FC878364
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC878364 vs. ExPASy Swiss-Prot
Match: RAP1_ARATH (Transcription factor MYC2 OS=Arabidopsis thaliana GN=RAP1 PE=1 SV=2) HSP 1 Score: 241.121 bits (614), Expect = 5.830e-63 Identity = 136/260 (52.31%), Postives = 168/260 (64.62%), Query Frame = 3 Query: 87 MTDYRLPSTMNLWT-DDNGSVMEAFMSS-DLTGIWPPSQSSASTADPMKTHIXXXXXXXXXXXXFFNQETLQQRLQQLIEGSREGWTYAIFWQSSCDYSGSSMLGWGDXXXXXXXXXXXXXXIKTS----SAAEQEHRKKVLRELNSLISGSTSSPXXXXXXXXXXXXXWFFLISMTQSFYVTXXXXXXXLPGQAYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPSANGVVELRSTEVIIQNSDLMNXVRFL 848 MTDYRL TMNLWT DDN S+MEAFMSS D++ +WPP+ ++ +TA T FNQETLQQRLQ LIEG+ EGWTYAIFWQ S D+SG+S+LGWGD +S + A+QE+RKKVLRELNSLISG + P WFFL+SMTQSF L G+A+ + VWVSG+++L+ SGC+RA+QG VFG+ T+ CIPSANGVVE+ STE I Q+SDL+N VR L Sbjct: 1 MTDYRLQPTMNLWTTDDNASMMEAFMSSSDISTLWPPASTTTTTAT---TETTPTPAMEIPAQAGFNQETLQQRLQALIEGTHEGWTYAIFWQPSYDFSGASVLGWGDGYYKGEEDKANPRRRSSSPPFSTPADQEYRKKVLRELNSLISGGVA-PSDDAVDEEVTDTEWFFLVSMTQSF-----ACGAGLAGKAFATGNAVWVSGSDQLSGSGCERAKQGGVFGMHTIACIPSANGVVEVGSTEPIRQSSDLINKVRIL 251
BLAST of FC878364 vs. ExPASy Swiss-Prot
Match: BH004_ARATH (Transcription factor MYC4 OS=Arabidopsis thaliana GN=BHLH4 PE=2 SV=1) HSP 1 Score: 193.356 bits (490), Expect = 1.394e-48 Identity = 116/265 (43.77%), Postives = 150/265 (56.60%), Query Frame = 3 Query: 87 MTDYRL----PSTMNLW-TDDNGSVMEAFMS--SDLTGIWPPSQSSASTADPMKTHIXXXXXXXXXXXXFFNQETLQQRLQQLIEGSREGWTYAIFWQSSCDYSGSS-------MLGWGDXXXXXXXXXXXXXXIKTSSAAEQEHRKKVLRELNSLISGSTSSPXXXXXXXXXXXXXWFFLISMTQSFYVTXXXXXXXLPGQAYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPSANGVVELRSTEVIIQNSDLMNXV 839 +TDY L T NLW TDD+ SVMEAF+ SD + ++PP P + N++ LQQRLQ LIEG+ E WTYA+FWQSS ++G +LGWGD +SAAEQEHRK+V+RELNSLISG WFFL+SMTQSF LPGQA+ + +W+SG+ LA S C+RARQGQ++GLQT+VC+ + NGVVEL S+E+I Q+SDL++ V Sbjct: 8 VTDYHLNQSKTDTTNLWSTDDDASVMEAFIGGGSDHSSLFPP------LPPPPLPQV--------------NEDNLQQRLQALIEGANENWTYAVFWQSSHGFAGEDNNNNNTVLLGWGDGYYKGEEEKSRKKKSNPASAAEQEHRKRVIRELNSLISGGVGG-GDEAGDEEVTDTEWFFLVSMTQSFV-----KGTGLPGQAFSNSDTIWLSGSNALAGSSCERARQGQIYGLQTMVCVATENGVVELGSSEIIHQSSDLVDKV 246
BLAST of FC878364 vs. ExPASy Swiss-Prot
Match: ATR2_ARATH (Transcription factor ATR2 OS=Arabidopsis thaliana GN=ATR2 PE=1 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 2.816e-41 Identity = 94/196 (47.96%), Postives = 121/196 (61.73%), Query Frame = 3 Query: 276 FNQETLQQRLQQLIEGSREGWTYAIFWQSSCDYSGSS-----MLGWGDXXXXXXXXXXXXXXIKTSSAAEQEHRKKVLRELNSLISGSTSSPXXXXXXXXXXXXXWFFLISMTQSFYVTXXXXXXXLPGQAYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPSANGVVELRSTEVIIQNSDLMNXVRFL 848 FN++TLQQRLQ LIE + E WTYAIFWQ S D+ S+ +LGWGD ++ AEQEHRK+V+RELNSLISG WFFL+SMTQSF LPG+++ + +W+SG+ L SGC+RA QGQ++GL+T+VCI + NGVVEL S+EVI Q+SDLM+ V L Sbjct: 47 FNEDTLQQRLQALIESAGENWTYAIFWQISHDFDSSTGDNTVILGWGDGYYKGEEDKEKKK--NNTNTAEQEHRKRVIRELNSLISGGIGVSDESNDEEVTDTE-WFFLVSMTQSFV-----NGVGLPGESFLNSRVIWLSGSGALTGSGCERAGQGQIYGLKTMVCIATQNGVVELGSSEVISQSSDLMHKVNNL 234
