FC878364

Overview
NameFC878364
Unique NameFC878364
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length850
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2801 contig Ccv1_Contig2801:56..905. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878364 vs. ExPASy Swiss-Prot
Match: RAP1_ARATH (Transcription factor MYC2 OS=Arabidopsis thaliana GN=RAP1 PE=1 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 5.830e-63
Identity = 136/260 (52.31%), Postives = 168/260 (64.62%), Query Frame = 3
Query:   87 MTDYRLPSTMNLWT-DDNGSVMEAFMSS-DLTGIWPPSQSSASTADPMKTHIXXXXXXXXXXXXFFNQETLQQRLQQLIEGSREGWTYAIFWQSSCDYSGSSMLGWGDXXXXXXXXXXXXXXIKTS----SAAEQEHRKKVLRELNSLISGSTSSPXXXXXXXXXXXXXWFFLISMTQSFYVTXXXXXXXLPGQAYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPSANGVVELRSTEVIIQNSDLMNXVRFL 848
            MTDYRL  TMNLWT DDN S+MEAFMSS D++ +WPP+ ++ +TA    T               FNQETLQQRLQ LIEG+ EGWTYAIFWQ S D+SG+S+LGWGD                +S    + A+QE+RKKVLRELNSLISG  + P             WFFL+SMTQSF          L G+A+   + VWVSG+++L+ SGC+RA+QG VFG+ T+ CIPSANGVVE+ STE I Q+SDL+N VR L
Sbjct:    1 MTDYRLQPTMNLWTTDDNASMMEAFMSSSDISTLWPPASTTTTTAT---TETTPTPAMEIPAQAGFNQETLQQRLQALIEGTHEGWTYAIFWQPSYDFSGASVLGWGDGYYKGEEDKANPRRRSSSPPFSTPADQEYRKKVLRELNSLISGGVA-PSDDAVDEEVTDTEWFFLVSMTQSF-----ACGAGLAGKAFATGNAVWVSGSDQLSGSGCERAKQGGVFGMHTIACIPSANGVVEVGSTEPIRQSSDLINKVRIL 251          
BLAST of FC878364 vs. ExPASy Swiss-Prot
Match: BH004_ARATH (Transcription factor MYC4 OS=Arabidopsis thaliana GN=BHLH4 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.394e-48
Identity = 116/265 (43.77%), Postives = 150/265 (56.60%), Query Frame = 3
Query:   87 MTDYRL----PSTMNLW-TDDNGSVMEAFMS--SDLTGIWPPSQSSASTADPMKTHIXXXXXXXXXXXXFFNQETLQQRLQQLIEGSREGWTYAIFWQSSCDYSGSS-------MLGWGDXXXXXXXXXXXXXXIKTSSAAEQEHRKKVLRELNSLISGSTSSPXXXXXXXXXXXXXWFFLISMTQSFYVTXXXXXXXLPGQAYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPSANGVVELRSTEVIIQNSDLMNXV 839
            +TDY L      T NLW TDD+ SVMEAF+   SD + ++PP         P    +              N++ LQQRLQ LIEG+ E WTYA+FWQSS  ++G         +LGWGD                 +SAAEQEHRK+V+RELNSLISG                  WFFL+SMTQSF          LPGQA+  +  +W+SG+  LA S C+RARQGQ++GLQT+VC+ + NGVVEL S+E+I Q+SDL++ V
Sbjct:    8 VTDYHLNQSKTDTTNLWSTDDDASVMEAFIGGGSDHSSLFPP------LPPPPLPQV--------------NEDNLQQRLQALIEGANENWTYAVFWQSSHGFAGEDNNNNNTVLLGWGDGYYKGEEEKSRKKKSNPASAAEQEHRKRVIRELNSLISGGVGG-GDEAGDEEVTDTEWFFLVSMTQSFV-----KGTGLPGQAFSNSDTIWLSGSNALAGSSCERARQGQIYGLQTMVCVATENGVVELGSSEIIHQSSDLVDKV 246          
BLAST of FC878364 vs. ExPASy Swiss-Prot
Match: ATR2_ARATH (Transcription factor ATR2 OS=Arabidopsis thaliana GN=ATR2 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.816e-41
Identity = 94/196 (47.96%), Postives = 121/196 (61.73%), Query Frame = 3
