIVGLKGYCA*HGQWLLI*EYCSNGTLHDMLHSDDELKNNLSW 738
            R  T A L + TN F  + L+G+G  G VY+AQL DG ++ +KKL     S   D EF   +  I +I+H N+V L GYC    + LL+ EY   G+L D+LH   ++   L+W
Sbjct:  874 RKLTFADLLEATNGFHNDSLVGSGGFGDVYKAQLKDGSVVAIKKLIH--VSGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKYGSLEDVLHDRKKIGIKLNW 985          
The following BLAST results are available for this feature:
BLAST of FC878302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
SRF1_ARATH2.616e-4544.98Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsi... [more]
SRF3_ARATH1.298e-4468.46Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsi... [more]
SRF8_ARATH1.261e-3154.70Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsi... [more]
SUB_ARATH8.456e-2851.69Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB ... [more]
SRF6_ARATH2.546e-2444.27Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsi... [more]
SRF7_ARATH1.264e-2344.92Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsi... [more]
SRF2_ARATH1.708e-2040.16Protein STRUBBELIG-RECEPTOR FAMILY 2 OS=Arabidopsi... [more]
SRF5_ARATH4.969e-2038.93Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsi... [more]
SRF4_ARATH1.446e-1936.09Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsi... [more]
BRI1_SOLLC2.821e-1539.47Brassinosteroid LRR receptor kinase OS=Solanum lyc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA24CD05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA24CD05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878302 ID=FC878302; Name=FC878302; organism=Citrus clementina; type=EST; length=745bp
TGCATTTAGAGGCAACAACAGAGAGGAAGCCAGGGACATGGGACCTTGGC
CCTTCCAACCAATCAAATGGAGAAAGATGCATCTGTGAAGCCGAAGGAGG
ATCATCGATCAGAGATGAGAAGAATGGGAGCCATTCCACATGCACAGAAT
GAACAAGAGAGAAATAAACAAAGGATGAGCACAATACCTAGACGGGATGA
TCATGAGATAGACATGAGTTCACTAGATATGATGATGATGCCACCACCAC
CTCCTCCTCCCCCACCTCCACCTCCACCTCCTCCACCACCTCCTCCACCG
CCTGTTGTAGAGAAGGTCATTGTAAAGCCAATTGTGCCCGCTGAAGGAAC
TGCTGTGAAGACTTCCACTAAAACTGCAAAACCTTTCACAACTGCAAGGT
CTTTCACCATTGCATCCCTTCAACAATATACTAACAGCTTTTCTCAAGAA
TACCTTATAGGTGCTGGTATGCTGGGGAGTGTTTATAGGGCACAGCTTCC
TGATGGAAAGCTACTAACAGTCAAGAAACTGGACAAGAGGGCTTCAAGTC
AGCATAAGGATGATGAATTTCTTGAACTGGTGAACAATATTGATCGAATT
CGACATGCTAATATAGTCGGGCTCAAGGGTTACTGTGCATAGCATGGACA
ATGGCTTCTTATATAGGAGTATTGCAGTAACGGAACTCTGCATGATATGC
TACATTCAGATGATGAATTAAAAAATAATCTATCGTGGAACACCC
back to top