BLAST of FC878364 vs. ExPASy Swiss-Prot
Match: BH028_ARATH (Transcription factor bHLH28 OS=Arabidopsis thaliana GN=BHLH28 PE=2 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 6.287e-33 Identity = 93/251 (37.05%), Postives = 126/251 (50.20%), Query Frame = 3 Query: 126 TDDNGSVMEAFMSSDLTGIWPPSQSSASTADPMKTHIXXXXXXXXXXXXFFNQETLQQRLQQLIEGSREGWTYAIFWQSSCD-YSGSSMLGWGDXXXXXXXXXXXXXXIKT-----SSAAEQEHRKKVLRELNSLISGST----SSPXXXXXXXXXXXXXWFFLISMTQSFYVTXXXXXXXLPGQAYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPSANGVVELRSTEVIIQNSDLMNXVRFL 848 TDDN ++EA ++SD + P+ S T TL +RL ++ G+ E W+YAIFW+ S D +SG ++L WGD ++ SS E+E R V+RELN +ISG WFFL+SMT SF L G+A+ +PV V+G++ + SGCDRA+QG GLQT++CIPS NGV+EL STE I NSDL N +RFL Sbjct: 4 TDDNLLMIEALLTSDPSPPLLPANLSLET-------------------------TLPKRLHAVLNGTHEPWSYAIFWKPSYDDFSGEAVLKWGDGVYTGGNEEKTRGRLRRKKTILSSPEEKERRSNVIRELNLMISGEAFPVVEDDVSDDDDVEVTDMEWFFLVSMTWSF-----GNGSGLAGKAFASYNPVLVTGSDLIYGSGCDRAKQGGDVGLQTILCIPSHNGVLELASTEEIRPNSDLFNRIRFL 224
BLAST of FC878364 vs. ExPASy Swiss-Prot
Match: BH013_ARATH (Transcription factor bHLH13 OS=Arabidopsis thaliana GN=BHLH13 PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 2.246e-14 Identity = 59/198 (29.80%), Postives = 86/198 (43.43%), Query Frame = 3 Query: 279 NQETLQQRLQQLIE---GSREGWTYAIFWQSSCDYSGSSMLGWGDXXXXXXXXXXXXXXIKTSSAAEQEH-----RKKVLRELNSLISGSTSSPXXXXXXXXXXXXXWFFLISMTQSFYVTXXXXXXXLPGQAYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPSANGVVELRSTEVIIQNSDLMNXVRFL 848 + E LQ +L L+E S W YAIFWQ S +G +L WGD ++ S +E RK+VL++L+ L GS F L SM SF PG+ + PVW+S + C R+ + G+QT+V +P+ GVVEL ST + ++ D + +R L Sbjct: 44 SDENLQNKLSDLVERPNASNFSWNYAIFWQISRSKAGDLVLCWGDGYCREPKEGEKSEIVRILSMGREEETHQTMRKRVLQKLHDLFGGSEEE-NCALGLDRVTDTEMFLLSSMYFSF-----PRGEGGPGKCFASAKPVWLSDVVNSGSDYCVRSFLAKSAGIQTVVLVPTDLGVVELGSTSCLPESEDSILSIRSL 235
BLAST of FC878364 vs. ExPASy Swiss-Prot
Match: AIB_ARATH (Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Arabidopsis thaliana GN=AIB PE=2 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 5.533e-13 Identity = 57/199 (28.64%), Postives = 88/199 (44.22%), Query Frame = 3 Query: 285 ETLQQRLQQLIEGSRE---GWTYAIFWQSSCDYSGSSMLGWGDXXXXXXXXXXXXXXIKT----SSAAEQEH----RKKVLRELNSLISGSTSSPXXXXXXXXXXXXXWFFLISMTQSFYVTXXXXXXXLPGQAYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPSANGVVELRSTEVIIQNSDLMNXVRFL 848 +TL ++L L++ W YAIFWQ + SG +LGWGD +++ + AE+E RK+VL++L+ L GS FFL SM F PG+ Y VW+S A + C R+ + G++T+V +P+ GV+EL S + +N L+ V+ L Sbjct: 46 DTLNKKLSSLVDWPNSENFSWNYAIFWQQTMSRSGQQVLGWGDGCCREPNEEEESKVVRSYNFNNMGAEEETWQDMRKRVLQKLHRLFGGSDEDNYALSLEKVTATEI-FFLASMYFFF-----NHGEGGPGRCYSSGKHVWLSDAVNSESDYCFRSFMAKSAGIRTIVMVPTDAGVLELGSVWSLPENIGLVKSVQAL 238 The following BLAST results are available for this feature:
BLAST of FC878364 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878364 ID=FC878364; Name=FC878364; organism=Citrus clementina; type=EST; length=850bpback to top |