Query:  276 FNQETLQQRLQQLIEGSREGWTYAIFWQSSCDYSGSS-----MLGWGDXXXXXXXXXXXXXXIKTSSAAEQEHRKKVLRELNSLISGSTSSPXXXXXXXXXXXXXWFFLISMTQSFYVTXXXXXXXLPGQAYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPSANGVVELRSTEVIIQNSDLMNXVRFL 848
            FN++TLQQRLQ LIE + E WTYAIFWQ S D+  S+     +LGWGD                 ++ AEQEHRK+V+RELNSLISG                  WFFL+SMTQSF          LPG+++  +  +W+SG+  L  SGC+RA QGQ++GL+T+VCI + NGVVEL S+EVI Q+SDLM+ V  L
Sbjct:   47 FNEDTLQQRLQALIESAGENWTYAIFWQISHDFDSSTGDNTVILGWGDGYYKGEEDKEKKK--NNTNTAEQEHRKRVIRELNSLISGGIGVSDESNDEEVTDTE-WFFLVSMTQSFV-----NGVGLPGESFLNSRVIWLSGSGALTGSGCERAGQGQIYGLKTMVCIATQNGVVELGSSEVISQSSDLMHKVNNL 234          
BLAST of FC878364 vs. ExPASy Swiss-Prot
Match: BH028_ARATH (Transcription factor bHLH28 OS=Arabidopsis thaliana GN=BHLH28 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.287e-33
Identity = 93/251 (37.05%), Postives = 126/251 (50.20%), Query Frame = 3
Query:  126 TDDNGSVMEAFMSSDLTGIWPPSQSSASTADPMKTHIXXXXXXXXXXXXFFNQETLQQRLQQLIEGSREGWTYAIFWQSSCD-YSGSSMLGWGDXXXXXXXXXXXXXXIKT-----SSAAEQEHRKKVLRELNSLISGST----SSPXXXXXXXXXXXXXWFFLISMTQSFYVTXXXXXXXLPGQAYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPSANGVVELRSTEVIIQNSDLMNXVRFL 848
            TDDN  ++EA ++SD +    P+  S  T                         TL +RL  ++ G+ E W+YAIFW+ S D +SG ++L WGD              ++      SS  E+E R  V+RELN +ISG                      WFFL+SMT SF          L G+A+   +PV V+G++ +  SGCDRA+QG   GLQT++CIPS NGV+EL STE I  NSDL N +RFL
Sbjct:    4 TDDNLLMIEALLTSDPSPPLLPANLSLET-------------------------TLPKRLHAVLNGTHEPWSYAIFWKPSYDDFSGEAVLKWGDGVYTGGNEEKTRGRLRRKKTILSSPEEKERRSNVIRELNLMISGEAFPVVEDDVSDDDDVEVTDMEWFFLVSMTWSF-----GNGSGLAGKAFASYNPVLVTGSDLIYGSGCDRAKQGGDVGLQTILCIPSHNGVLELASTEEIRPNSDLFNRIRFL 224          
BLAST of FC878364 vs. ExPASy Swiss-Prot
Match: BH013_ARATH (Transcription factor bHLH13 OS=Arabidopsis thaliana GN=BHLH13 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.246e-14
Identity = 59/198 (29.80%), Postives = 86/198 (43.43%), Query Frame = 3
Query:  279 NQETLQQRLQQLIE---GSREGWTYAIFWQSSCDYSGSSMLGWGDXXXXXXXXXXXXXXIKTSSAAEQEH-----RKKVLRELNSLISGSTSSPXXXXXXXXXXXXXWFFLISMTQSFYVTXXXXXXXLPGQAYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPSANGVVELRSTEVIIQNSDLMNXVRFL 848
            + E LQ +L  L+E    S   W YAIFWQ S   +G  +L WGD              ++  S   +E      RK+VL++L+ L  GS                  F L SM  SF           PG+ +    PVW+S      +  C R+   +  G+QT+V +P+  GVVEL ST  + ++ D +  +R L
Sbjct:   44 SDENLQNKLSDLVERPNASNFSWNYAIFWQISRSKAGDLVLCWGDGYCREPKEGEKSEIVRILSMGREEETHQTMRKRVLQKLHDLFGGSEEE-NCALGLDRVTDTEMFLLSSMYFSF-----PRGEGGPGKCFASAKPVWLSDVVNSGSDYCVRSFLAKSAGIQTVVLVPTDLGVVELGSTSCLPESEDSILSIRSL 235          
