FC878359

Overview
NameFC878359
Unique NameFC878359
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length846
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3887 contig Ccv1_Contig3887:247..1092. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC878359 vs. ExPASy Swiss-Prot
Match: PLZ12_LUPPO (Protein PPLZ12 OS=Lupinus polyphyllus GN=PPLZ12 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 5.298e-48
Identity = 93/170 (54.71%), Postives = 122/170 (71.76%), Query Frame = 1 
Query:  160 LDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNXXXXXXXXXXXXXXXXXXXXXLQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQA 669
            ++LD  FEQK ++AK+V EELEK M  YGY I   L+VDI PD+ V+RAMN                     LQ+KRAE EAE+KYL G+G+ARQRQAI DGLR+++L FS  V GTS+K+VMD++++TQYFDT+K++G SSK  +VFIPHGPG V+DI  QIR GL+++
Sbjct:    1 MNLDDLFEQKGEVAKSVLEELEKVMGEYGYNIEHILMVDIIPDDSVRRAMNEINAAQRMQLASLYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGTSAKEVMDLIMITQYFDTIKDLGNSSKNTTVFIPHGPGHVRDIGEQIRNGLMES 170
The following BLAST results are available for this feature:
BLAST of FC878359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PLZ12_LUPPO5.298e-4854.71Protein PPLZ12 OS=Lupinus polyphyllus GN=PPLZ12 PE... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA65DC03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA65DC03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878359 ID=FC878359; Name=FC878359; organism=Citrus clementina; type=EST; length=846bp
TGAACAAAAACCAAGGACAATGTGTTTGTTAATGTGGTTGCTTCCGTTCA
ATACCGAGCCTTGGCAGAGAAGGCTTCAGATGCCTTTTATAAGCTCAGCA
ATACTAGATCGCAGATCCAAGCGTATGTCTTTGATGTTATTAGGGCAAGT
GTACCAAAGCTGGACCTGGATGCAACCTTTGAGCAGAAGAACGACATAGC
CAAAGCTGTGGAAGAGGAACTCGAAAAGGCCATGTCTCATTATGGTTATG
AGATAGTTCAGACTCTCATCGTAGATATTGAACCAGATGAACATGTGAAG
AGAGCAATGAATGAGATCAATGCAGCGGCCAGATTGAGGCTGGCTGCAAA
TGAGAAAGCGGAAGCAGAGAAAATATTGCAGATCAAGCGTGCTGAAGGAG
AAGCAGAATCAAAGTATTTGGCAGGCCTTGGTATTGCACGTCAGCGTCAG
GCCATTGTTGATGGCCTGAGGGATAGCGTGCTAGCCTTCTCTGAGAATGT
ACCTGGAACATCTTCAAAGGATGTCATGGACATGGTTCTGGTCACCCAGT
ATTTTGATACCATGAAGGAAATTGGTGCCTCCTCAAAGACTAACTCTGTG
TTCATCCCCCATGGACCTGGTGCTGTCAAAGACATTGCGTCGCAGATCAG
GGAAGGTCTCCTTCAGGCCAATGCTACCATGTAGTGAGTTTGTGCCACCT
CAAAGTCAAAACTCTGTTTCATCCCACATGGAGCGGGGGCTAATCTTCCA
GTTTGGATATGTTTTTATTTAGCTTGGAGTTGTGAAGAAGTTTCGTAATT
GCCTGTAGTACCATCTAGCATATTATGGGAAAGAAGTTTCTGTCAT
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