BLAST of FC878364 vs. ExPASy Swiss-Prot
Match: AIB_ARATH (Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Arabidopsis thaliana GN=AIB PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 5.533e-13
Identity = 57/199 (28.64%), Postives = 88/199 (44.22%), Query Frame = 3
Query:  285 ETLQQRLQQLIEGSRE---GWTYAIFWQSSCDYSGSSMLGWGDXXXXXXXXXXXXXXIKT----SSAAEQEH----RKKVLRELNSLISGSTSSPXXXXXXXXXXXXXWFFLISMTQSFYVTXXXXXXXLPGQAYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPSANGVVELRSTEVIIQNSDLMNXVRFL 848
            +TL ++L  L++        W YAIFWQ +   SG  +LGWGD              +++    +  AE+E     RK+VL++L+ L  GS                  FFL SM   F           PG+ Y     VW+S A    +  C R+   +  G++T+V +P+  GV+EL S   + +N  L+  V+ L
Sbjct:   46 DTLNKKLSSLVDWPNSENFSWNYAIFWQQTMSRSGQQVLGWGDGCCREPNEEEESKVVRSYNFNNMGAEEETWQDMRKRVLQKLHRLFGGSDEDNYALSLEKVTATEI-FFLASMYFFF-----NHGEGGPGRCYSSGKHVWLSDAVNSESDYCFRSFMAKSAGIRTIVMVPTDAGVLELGSVWSLPENIGLVKSVQAL 238          
The following BLAST results are available for this feature:
BLAST of FC878364 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
RAP1_ARATH5.830e-6352.31Transcription factor MYC2 OS=Arabidopsis thaliana ... [more]
BH004_ARATH1.394e-4843.77Transcription factor MYC4 OS=Arabidopsis thaliana ... [more]
ATR2_ARATH2.816e-4147.96Transcription factor ATR2 OS=Arabidopsis thaliana ... [more]
BH028_ARATH6.287e-3337.05Transcription factor bHLH28 OS=Arabidopsis thalian... [more]
BH013_ARATH2.246e-1429.80Transcription factor bHLH13 OS=Arabidopsis thalian... [more]
AIB_ARATH5.533e-1328.64Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA65DC04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA65DC04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878364 ID=FC878364; Name=FC878364; organism=Citrus clementina; type=EST; length=850bp
CTTTCTCATCTCCTTAGCTTTACTTTCCTTCTCCAGCTTGTAATCCCGCC
CCCCGCACACAGATCATTCGGTAGTAGGTCAATGTTATGACGGACTACCG
GTTACCTTCAACGATGAATCTATGGACTGACGATAACGGCTCTGTAATGG
AAGCTTTCATGAGCTCTGATTTGACCGGTATTTGGCCACCTTCGCAGTCT
TCTGCATCTACAGCCGACCCCATGAAGACTCACATCTCTTCTTCATCCCA
ACAACAGCAACAACAGCAACAATTCTTCAATCAAGAAACACTCCAGCAAC
GTCTTCAGCAATTGATTGAAGGCTCTCGTGAGGGCTGGACCTACGCCATA
TTCTGGCAATCCTCGTGCGATTACTCCGGCTCCTCTATGTTAGGATGGGG
CGATGGGTATTACAAAGGAGAAGGAGAGAAAGGAAAATCATCAAAAATTA
AAACGTCGTCAGCTGCGGAGCAGGAGCATCGTAAGAAGGTACTGCGCGAA
CTTAACTCGTTGATTTCTGGATCAACGTCTTCGCCGACTGATGATGCTGT
TGATGAAGAGGTTACAGATACAGAATGGTTCTTTTTGATTTCGATGACTC
AGTCTTTTTACGTGACCGGAGGCGGTGGCGGTGGCGGGCTGCCGGGTCAA
GCGTATTTTGGTAACAGTCCGGTTTGGGTTAGCGGAGCGGAGCGACTGGC
GAATTCAGGTTGTGACCGGGCAAGACAGGGGCAGGTTTTCGGGTTACAGA
CTTTGGTTTGTATACCGTCGGCAAATGGGGTTGTTGAATTGAGGTCCACT
GAGGTGATTATTCAAAACTCGGATCTGATGAATAANGTTCGATTTTTGTT
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